prot_P-canaliculata_contig9625.23665.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig9625.23665.1
Unique Nameprot_P-canaliculata_contig9625.23665.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length596
Homology
BLAST of mRNA_P-canaliculata_contig9625.23665.1 vs. uniprot
Match: D8LNV8_ECTSI (TFIIS N-terminal domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNV8_ECTSI)

HSP 1 Score: 410 bits (1055), Expect = 3.320e-132
Identity = 323/649 (49.77%), Postives = 367/649 (56.55%), Query Frame = 0
Query:    2 ATDFFKNRFKRHNPSKN---IASGSESAARG-----GGFTAIAEALTPAEASLLKALNTDVAGGNG------VAGLSGLDRLMRVMINAPDREARALCLELLIRSKDDADVMKGFVERRGLTFIKGWLAEETTSVAMIKLLLSVAKVLPVTYSSLKQSDAGRALKALYKHADPGVKKQAKAVIAHWKNELVRDEGEIAKHREKLDALHDDIKAVRAASGLGTTTGGSAAGTGSARSFPGR--KFPTRGSTRGRGAAAXXXXXXXXSRGSVLRGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGGILKVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEGSSDVAIPAGGGGAVLSAPGPPPIVSLDEMARADAAEKKRKRKARPAGKKVGWADRAGKILQ---------------------IVKEFHPEDAALVVSEEPQEETPGXXXXXXXXXXXXXXXXKHWAERVKREREMERKFHGKSGGRARGTGGEDEGAGPGARGVELAAA-----------------SRRRTMMPAVSWRRPGLYQEGVVHEFVMTLEVESSEAEGQAARTRAGLEVVYLSSGDIPPSPAEPDAASFLPADGTHSSPYEIPFYMETELEQMQADQEQEKEQQ 596
            ++DFF+ R+KR N  K    +A G   A  G     GG     E LTPAE SLLK L   VAGG G      VAG +GLDRLMRVMINAPDREARALCLELL+RSK D +VMK FVERRGL FIKGWLAEET S+ M+KLLL+VAKVLPVTYSSL QSDAG+ALKAL KHAD G++KQAKAVI+HW+  LV D+GEIAKHR++LD LHD +KA + A          AA     R    R    PT  +  G+   A                 XXXXXXXXXXXXXXXXXXXXXXXXXXX  G                                                                        GPPPIVSLDEMARA++ EKKR RKA+PAGKKVGWADRAG+ LQ                     +VKEFH EDAA  VSE PQE                    +HWAERVKREREMERKFHGKSGGR++                                       +R+ M+  V WRRPG Y++GVVHE V+ LEVESSEAE Q ARTRAGLE VYLSSGDIP +PAEPDAASFLP D      Y+IPFYME+ELEQMQA+  +E++QQ
Sbjct:   32 SSDFFRARYKRQNVGKGGGALAPGWAVALEGPQGGSGGGAGAREVLTPAENSLLKTLGDAVAGGGGAXXRGGVAGAAGLDRLMRVMINAPDREARALCLELLLRSKGDEEVMKAFVERRGLMFIKGWLAEETKSINMMKLLLTVAKVLPVTYSSLMQSDAGKALKALNKHADSGIRKQAKAVISHWRTALVSDKGEIAKHRKQLDDLHDKLKAKQDAEKKAKAE---AADADKRRRDLARVTAVPTAATAGGQDGTADGGAAATDGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGIGS-----------------------------------------------------------------------GPPPIVSLDEMARAESEEKKRLRKAKPAGKKVGWADRAGRTLQESVEGRRLMLMNHPGTRRALQVVKEFHSEDAATAVSETPQESD----SVAATTMASHHAGHRHWAERVKREREMERKFHGKSGGRSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKKRKPMVTTVPWRRPGPYEKGVVHEDVLQLEVESSEAESQGARTRAGLEQVYLSSGDIPSTPAEPDAASFLPVDEVQM--YKIPFYMESELEQMQAEAPKEQQQQ 600          
BLAST of mRNA_P-canaliculata_contig9625.23665.1 vs. uniprot
Match: A0A6H5K714_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K714_9PHAE)

HSP 1 Score: 414 bits (1065), Expect = 1.310e-127
Identity = 361/732 (49.32%), Postives = 408/732 (55.74%), Query Frame = 0
Query:    2 ATDFFKNRFKRHNPSKNI---ASGSESAARG-----GGFTAIAEALTPAEASLLKALNTDVAGGNG------VAGLSGLDRLMRVMINAPDREARALCLELLIRSKDDADVMKGFVERRGLTFIKGWLAEETTSVAMIKLLLSVAKVLPVTYSSLKQSDAGRALKALYKHADPGVKKQAKAVIAHWKNELVRDEGEIAKHREKLDALHDDIKA----------------------VRAASGLGTTTGGS-----------------------------------------------------------AAGTGS----------------------------------ARSFPGRKFPTRGSTRGRGAAAXXXXXXXXSRGSVLRGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGGILKVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEGSSDVA-IPAGGGGAVLSAPGPPPIVSLDEMARADAAEKKRKRKARPAGKKVGWADRAGKILQIVKEFHPEDAALVVSEEPQEETPGXXXXXXXXXXXXXXXXKHWAERVKREREMERKFHGKSGGRARG-------TGGEDEGAGPGARGVELAAAS--------RRRTMMPAVSWRRPGLYQEGVVHEFVMTLEVESSEAEGQAARTRAGLEVVYLSSGDIPPSPAEPDAASFLPADGTHSSPYEIPFYMETELEQMQAD 588
            ++DFF+ R+KR N  + +   A G  +A  G     GG     E LTPAE SLLK L   VAGG G      VAG +GLDRLMRVMINAPDREARALCLELL+RSK D +VMK FVERRGL FIKGWLAEET S+ M+KLLL+VAKVLPVTYSSL QSDAG+ALKAL KHAD  ++KQAKAVI+HW+  LV D+GEIAKHR++LD LHD +KA                       RA S      GGS                                                           A GTGS                                  AR F GRK        GRG             G+    G       XXXXXXXXXXXX  XXXXXXX   ILKV+                  XXXXXXXXXXXXXXXXXXXXXXXXXXX       A  PA    A + + GPPPIVSLDEMARA++ EKKR RKA+PAGKKVGWADRAG+ LQ+VKEFH EDAA  VSE PQE                    +HWAERVKREREMERKFHGKSGGR++G       + G++E                       +R+ M+ AV WRRPG Y++GVVHE V+ LEVESSEAE Q ARTRAGLE VYLSSGDIP +PAEPDAASFLP D      Y+IPFYME+ELEQMQA+
Sbjct:   83 SSDFFRARYKRQNVGRGVGALAPGWAAALEGSQEGSGGGARAREVLTPAENSLLKTLGDAVAGGEGAGARGGVAGAAGLDRLMRVMINAPDREARALCLELLLRSKGDEEVMKAFVERRGLMFIKGWLAEETKSINMMKLLLTVAKVLPVTYSSLMQSDAGKALKALNKHADSDIRKQAKAVISHWRTALVSDKGEIAKHRKQLDDLHDKLKAKQDAEKKAKAELADAEKRRRDLARAQSRPPNGVGGSPITAPPPXXXXXXXXXXXXXXXXXXXXXXXXXXXPAAKGVSAASKPGRDPPAAAADSSGAPGTGSXXXXXXXXXXXXXXXXXXXXSETGAAAXXXXGGAARYFVGRKLA------GRGPGGRVRRPTVAFSGTPAGQGTGKGDRGXXXXXXXXXXXXAGXXXXXXXXXXILKVTAVSTAATAGGQDGTAAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAASAPAASRSAGIGS-GPPPIVSLDEMARAESEEKKRLRKAKPAGKKVGWADRAGRTLQVVKEFHSEDAATAVSETPQESD----SVVAATMASHHAGHRHWAERVKREREMERKFHGKSGGRSKGKSDHGRASAGDEEXXXXXXXXXXXXXXXXXXXXXXXKRKPMVTAVPWRRPGPYEKGVVHEDVLQLEVESSEAESQGARTRAGLEQVYLSSGDIPSTPAEPDAASFLPVDEVQM--YKIPFYMESELEQMQAE 801          
BLAST of mRNA_P-canaliculata_contig9625.23665.1 vs. uniprot
Match: A0A433PUA3_9FUNG (Serine/threonine-protein phosphatase 1 regulatory subunit 10 n=4 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433PUA3_9FUNG)

HSP 1 Score: 58.2 bits (139), Expect = 4.140e-5
Identity = 42/154 (27.27%), Postives = 80/154 (51.95%), Query Frame = 0
Query:   50 LNTDVAGGNGVAGLSGLDRLMRVMINAPDREARALCLELLIRSKDDADVMKGFVERRGLTFIKGWLAEETTS--VAMIKLLLSVAKVLPVTYSSLKQSDAGRALKALYKHADPG-VKKQAKAVIAHWKNELVR----DEGEIAKHREKLDALHD 196
            L+T V    G+   + L  L+++M N      R++ L L++ + +D +++K FV  +GL  ++ WL E   S   A++  LL   K LP+   +LK +  GR +K++ K+++   VK+    ++  WK  + R       E+ + R++ D+  D
Sbjct:  130 LSTLVGPTGGIPSPTSLKHLVQIMRNETRLVNRSVMLTLIMNT-NDTNMLKSFVNSKGLAILRAWLVETAKSDNAALLVKLLETLKHLPIDLEALKTTGLGRVVKSMTKNSEKTEVKQLINELMQQWKQLIERVAETKTDEVKRTRDQSDSGSD 282          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9625.23665.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LNV8_ECTSI3.320e-13249.77TFIIS N-terminal domain-containing protein (Fragme... [more]
A0A6H5K714_9PHAE1.310e-12749.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A433PUA3_9FUNG4.140e-527.27Serine/threonine-protein phosphatase 1 regulatory ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 170..204
NoneNo IPR availablePANTHERPTHR46557FAMILY NOT NAMEDcoord: 271..580
coord: 90..175
IPR035441TFIIS/LEDGF domain superfamilyGENE3D1.20.930.10coord: 108..177
e-value: 1.9E-7
score: 32.9
IPR035441TFIIS/LEDGF domain superfamilySUPERFAMILY47676Conserved domain common to transcription factors TFIIS, elongin A, CRSP70coord: 99..177
IPR017923Transcription factor IIS, N-terminalPFAMPF08711Med26coord: 134..175
e-value: 1.8E-6
score: 27.9
IPR017923Transcription factor IIS, N-terminalPROSITEPS51319TFIIS_Ncoord: 109..180
score: 13.539

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig9625contigP-canaliculata_contig9625:275..8810 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig9625.23665.1mRNA_P-canaliculata_contig9625.23665.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig9625 275..8810 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig9625.23665.1 ID=prot_P-canaliculata_contig9625.23665.1|Name=mRNA_P-canaliculata_contig9625.23665.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=596bp
NATDFFKNRFKRHNPSKNIASGSESAARGGGFTAIAEALTPAEASLLKAL
NTDVAGGNGVAGLSGLDRLMRVMINAPDREARALCLELLIRSKDDADVMK
GFVERRGLTFIKGWLAEETTSVAMIKLLLSVAKVLPVTYSSLKQSDAGRA
LKALYKHADPGVKKQAKAVIAHWKNELVRDEGEIAKHREKLDALHDDIKA
VRAASGLGTTTGGSAAGTGSARSFPGRKFPTRGSTRGRGAAAIGAGSGRG
SRGSVLRGGGGVAAGRGSATAATAAATISPSPAPAGRSGGILKVSAPASV
TATAAPATKVADSGTGAGEVVSLVAPAPAPTKAPAPAPASVEGSSDVAIP
AGGGGAVLSAPGPPPIVSLDEMARADAAEKKRKRKARPAGKKVGWADRAG
KILQIVKEFHPEDAALVVSEEPQEETPGANEAAALLQHQQHHHHKHWAER
VKREREMERKFHGKSGGRARGTGGEDEGAGPGARGVELAAASRRRTMMPA
VSWRRPGLYQEGVVHEFVMTLEVESSEAEGQAARTRAGLEVVYLSSGDIP
PSPAEPDAASFLPADGTHSSPYEIPFYMETELEQMQADQEQEKEQQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR035441TFIIS/LEDGF_dom_sf
IPR017923TFIIS_N