prot_P-canaliculata_contig96767.23712.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-canaliculata_contig96767.23712.1
Unique Name	prot_P-canaliculata_contig96767.23712.1
Type	polypeptide
Organism	Pelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length	124

Homology

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BLAST of mRNA_P-canaliculata_contig96767.23712.1 vs. uniprot
Match: D7FWI9_ECTSI (Histone H2A n=6 Tax=Ectocarpus TaxID=2879 RepID=D7FWI9_ECTSI)

HSP 1 Score: 205 bits (521), Expect = 2.680e-66
Identity = 107/123 (86.99%), Postives = 113/123 (91.87%), Query Frame = 0

Query:    1 MTGKGKGGRGDKKTTSRSSKAGLQFPVGRVGHFLKADKYSQRVGAGTPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHVQLAVRNDEELKKLLGEVTIASGGVLPNIHAVLLPKKVASK 123
            M+GKGKGGRG KK+T+RS+KAGLQFPVGRVG FLK  KY+ RVGAG PVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRH+QLAVRNDEEL KLLGEVTIASGGVLPNIHAVLLPKK   K
Sbjct:    1 MSGKGKGGRG-KKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVKK 122

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BLAST of mRNA_P-canaliculata_contig96767.23712.1 vs. uniprot
Match: D7G193_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G193_ECTSI)

HSP 1 Score: 203 bits (516), Expect = 9.010e-65
Identity = 106/119 (89.08%), Postives = 112/119 (94.12%), Query Frame = 0

Query:    1 MTGKGKGGRGDKKTTSRSSKAGLQFPVGRVGHFLKADKYSQRVGAGTPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHVQLAVRNDEELKKLLGEVTIASGGVLPNIHAVLLPKK 119
            M+GKGKGGRG KK+T+RS+KAGLQFPVGRVG FLK  KY+ RVGAG PVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRH+QLAVRNDEEL KLLGEVTIASGGVLPNIHAVLLPKK
Sbjct:   46 MSGKGKGGRG-KKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 163

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BLAST of mRNA_P-canaliculata_contig96767.23712.1 vs. uniprot
Match: A0A6H5KG79_9PHAE (Histone H2A n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG79_9PHAE)

HSP 1 Score: 200 bits (508), Expect = 3.920e-64
Identity = 104/119 (87.39%), Postives = 111/119 (93.28%), Query Frame = 0

Query:    1 MTGKGKGGRGDKKTTSRSSKAGLQFPVGRVGHFLKADKYSQRVGAGTPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHVQLAVRNDEELKKLLGEVTIASGGVLPNIHAVLLPKK 119
            M+GKGKGGRG KK+TS+SSKAGLQFPV R+G +LK  KY+ RVGAG PVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRH+QLAVRNDEEL KLLGEVTIASGGVLPNIHAVLLPKK
Sbjct:    1 MSGKGKGGRG-KKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 118

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BLAST of mRNA_P-canaliculata_contig96767.23712.1 vs. uniprot
Match: A0A835ZLE9_9STRA (Histone H2A n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLE9_9STRA)

HSP 1 Score: 198 bits (504), Expect = 1.880e-63
Identity = 99/121 (81.82%), Postives = 111/121 (91.74%), Query Frame = 0

Query:    3 GKGKGGRGDKKTTSRSSKAGLQFPVGRVGHFLKADKYSQRVGAGTPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHVQLAVRNDEELKKLLGEVTIASGGVLPNIHAVLLPKKVASK 123
            GKGKGGRGDKK  S+S+KAGLQFPVGRVG FLK  +Y++RVGAG PVY+AAV+EYL AEVLEL+GNAARDNKK+RIIPRH+QLAVRNDEEL KLLG+VTIA+GGVLPNIHAVLLPKK  SK
Sbjct:    5 GKGKGGRGDKKAVSKSAKAGLQFPVGRVGRFLKQGRYAKRVGAGAPVYMAAVMEYLCAEVLELSGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGKVTIAAGGVLPNIHAVLLPKKTRSK 125

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BLAST of mRNA_P-canaliculata_contig96767.23712.1 vs. uniprot
Match: D7FVQ5_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVQ5_ECTSI)

HSP 1 Score: 200 bits (508), Expect = 1.990e-63
Identity = 104/119 (87.39%), Postives = 111/119 (93.28%), Query Frame = 0

Query:    1 MTGKGKGGRGDKKTTSRSSKAGLQFPVGRVGHFLKADKYSQRVGAGTPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHVQLAVRNDEELKKLLGEVTIASGGVLPNIHAVLLPKK 119
            M+GKGKGGRG KK+TS+SSKAGLQFPV R+G +LK  KY+ RVGAG PVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRH+QLAVRNDEEL KLLGEVTIASGGVLPNIHAVLLPKK
Sbjct:   52 MSGKGKGGRG-KKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 169

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BLAST of mRNA_P-canaliculata_contig96767.23712.1 vs. uniprot
Match: D8LLP0_ECTSI (Histone H2A n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLP0_ECTSI)

HSP 1 Score: 197 bits (500), Expect = 3.870e-63
Identity = 100/119 (84.03%), Postives = 109/119 (91.60%), Query Frame = 0

Query:    1 MTGKGKGGRGDKKTTSRSSKAGLQFPVGRVGHFLKADKYSQRVGAGTPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHVQLAVRNDEELKKLLGEVTIASGGVLPNIHAVLLPKK 119
            M+GKGKGGRG KK TSRS+KAGLQFPVGR+G F+K  KYS RVG G PVY+AAVLEYLTAEVLELAGNAARDNKKARI+PRH+QLAVRNDEEL +LLG+ TIASGGVLPNIHAVLLPKK
Sbjct:    1 MSGKGKGGRG-KKITSRSAKAGLQFPVGRIGRFIKQGKYSSRVGGGAPVYMAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNRLLGDATIASGGVLPNIHAVLLPKK 118

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BLAST of mRNA_P-canaliculata_contig96767.23712.1 vs. uniprot
Match: A0A836CG77_9STRA (Histone H2A n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG77_9STRA)

HSP 1 Score: 196 bits (498), Expect = 1.080e-62
Identity = 101/124 (81.45%), Postives = 111/124 (89.52%), Query Frame = 0

Query:    1 MTGKGKGGRGD--KKTTSRSSKAGLQFPVGRVGHFLKADKYSQRVGAGTPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHVQLAVRNDEELKKLLGEVTIASGGVLPNIHAVLLPKKVAS 122
            M GKGKGGRG   KK+TS+SSKAGLQFPV R+G FLK  +Y++RVGAG PVYLAAVLEYL AE+LELAGNAARDNKK+RI+PRH+QLAVRNDEEL KLLG VTIASGGVLPNIHAVLLPKK AS
Sbjct:    1 MAGKGKGGRGAEAKKSTSKSSKAGLQFPVARLGRFLKVGRYAERVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHIQLAVRNDEELNKLLGNVTIASGGVLPNIHAVLLPKKTAS 124

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BLAST of mRNA_P-canaliculata_contig96767.23712.1 vs. uniprot
Match: A0A835ZBB6_9STRA (Histone H2A n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBB6_9STRA)

HSP 1 Score: 191 bits (486), Expect = 8.010e-61
Identity = 98/125 (78.40%), Postives = 110/125 (88.00%), Query Frame = 0

Query:    1 MTGKGKGGRG--DKKTTSRSSKAGLQFPVGRVGHFLKADKYSQRVGAGTPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHVQLAVRNDEELKKLLGEVTIASGGVLPNIHAVLLPKKVASK 123
            M GKGKGGRG   KK TS+S+KAGLQFPV R+G +LK  +Y+ RVGAG PVYLAAVLEYL AE+LELAGNAARDNKK+RI+PRH+QLAVRNDEEL +LLG VTIASGGVLPNIHAVLLPKK A+K
Sbjct:    1 MAGKGKGGRGAEGKKITSQSAKAGLQFPVARMGRYLKQGRYADRVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHIQLAVRNDEELNRLLGNVTIASGGVLPNIHAVLLPKKTAAK 125

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BLAST of mRNA_P-canaliculata_contig96767.23712.1 vs. uniprot
Match: A0A448ZH28_9STRA (Histone H2A n=12 Tax=Bacillariophyta TaxID=2836 RepID=A0A448ZH28_9STRA)

HSP 1 Score: 191 bits (485), Expect = 8.240e-61
Identity = 93/119 (78.15%), Postives = 109/119 (91.60%), Query Frame = 0

Query:    1 MTGKGKGGRGDKKTTSRSSKAGLQFPVGRVGHFLKADKYSQRVGAGTPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHVQLAVRNDEELKKLLGEVTIASGGVLPNIHAVLLPKK 119
            M+GKGKGGRG+KK+T+ S+KAGLQFPVGR+G +L+  KY+ R+GAG PVYLAAVLEYL AE+LELAGNAARDNKK+RI+PRH+ LAV+NDEEL KLLG VTIASGGVLPNIHA+LLPKK
Sbjct:    1 MSGKGKGGRGEKKSTTASAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAILLPKK 119

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BLAST of mRNA_P-canaliculata_contig96767.23712.1 vs. uniprot
Match: A0A6U2JFS4_9STRA (Histone H2A n=6 Tax=Bacillariophyta TaxID=2836 RepID=A0A6U2JFS4_9STRA)

HSP 1 Score: 191 bits (485), Expect = 8.240e-61
Identity = 95/121 (78.51%), Postives = 109/121 (90.08%), Query Frame = 0

Query:    1 MTGKGKGGRGDKKTTSRSSKAGLQFPVGRVGHFLKADKYSQRVGAGTPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHVQLAVRNDEELKKLLGEVTIASGGVLPNIHAVLLPKKVA 121
            M+GKGKGGRG KK+T+ S+KAGLQFPVGR+G +L+  KY+ R+GAG PVYLAAVLEYL AE+LELAGNAARDNKK+RI+PRH+ LAV+NDEEL KLLG VTIASGGVLPNIHAVLLPKK A
Sbjct:    1 MSGKGKGGRGGKKSTTSSAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAVLLPKKSA 121

The following BLAST results are available for this feature:

BLAST of mRNA_P-canaliculata_contig96767.23712.1 vs. uniprot

BLAST of mRNA_P-canaliculata_contig96767.23712.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FWI9_ECTSI	2.680e-66	86.99	Histone H2A n=6 Tax=Ectocarpus TaxID=2879 RepID=D7...	[more]
D7G193_ECTSI	9.010e-65	89.08	Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2...	[more]
A0A6H5KG79_9PHAE	3.920e-64	87.39	Histone H2A n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta...	[more]
A0A835ZLE9_9STRA	1.880e-63	81.82	Histone H2A n=2 Tax=Tribonema minus TaxID=303371 R...	[more]
D7FVQ5_ECTSI	1.990e-63	87.39	Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2...	[more]
D8LLP0_ECTSI	3.870e-63	84.03	Histone H2A n=2 Tax=Ectocarpus TaxID=2879 RepID=D8...	[more]
A0A836CG77_9STRA	1.080e-62	81.45	Histone H2A n=2 Tax=Tribonema minus TaxID=303371 R...	[more]
A0A835ZBB6_9STRA	8.010e-61	78.40	Histone H2A n=1 Tax=Tribonema minus TaxID=303371 R...	[more]
A0A448ZH28_9STRA	8.240e-61	78.15	Histone H2A n=12 Tax=Bacillariophyta TaxID=2836 Re...	[more]
A0A6U2JFS4_9STRA	8.240e-61	78.51	Histone H2A n=6 Tax=Bacillariophyta TaxID=2836 Rep...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002119	Histone H2A	PRINTS	PR00620	HISTONEH2A	coord: 42..57 score: 84.58 coord: 57..70 score: 90.54 coord: 99..117 score: 76.04 coord: 13..35 score: 66.38 coord: 71..85 score: 76.51
IPR002119	Histone H2A	SMART	SM00414	h2a4	coord: 3..122 e-value: 4.1E-74 score: 262.2
IPR009072	Histone-fold	GENE3D	1.10.20.10		coord: 2..123 e-value: 3.4E-59 score: 200.2
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 3..121
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 9..88 e-value: 6.5E-14 score: 52.4
IPR032454	Histone H2A, C-terminal domain	PFAM	PF16211	Histone_H2A_C	coord: 91..122 e-value: 1.8E-17 score: 62.8
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 2..121
None	No IPR available	PANTHER	PTHR23430:SF233	HISTONE H2A.6-RELATED	coord: 2..121
IPR032458	Histone H2A conserved site	PROSITE	PS00046	HISTONE_H2A	coord: 21..27

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-canaliculata_contig96767	contig	P-canaliculata_contig96767:372..743 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Pelvetia canaliculata dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-canaliculata_contig96767.23712.1	mRNA_P-canaliculata_contig96767.23712.1	Pelvetia canaliculata dioecious	mRNA	P-canaliculata_contig96767 372..743 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-canaliculata_contig96767.23712.1 ID=prot_P-canaliculata_contig96767.23712.1|Name=mRNA_P-canaliculata_contig96767.23712.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=124bp
MTGKGKGGRGDKKTTSRSSKAGLQFPVGRVGHFLKADKYSQRVGAGTPVY
LAAVLEYLTAEVLELAGNAARDNKKARIIPRHVQLAVRNDEELKKLLGEV
TIASGGVLPNIHAVLLPKKVASK*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002119	Histone_H2A
IPR009072	Histone-fold
IPR007125	Histone_H2A/H2B/H3
IPR032454	Histone_H2A_C
IPR032458	Histone_H2A_CS