prot_P-canaliculata_contig962.23658.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig962.23658.1
Unique Nameprot_P-canaliculata_contig962.23658.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length294
Homology
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BLAST of mRNA_P-canaliculata_contig962.23658.1 vs. uniprot
Match: D7FQK1_ECTSI (BRISC and BRCA1-A complex member 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQK1_ECTSI)

HSP 1 Score: 374 bits (961), Expect = 2.010e-126
Identity = 180/306 (58.82%), Postives = 224/306 (73.20%), Query Frame = 0 
Query:    1 MPATEAEVGKGFTQGILETYDLYRLSALTSLKSWDLFRRPESLLSLAVDIKHLRRDHEVKKLANSPIKSAY-FHFESVRDRQEEVEVLVSRAGVRMVFPLWKDPKEKKEEKEGDY--------------EAPDAGPVFVYGRASIRIRLEWTEIDGKRP-DVRIIFPPEAQGLARGFRQPGWTSEMTLYDYLPRVQAAVARPWRERKQLVAAFAARHCVLEYDAQDFTSINLFMKVKIDNFVHLRILRLDIGPDFPHYPPLMTLCDALSDQSWPLDRRDYLYSPRWDSERMVTELYKYAAGEVANV 290
             P+TE +V +GFTQG+ E Y+ YRL++L SLK WDLFRRP SL +LA+DIK LRR+HE++KL NSP+ SA  FH   +RDRQE++E+LVSRAG R+ FPLW DP                         +A   GP+FVYGRA +R+R+EWT++DG RP DVR++FP EAQGL  GFRQP W+SE TL DYLPR QAAV  PW ERK LVA  A RH VLEYDAQDFT ++LFMKVK+DN + LRILR+DIGPDFP+ PP +TLCD+LS++ W LDRR+Y YSPRWD+ RM TELY +A   ++ +
Sbjct:   82 FPSTEGDVNRGFTQGMHEAYNTYRLASLESLKKWDLFRRPSSLAALALDIKQLRRNHEIQKLENSPLASAMSFHLGYLRDRQEDIELLVSRAGARLAFPLWPDPTAAAAXXXXXXXXXXXXXXXXXXXXDAEGEGPMFVYGRAGVRVRMEWTQVDGNRPPDVRVLFPQEAQGLTMGFRQPSWSSETTLGDYLPRAQAAVVTPWSERKNLVAMLAKRHNVLEYDAQDFTMLHLFMKVKVDNLIFLRILRVDIGPDFPNNPPQLTLCDSLSEKCWSLDRRNYRYSPRWDAARMATELYTHAVDSLSKL 387
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BLAST of mRNA_P-canaliculata_contig962.23658.1 vs. uniprot
Match: A0A6S7JT93_PARCT (BRISC and BRCA1-A complex member 2 n=3 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JT93_PARCT)

HSP 1 Score: 55.1 bits (131), Expect = 1.010e-5
Identity = 39/138 (28.26%), Postives = 65/138 (47.10%), Query Frame = 0 
Query:  160 GFRQPGWTS-EMTLYDYLPRVQA-------AVARPWRERKQLVAAFAARH--CVLEYDAQDFTSINLFMKVKIDNFVHLRILRLDIGPDFPHYPPLM---TLCDALSDQSWPLDRRDYLYSPRWDSERMVTELYKYAA 284
            G + P W   +  L  Y+  V          + + +  R+  VAAF + +  CVLEYDA+ F++I+  M+  ++NF    IL ++I  +FP   P+    ++    +D+ +      Y YSPRW  + M      Y A
Sbjct:    3 GVKYPSWIDGDECLVSYILAVHGYFNEKIDEIIKSYERRRNYVAAFLSAYGTCVLEYDAEAFSTISFLMQ--LENF--FCILTIEIVGNFPEEQPVFVMKSIYHCFADEPYHAIDDTYPYSPRWSPDEMANRARSYLA 136
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig962.23658.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQK1_ECTSI2.010e-12658.82BRISC and BRCA1-A complex member 2 n=2 Tax=Ectocar... [more]
A0A6S7JT93_PARCT1.010e-528.26BRISC and BRCA1-A complex member 2 n=3 Tax=Paramur... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010358BRCA1-A complex subunit BREPFAMPF06113BREcoord: 161..248
e-value: 1.6E-7
score: 30.5
IPR010358BRCA1-A complex subunit BREPANTHERPTHR15189FAMILY NOT NAMEDcoord: 25..290

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig962contigP-canaliculata_contig962:24741..27528 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig962.23658.1mRNA_P-canaliculata_contig962.23658.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig962 23815..27674 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig962.23658.1 ID=prot_P-canaliculata_contig962.23658.1|Name=mRNA_P-canaliculata_contig962.23658.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=294bp
MPATEAEVGKGFTQGILETYDLYRLSALTSLKSWDLFRRPESLLSLAVDI
KHLRRDHEVKKLANSPIKSAYFHFESVRDRQEEVEVLVSRAGVRMVFPLW
KDPKEKKEEKEGDYEAPDAGPVFVYGRASIRIRLEWTEIDGKRPDVRIIF
PPEAQGLARGFRQPGWTSEMTLYDYLPRVQAAVARPWRERKQLVAAFAAR
HCVLEYDAQDFTSINLFMKVKIDNFVHLRILRLDIGPDFPHYPPLMTLCD
ALSDQSWPLDRRDYLYSPRWDSERMVTELYKYAAGEVANVLAA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010358BRE