prot_P-canaliculata_contig96745.23709.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig96745.23709.1
Unique Nameprot_P-canaliculata_contig96745.23709.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length87
Homology
BLAST of mRNA_P-canaliculata_contig96745.23709.1 vs. uniprot
Match: UPI001AD8DC38 (uncharacterized protein LOC121052952 isoform X1 n=1 Tax=Rosa chinensis TaxID=74649 RepID=UPI001AD8DC38)

HSP 1 Score: 58.9 bits (141), Expect = 3.360e-8
Identity = 31/85 (36.47%), Postives = 51/85 (60.00%), Query Frame = 0
Query:    1 MGDDLWLLETGATGHFTYDSRLLENYAER--SRVLRCAGGNTFPIVGTGTFRLSLRSGKGVVRVTLMNVAHVPGLSHHLLSLRRI 83
            +G+D W++++GA+ H TYD     + +    S+V   A G  FP++GTG+ RL+         + L NV +VP LSHHL+S+ ++
Sbjct:  348 VGEDTWIIDSGASDHMTYDKSYFTHLSPPPVSKVTN-ANGEAFPVLGTGSVRLT-------PTLELHNVLYVPALSHHLISVPQL 424          
BLAST of mRNA_P-canaliculata_contig96745.23709.1 vs. uniprot
Match: A0A2P6RQJ8_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6RQJ8_ROSCH)

HSP 1 Score: 54.7 bits (130), Expect = 9.720e-7
Identity = 31/84 (36.90%), Postives = 51/84 (60.71%), Query Frame = 0
Query:    2 GDDLWLLETGATGHFTYDSR--LLENYAERSRVLRCAGGNTFPIVGTGTFRLSLRSGKGVVRVTLMNVAHVPGLSHHLLSLRRI 83
            G + W++++GA+ H TYD    L  N    S V+  A G++FP++G G+ RL+         +TL +V +VP LSHHL+S+ ++
Sbjct:  103 GGNTWIIDSGASDHMTYDRSFFLFLNPPSISSVVN-ANGDSFPVLGIGSIRLT-------PSLTLHDVLYVPDLSHHLISVPQL 178          
BLAST of mRNA_P-canaliculata_contig96745.23709.1 vs. uniprot
Match: A0A2P6RMC5_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6RMC5_ROSCH)

HSP 1 Score: 54.3 bits (129), Expect = 1.510e-6
Identity = 31/84 (36.90%), Postives = 51/84 (60.71%), Query Frame = 0
Query:    2 GDDLWLLETGATGHFTYDSR--LLENYAERSRVLRCAGGNTFPIVGTGTFRLSLRSGKGVVRVTLMNVAHVPGLSHHLLSLRRI 83
            G + W++++GA+ H TYD    L  N    S V+  A G++FP++G G+ RL+         +TL +V +VP LSHHL+S+ ++
Sbjct:  100 GGNTWIIDSGASDHMTYDRSFFLFLNPPSISSVVN-ANGDSFPVLGIGSVRLT-------PSLTLHDVLYVPDLSHHLISVPQL 175          
BLAST of mRNA_P-canaliculata_contig96745.23709.1 vs. uniprot
Match: A0A7J0FQP2_9ERIC (CCHC-type domain-containing protein n=1 Tax=Actinidia rufa TaxID=165716 RepID=A0A7J0FQP2_9ERIC)

HSP 1 Score: 50.4 bits (119), Expect = 3.250e-5
Identity = 29/87 (33.33%), Postives = 50/87 (57.47%), Query Frame = 0
Query:    3 DDLWLLETGATGHFTYDSRLLENYAERSRVLRCAGGNTFP--IVGTGTFRLSLRSGKGVVRVTLMNVAHVPGLSHHLLSLRRIADAG 87
            DD+W++++GA  H TY   +L NY  +    +   G+  P  I+G G  ++SL +G     + L +V HVP L  +L+S+ ++A +G
Sbjct:  256 DDVWIVDSGALFHATYQKEILHNYV-KGDFGKVYLGDDEPCSIIGKGEVQISLTNG---TTLRLKDVRHVPNLKRNLISVGQLATSG 338          
BLAST of mRNA_P-canaliculata_contig96745.23709.1 vs. uniprot
Match: A0A2Z6N5N8_TRISU (Integrase catalytic domain-containing protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6N5N8_TRISU)

HSP 1 Score: 50.4 bits (119), Expect = 3.460e-5
Identity = 28/85 (32.94%), Postives = 48/85 (56.47%), Query Frame = 0
Query:    3 DDLWLLETGATGHFTYDSRLLENYAERS-RVLRCAGGNTFPIVGTGTFRLSLRSGKGVVRVTLMNVAHVPGLSHHLLSLRRIADA 86
            D LW++++GAT H T+DS+ + +    S + +  A G+   IVG G+  L+         + L +V  VP L H+LLS+ +I ++
Sbjct:  333 DSLWIIDSGATDHMTFDSKQISHLRPSSQKSISTANGSEASIVGEGSLSLTKN-------LNLDSVLVVPSLDHNLLSISQITES 410          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig96745.23709.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
UPI001AD8DC383.360e-836.47uncharacterized protein LOC121052952 isoform X1 n=... [more]
A0A2P6RQJ8_ROSCH9.720e-736.90Putative RNA-directed DNA polymerase n=1 Tax=Rosa ... [more]
A0A2P6RMC5_ROSCH1.510e-636.90Putative RNA-directed DNA polymerase n=1 Tax=Rosa ... [more]
A0A7J0FQP2_9ERIC3.250e-533.33CCHC-type domain-containing protein n=1 Tax=Actini... [more]
A0A2Z6N5N8_TRISU3.460e-532.94Integrase catalytic domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig96745contigP-canaliculata_contig96745:134..394 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig96745.23709.1mRNA_P-canaliculata_contig96745.23709.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig96745 134..394 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig96745.23709.1 ID=prot_P-canaliculata_contig96745.23709.1|Name=mRNA_P-canaliculata_contig96745.23709.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=87bp
MGDDLWLLETGATGHFTYDSRLLENYAERSRVLRCAGGNTFPIVGTGTFR
LSLRSGKGVVRVTLMNVAHVPGLSHHLLSLRRIADAG
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