prot_P-canaliculata_contig96798.23718.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig96798.23718.1
Unique Nameprot_P-canaliculata_contig96798.23718.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length165
Homology
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BLAST of mRNA_P-canaliculata_contig96798.23718.1 vs. uniprot
Match: UPI001CCBE634 (hypothetical protein n=1 Tax=Bremerella volcania TaxID=2527984 RepID=UPI001CCBE634)

HSP 1 Score: 69.7 bits (169), Expect = 8.120e-11
Identity = 39/145 (26.90%), Postives = 71/145 (48.97%), Query Frame = 0 
Query:   17 LPICFVGSKTHIGVGRNLISVNVSGDI-EKVEFYHAVRSICGSVPGTMPRIALAFDNGVQVIWNKGEASSRPIICEEMLEPKTLFTRTGHLVIAADRVCEIYKTVNRQVQFVAVIEIVS-CVRLMRSRESNQFAVLTDSGDICVY 159
            +P+       +IG+G  L+ +N  GD   +VEF   +  + GS P T  R+ ++ + G  + W+            EM  P   FTR+GH+V A+ + C+I  T N +++ +  I++ S    L+      +F ++ + G I +Y
Sbjct:  787 IPMWASSKHIYIGLGT-LLRINEQGDSWREVEFDSNIIRLTGSFPNTRSRLLISLEQGAMISWDDNFDGREVAFAREMERPFLAFTRSGHVVAASGKKCQILATRNDKIELIGEIDLPSEAYGLVTGNAPEEFGIVQEYGSIAIY 930
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig96798.23718.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001CCBE6348.120e-1126.90hypothetical protein n=1 Tax=Bremerella volcania T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig96798contigP-canaliculata_contig96798:460..954 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig96798.23718.1mRNA_P-canaliculata_contig96798.23718.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig96798 460..954 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig96798.23718.1 ID=prot_P-canaliculata_contig96798.23718.1|Name=mRNA_P-canaliculata_contig96798.23718.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=165bp
MSSKLLELEFRELSIPLPICFVGSKTHIGVGRNLISVNVSGDIEKVEFYH
AVRSICGSVPGTMPRIALAFDNGVQVIWNKGEASSRPIICEEMLEPKTLF
TRTGHLVIAADRVCEIYKTVNRQVQFVAVIEIVSCVRLMRSRESNQFAVL
TDSGDICVYHIPMR*
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