prot_P-canaliculata_contig9552.23572.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig9552.23572.1
Unique Nameprot_P-canaliculata_contig9552.23572.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length111
Homology
[Close]
BLAST of mRNA_P-canaliculata_contig9552.23572.1 vs. uniprot
Match: A0A6H5JNC2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNC2_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 1.720e-12
Identity = 30/42 (71.43%), Postives = 35/42 (83.33%), Query Frame = 0 
Query:    1 NAKDLWVQETTVSPPKPVSHRWSSRFSRNQILLLIWQGLKLF 42
            NA+DLW+QET VSPPKPVSHRWSSR+ RN  L+L WQ +K F
Sbjct:   93 NARDLWLQETKVSPPKPVSHRWSSRYVRNNALVLNWQQMKTF 134
[Close]
BLAST of mRNA_P-canaliculata_contig9552.23572.1 vs. uniprot
Match: A0A6H5KSI8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSI8_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 3.830e-12
Identity = 30/42 (71.43%), Postives = 35/42 (83.33%), Query Frame = 0 
Query:    1 NAKDLWVQETTVSPPKPVSHRWSSRFSRNQILLLIWQGLKLF 42
            NA+DLW+QET VSPPKPVSHRWSSR+ RN  L+L WQ +K F
Sbjct:  190 NARDLWLQETKVSPPKPVSHRWSSRYVRNNALVLNWQQMKTF 231
[Close]
BLAST of mRNA_P-canaliculata_contig9552.23572.1 vs. uniprot
Match: A0A6H5JW81_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW81_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 1.830e-9
Identity = 29/43 (67.44%), Postives = 33/43 (76.74%), Query Frame = 0 
Query:    1 NAKDLWVQETT-VSPPKPVSHRWSSRFSRNQILLLIWQGLKLF 42
            NAKDLW+QET  V+PPKP SHRWSSRF RN  L+  WQ +K F
Sbjct:   93 NAKDLWLQETGGVAPPKPPSHRWSSRFERNDCLVRSWQQMKSF 135
[Close]
BLAST of mRNA_P-canaliculata_contig9552.23572.1 vs. uniprot
Match: A0A6H5KEG8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEG8_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 2.710e-9
Identity = 29/43 (67.44%), Postives = 33/43 (76.74%), Query Frame = 0 
Query:    1 NAKDLWVQETT-VSPPKPVSHRWSSRFSRNQILLLIWQGLKLF 42
            NAKDLW+QET  V+PPKP SHRWSSRF RN  L+  WQ +K F
Sbjct:  473 NAKDLWLQETGGVAPPKPPSHRWSSRFERNDCLVRNWQQMKSF 515
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9552.23572.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JNC2_9PHAE1.720e-1271.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSI8_9PHAE3.830e-1271.43Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JW81_9PHAE1.830e-967.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEG8_9PHAE2.710e-967.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig9552contigP-canaliculata_contig9552:2848..3330 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig9552.23572.1mRNA_P-canaliculata_contig9552.23572.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig9552 2848..3394 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig9552.23572.1 ID=prot_P-canaliculata_contig9552.23572.1|Name=mRNA_P-canaliculata_contig9552.23572.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=111bp
NAKDLWVQETTVSPPKPVSHRWSSRFSRNQILLLIWQGLKLFRRQVHFDR
GVQVQGGQVVESRPCTCSAGWHPPRARVAAGVLHDCGRRDPPDACHTPRG
GRRVSATCSV*
back to top