prot_P-canaliculata_contig95123.23535.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig95123.23535.1
Unique Nameprot_P-canaliculata_contig95123.23535.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length104
Homology
BLAST of mRNA_P-canaliculata_contig95123.23535.1 vs. uniprot
Match: A0A7X0H3R7_9BACT (Putative RNA-binding Zn-ribbon protein involved in translation (DUF1610 family) n=1 Tax=Algisphaera agarilytica TaxID=1385975 RepID=A0A7X0H3R7_9BACT)

HSP 1 Score: 131 bits (329), Expect = 2.330e-35
Identity = 62/104 (59.62%), Postives = 74/104 (71.15%), Query Frame = 0
Query:    1 MSFAFPAVIPVRLTPSGRIDGDLACPSCGYNLRMQAIHGACPECGQTIEGVVRDDQDQISRADPHWRTRIGRGAVWLHRSVLVAPVGVLPGLIGAAAALWLLTT 104
            MS AFPA IPVRL   G ID D+ CP+CGYNLRMQ +  ACPECG  ++ V RDD D++ RADP W  RI RG  WLH + L   + V+PG++ AAAALWLLTT
Sbjct:    1 MSSAFPATIPVRLNAEGYIDIDVHCPTCGYNLRMQKVANACPECGAPVDVVERDDADRLERADPGWLKRIERGTGWLHGAALATVLFVVPGIVWAAAALWLLTT 104          
BLAST of mRNA_P-canaliculata_contig95123.23535.1 vs. uniprot
Match: A0A518BZ90_9BACT (Uncharacterized protein n=1 Tax=Mucisphaera calidilacus TaxID=2527982 RepID=A0A518BZ90_9BACT)

HSP 1 Score: 66.2 bits (160), Expect = 1.410e-10
Identity = 34/74 (45.95%), Postives = 41/74 (55.41%), Query Frame = 0
Query:   11 VRLTPSGRIDGDLACPSCGYNLRMQAIHGACPECGQTIEGVVRDDQD-QISRADPHWRTRIGRGAVWLHRSVLV 83
            VR+   GRID DL C  CGYNLRM +  G C ECG    GV R  Q  ++ + DP W  RI  G  W+   +LV
Sbjct:   12 VRVDTEGRIDQDLPCAGCGYNLRMSSAEGVCAECGV---GVRRSMQVWRLGQCDPLWLRRISAGFYWIAVGILV 82          
BLAST of mRNA_P-canaliculata_contig95123.23535.1 vs. uniprot
Match: A0A7V4P340_9BACT (Uncharacterized protein n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A7V4P340_9BACT)

HSP 1 Score: 62.8 bits (151), Expect = 2.000e-9
Identity = 34/94 (36.17%), Postives = 47/94 (50.00%), Query Frame = 0
Query:   11 VRLTPSGRIDGDLACPSCGYNLRMQAIHGACPECGQTIEGVVRDDQDQISRADPHWRTRIGRGAVWL------HRSVLVAPVGVLPGLIGAAAA 98
            V L   GR++ D++C +CGYNLR     G CPEC   +   +  D  + S  DP W  R+ RG VW+      +  VL   VG +  L+G   A
Sbjct:   11 VALGADGRLNTDISCRACGYNLRGALPDGVCPECATAVGRSIHGDLLRFS--DPQWVGRLSRGMVWIVAGIVINAVVLCLGVGTVGALVGTGRA 102          
BLAST of mRNA_P-canaliculata_contig95123.23535.1 vs. uniprot
Match: A0A7V4NZ55_9BACT (Uncharacterized protein n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A7V4NZ55_9BACT)

HSP 1 Score: 58.5 bits (140), Expect = 6.220e-8
Identity = 28/62 (45.16%), Postives = 36/62 (58.06%), Query Frame = 0
Query:   14 TPSG--RIDGDLACPSCGYNLRMQAIHGACPECGQTIEGVVRDDQDQISRADPHWRTRIGRG 73
            TP G  R+  D+AC  CGYNLRMQA  G CPECG ++   +  D   ++ AD  W  R+  G
Sbjct:    7 TPPGPHRVQEDIACLRCGYNLRMQASDGHCPECGASVRRTLAGDT--LADADRDWLGRVSSG 66          
BLAST of mRNA_P-canaliculata_contig95123.23535.1 vs. uniprot
Match: A0A7X0H7Z0_9BACT (Uncharacterized protein n=1 Tax=Algisphaera agarilytica TaxID=1385975 RepID=A0A7X0H7Z0_9BACT)

HSP 1 Score: 57.4 bits (137), Expect = 2.000e-7
Identity = 31/85 (36.47%), Postives = 42/85 (49.41%), Query Frame = 0
Query:   13 LTPSGRIDGDLACPSCGYNLRMQAIHGACPECGQTIEGVVRDDQDQISRADPHWRTRIGRGAVWLHRSVLVAPV-GVLPGLIGAA 96
            L   GR+D +L C  CGYNLR     G CPECG  +   +  D   +   D +W   + RG  W+   +LV+ V G+   L G A
Sbjct:   33 LDNQGRVDCELLCRQCGYNLRTMDARGDCPECGTAVHWSLIGDL--LRFGDANWLRTLARGMAWVLAVLLVSIVTGIFIELFGVA 115          
BLAST of mRNA_P-canaliculata_contig95123.23535.1 vs. uniprot
Match: A0A3M1QWU1_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M1QWU1_9BACT)

HSP 1 Score: 51.6 bits (122), Expect = 2.220e-5
Identity = 31/81 (38.27%), Postives = 40/81 (49.38%), Query Frame = 0
Query:   18 RIDGDLACPSCGYNLRMQAIHGACPECGQTIEGVVRDDQDQISRADPHWRTRIGRGAVWLHRSVLVAPVGVLPGLIGAAAA 98
            RID DLAC  CGYN+R     G CPECG +++  VR     ++ A   W  R  R        +L A V ++ G I  A A
Sbjct:   12 RIDADLACAGCGYNVRSLPRDGRCPECGHSVDDSVR--AGWLAFAPRGWLERTARAV----EQLLAACVALIGGWILVALA 86          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig95123.23535.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A7X0H3R7_9BACT2.330e-3559.62Putative RNA-binding Zn-ribbon protein involved in... [more]
A0A518BZ90_9BACT1.410e-1045.95Uncharacterized protein n=1 Tax=Mucisphaera calidi... [more]
A0A7V4P340_9BACT2.000e-936.17Uncharacterized protein n=1 Tax=Phycisphaerae bact... [more]
A0A7V4NZ55_9BACT6.220e-845.16Uncharacterized protein n=1 Tax=Phycisphaerae bact... [more]
A0A7X0H7Z0_9BACT2.000e-736.47Uncharacterized protein n=1 Tax=Algisphaera agaril... [more]
A0A3M1QWU1_9BACT2.220e-538.27Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 81..102
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 103..104
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..80
NoneNo IPR availableTMHMMTMhelixcoord: 81..103

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig95123contigP-canaliculata_contig95123:209..520 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig95123.23535.1mRNA_P-canaliculata_contig95123.23535.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig95123 209..520 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig95123.23535.1 ID=prot_P-canaliculata_contig95123.23535.1|Name=mRNA_P-canaliculata_contig95123.23535.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=104bp
MSFAFPAVIPVRLTPSGRIDGDLACPSCGYNLRMQAIHGACPECGQTIEG
VVRDDQDQISRADPHWRTRIGRGAVWLHRSVLVAPVGVLPGLIGAAAALW
LLTT
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