prot_P-canaliculata_contig96790.23717.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig96790.23717.1
Unique Nameprot_P-canaliculata_contig96790.23717.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length134
Homology
BLAST of mRNA_P-canaliculata_contig96790.23717.1 vs. uniprot
Match: UPI00097767F3 (hypothetical protein n=1 Tax=Pseudoalteromonas sp. SK18 TaxID=1938366 RepID=UPI00097767F3)

HSP 1 Score: 61.2 bits (147), Expect = 1.730e-9
Identity = 33/96 (34.38%), Postives = 57/96 (59.38%), Query Frame = 0
Query:    7 VVVVFFFLTIMGAFDLDRREYSSKTEASSDLIFEKGWLLENIPDSSKNILVIYNRDIGTSEGSFSFVPSETENFMSDLI-AVGEQGLSFNKGHEEF 101
            VV++   L I G  D    +Y++ T+A  D +FE+GWL + +P+S+K+I V+ + D  +S+GSF    SE   F+ ++  A      +F+KGH ++
Sbjct:    4 VVLILSTLLIFGCSDEVTTQYATYTDAQKDSLFERGWLPDILPESTKHIKVVNDLDTNSSQGSFIIEGSEVGLFLENIKPADNVNQFNFSKGHSKW 99          
BLAST of mRNA_P-canaliculata_contig96790.23717.1 vs. uniprot
Match: UPI001A1C0B69 (Uncharacterized protein n=18 Tax=Vibrio TaxID=662 RepID=UPI001A1C0B69)

HSP 1 Score: 52.8 bits (125), Expect = 3.860e-6
Identity = 25/71 (35.21%), Postives = 40/71 (56.34%), Query Frame = 0
Query:   14 LTIMGAFDLDRREYSSKTEASSDLIFEKGWLLENIPDSSKNILVIYNRDIGTSEGSFSFVPSETENFMSDL 84
            L + G  D+ +  Y +  +A +D +FE+GWL + +P S++ I V  + D  TS+GSF     E   F+S L
Sbjct:   14 LVLAGCSDIVQSHYDNYQQAQADQLFERGWLPDVLPVSTRQIEVANDLDNNTSQGSFVIAEKEMAQFLSQL 84          
BLAST of mRNA_P-canaliculata_contig96790.23717.1 vs. uniprot
Match: A0A0L1LA17_9VIBR (Uncharacterized protein n=9 Tax=Vibrionaceae TaxID=641 RepID=A0A0L1LA17_9VIBR)

HSP 1 Score: 52.0 bits (123), Expect = 8.320e-6
Identity = 35/105 (33.33%), Postives = 57/105 (54.29%), Query Frame = 0
Query:    1 MSISFVVVVVFFFLTIMGAFDLDRREYSSKTEASSDLIFEKGWLLENIPDSSKNILVIYNRDIGTSEGSFSFVPSETENFMSDLIAVGEQGLSFNKGHEEFQGVR 105
            +SISF V+ +     + G  D+ R EY++  +A  + +F++GWL + +P S+K I V  N D  TS+G F     E    +S+ IA  E     N+ + EFQ ++
Sbjct:    7 LSISFSVLAL-----MSGCSDVVRSEYATYAQAKKERLFDRGWLPDILPASTKKIEVNNNLDSNTSDGRFIINDPE----LSEFIATLEP----NESNSEFQFIK 98          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig96790.23717.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
UPI00097767F31.730e-934.38hypothetical protein n=1 Tax=Pseudoalteromonas sp.... [more]
UPI001A1C0B693.860e-635.21Uncharacterized protein n=18 Tax=Vibrio TaxID=662 ... [more]
A0A0L1LA17_9VIBR8.320e-633.33Uncharacterized protein n=9 Tax=Vibrionaceae TaxID... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..14
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..18
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 19..134
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..19
score: 0.838
NoneNo IPR availableTMHMMTMhelixcoord: 2..20

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig96790contigP-canaliculata_contig96790:15..416 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig96790.23717.1mRNA_P-canaliculata_contig96790.23717.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig96790 15..428 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig96790.23717.1 ID=prot_P-canaliculata_contig96790.23717.1|Name=mRNA_P-canaliculata_contig96790.23717.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=134bp
MSISFVVVVVFFFLTIMGAFDLDRREYSSKTEASSDLIFEKGWLLENIPD
SSKNILVIYNRDIGTSEGSFSFVPSETENFMSDLIAVGEQGLSFNKGHEE
FQGVRYLAITIWPQSGTFWKFMIDPKLGHCVFLY
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