prot_P-canaliculata_contig96054.23642.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-canaliculata_contig96054.23642.1
Unique Name	prot_P-canaliculata_contig96054.23642.1
Type	polypeptide
Organism	Pelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length	137

Homology

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BLAST of mRNA_P-canaliculata_contig96054.23642.1 vs. uniprot
Match: A0A3M1M8N9_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3M1M8N9_9PROT)

HSP 1 Score: 58.2 bits (139), Expect = 5.520e-8
Identity = 56/133 (42.11%), Postives = 72/133 (54.14%), Query Frame = 0

Query:    2 GDSFLTLSGGGRAGLVAI--VVVAGLALFAASAVKTRVLR--RAFARRAALAPAAADLVATTALALVALAIAPQLFYAWYRQLIPGLPAQLVVEGLPSVDRL-GELAFPAASGSLAAHAAALFLWTLVLAALL 129
            GDSF TL    RAGL A+   + AGL L AA  +  R  R  R FA R         L+A+ AL  + L ++PQ++Y ++R +IPGLP Q+V+   P   RL G LAF     SLA HA A   W L+  A L
Sbjct:   14 GDSFWTLGLAERAGLAALSLALAAGL-LLAARVLHRRCGRGWRGFALR---------LLASLALYWLFLWLSPQIYYTYFRAIIPGLPDQIVIGSPPGPGRLAGLLAFSPPRPSLAEHARAALGWALIALAFL 136

The following BLAST results are available for this feature:

BLAST of mRNA_P-canaliculata_contig96054.23642.1 vs. uniprot

BLAST of mRNA_P-canaliculata_contig96054.23642.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A3M1M8N9_9PROT	5.520e-8	42.11	Uncharacterized protein n=1 Tax=Alphaproteobacteri...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 34..53
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..13
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 78..110
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 54..77
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 111..134
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 14..33
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 135..137
None	No IPR available	TMHMM	TMhelix		coord: 113..135
None	No IPR available	TMHMM	TMhelix		coord: 15..33
None	No IPR available	TMHMM	TMhelix		coord: 46..68

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-canaliculata_contig96054	contig	P-canaliculata_contig96054:201..611 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Pelvetia canaliculata dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-canaliculata_contig96054.23642.1	mRNA_P-canaliculata_contig96054.23642.1	Pelvetia canaliculata dioecious	mRNA	P-canaliculata_contig96054 201..611 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-canaliculata_contig96054.23642.1 ID=prot_P-canaliculata_contig96054.23642.1|Name=mRNA_P-canaliculata_contig96054.23642.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=137bp
AGDSFLTLSGGGRAGLVAIVVVAGLALFAASAVKTRVLRRAFARRAALAP
AAADLVATTALALVALAIAPQLFYAWYRQLIPGLPAQLVVEGLPSVDRLG
ELAFPAASGSLAAHAAALFLWTLVLAALLGWLLAVRR