prot_P-canaliculata_contig95345.23560.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig95345.23560.1
Unique Nameprot_P-canaliculata_contig95345.23560.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length182
Homology
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BLAST of mRNA_P-canaliculata_contig95345.23560.1 vs. uniprot
Match: UPI0019C2EABF (Uncharacterized protein n=1 Tax=Pirellulaceae bacterium TaxID=2699754 RepID=UPI0019C2EABF)

HSP 1 Score: 54.7 bits (130), Expect = 1.230e-5
Identity = 43/143 (30.07%), Postives = 71/143 (49.65%), Query Frame = 0 
Query:   27 QSEASLILREQIQQCLKNFVDETSGPG-ASRFVSFEDSYVQRNLVTEETVIPLE---TVDPATKRKSKRYAGYAKLRFDNEFADLVRKRYEESFKTRRLQWTGLISLLALTWLGAAYGYLRIDQATRHFYTRRLQTVTIIACL 165
            ++EA   L + ++     ++ E  G   A + V +    ++R+LV +E V   +   ++ P        +  +A L+F  EF   V  ++ +     RL  TGLI+  AL +LG  + Y R+D ATR +YT RLQ +T  A L
Sbjct:  132 EAEADRALNDVLKTKTDEYIAEQLGSTLAPQLVGYNVQKIKRDLVRQENVYHEQIGVSIGPM-------HQVHALLQFGPEFRQEVTHKWTDLTAYYRLLQTGLIAAGALLFLGTVFSYFRLDNATRGYYTGRLQFMTAAAIL 267
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig95345.23560.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI0019C2EABF1.230e-530.07Uncharacterized protein n=1 Tax=Pirellulaceae bact... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 179..181
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 145..155
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 121..144
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..120
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 156..178
NoneNo IPR availableTMHMMTMhelixcoord: 121..143
NoneNo IPR availableTMHMMTMhelixcoord: 156..178

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig95345contigP-canaliculata_contig95345:534..1079 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig95345.23560.1mRNA_P-canaliculata_contig95345.23560.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig95345 534..1079 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig95345.23560.1 ID=prot_P-canaliculata_contig95345.23560.1|Name=mRNA_P-canaliculata_contig95345.23560.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=182bp
PQWAVEGNRIEDDAIFKVLNTEEFFLQSEASLILREQIQQCLKNFVDETS
GPGASRFVSFEDSYVQRNLVTEETVIPLETVDPATKRKSKRYAGYAKLRF
DNEFADLVRKRYEESFKTRRLQWTGLISLLALTWLGAAYGYLRIDQATRH
FYTRRLQTVTIIACLIPLLVVVYFEIILEIY*
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