prot_P-canaliculata_contig95119.23533.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig95119.23533.1
Unique Nameprot_P-canaliculata_contig95119.23533.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length138
Homology
BLAST of mRNA_P-canaliculata_contig95119.23533.1 vs. uniprot
Match: A0A6H5LRB6_9PHAE (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LRB6_9PHAE)

HSP 1 Score: 142 bits (357), Expect = 7.200e-38
Identity = 76/130 (58.46%), Postives = 92/130 (70.77%), Query Frame = 0
Query:    1 MAKMIRKDLEAKLAALNGAEWDSMSEDSIGDEVTPEDIEVVIAGDGEDDEETDEPPIPLRRSTSQTGKRVGKKVAACVVPLGPAGQPSGVIYIGHIPHGFYEEAMNGFFKQFGDVVRLRIARSKKTTRCK 130
            MAK+IR+DLE KLAAL GAEWDSMSE  +              G+  D +E   PP+P  R   + G++   K    VVP+GPAG+PSGV+YIGHIPHGFYEEAMNGFFKQFGDV+R+RI+RSKK+ RCK
Sbjct:    1 MAKVIRRDLEQKLAALEGAEWDSMSESDLS------------GGEASDGDELKPPPLP--RHAKKAGRK--GKGGGSVVPVGPAGEPSGVVYIGHIPHGFYEEAMNGFFKQFGDVIRVRISRSKKSGRCK 114          
BLAST of mRNA_P-canaliculata_contig95119.23533.1 vs. uniprot
Match: A0A7S2H2Y4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H2Y4_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.170e-14
Identity = 49/119 (41.18%), Postives = 63/119 (52.94%), Query Frame = 0
Query:    8 DLEAKLAALNGAEWDSMSEDSIGDEVTPEDIEVVIAGDGEDDEETDEPPIPLRRSTSQTGKRVGKKVAACVVPLGPAGQPSGVIYIGHIPHGFYEEAMNGFFKQFGDVVRLRIARSKKT 126
            +LE +LAAL G EWDS SE+       PE                    I L +S  ++ KR  K        +    + S V+YIGHIPHGFYE+ M G+F QFG+V RLR++RSKKT
Sbjct:    8 ELEKRLAALEGDEWDSASEEETETPNNPESF------------------IELPKSVVESTKRKIKSRKGKTADVNGV-KMSAVVYIGHIPHGFYEDQMKGYFSQFGNVRRLRLSRSKKT 107          
BLAST of mRNA_P-canaliculata_contig95119.23533.1 vs. uniprot
Match: A0A225WKR2_9STRA (FHA domain-interacting nucleolar phosphoprotein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WKR2_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 4.940e-14
Identity = 45/123 (36.59%), Postives = 63/123 (51.22%), Query Frame = 0
Query:    4 MIRKDLEAKLAALNGAEWDSMSEDSIGDEVTPEDIEVVIAGDGEDDEETDEPPIPLRRSTSQTGKRVGKKVAACVVPLGPAGQPSGVIYIGHIPHGFYEEAMNGFFKQFGDVVRLRIARSKKT 126
            M+ K + A+L  L G EWDS S++           +VV   D          P+  +R +    K+    +           QPS VIY+G IPHGFYE+ M GFFKQFG V R+R++R+K+T
Sbjct:    1 MVNKKVAAQLEKLQGDEWDSDSDNEASSNTFDASNDVVALPDAS-------APVSKKRKSKMQRKKEAAALLQAQKTEAKKNQPSNVIYLGRIPHGFYEKQMLGFFKQFGVVRRVRLSRNKRT 116          
BLAST of mRNA_P-canaliculata_contig95119.23533.1 vs. uniprot
Match: A0A5A8DFN2_CAFRO (RRM domain-containing protein n=2 Tax=Sar TaxID=2698737 RepID=A0A5A8DFN2_CAFRO)

HSP 1 Score: 76.3 bits (186), Expect = 1.240e-13
Identity = 33/52 (63.46%), Postives = 41/52 (78.85%), Query Frame = 0
Query:   79 VPLGPAGQPSGVIYIGHIPHGFYEEAMNGFFKQFGDVVRLRIARSKKTTRCK 130
            +P GP    +GV+Y+GH+PHGFYEEA+ GFF QFG V R+R+ARSKKT R K
Sbjct:   49 LPAGPTPTTAGVVYVGHLPHGFYEEAIRGFFAQFGRVTRVRVARSKKTARAK 100          
BLAST of mRNA_P-canaliculata_contig95119.23533.1 vs. uniprot
Match: A0A7S2P320_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P320_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 2.110e-13
Identity = 47/130 (36.15%), Postives = 68/130 (52.31%), Query Frame = 0
Query:    1 MAKMIRKDLEAKLAALNGAEWDSMSEDSIGDEVTPEDIEVVIAGDGEDDEETDEPPIPLRRSTSQTGKRVGKKVAACVVPLGPAGQPSGVIYIGHIPHGFYEEAMNGFFKQFGDVVRLRIARSKKTTRCK 130
            M+K ++++LEAKLAA+NG +WDS  E+   DE   +   +    +GE  + T+                  K+            + S V+YIGH+P GF E  M GFF+QFG  + LR+ RSKKT +CK
Sbjct:    1 MSKTLQRNLEAKLAAMNGPDWDSSDEE---DEAVTQSKPMEFLDNGEATDPTNGSTXXXXXXXXXXXXXXXKQEQL------KKSEASNVVYIGHLPIGFEEHQMKGFFEQFGSTLNLRVNRSKKTGKCK 121          
BLAST of mRNA_P-canaliculata_contig95119.23533.1 vs. uniprot
Match: A0A6G0XVL6_9STRA (RRM domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XVL6_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 2.140e-13
Identity = 46/125 (36.80%), Postives = 66/125 (52.80%), Query Frame = 0
Query:    6 RKDLEAKLAALNGAEWDSMSEDSIGDEVTPEDIEVVIAGDGEDDEETDEPPIPLRRSTSQTGKRVGKKVAACVVPLGPAGQPSGVIYIGHIPHGFYEEAMNGFFKQFGDVVRLRIARSKKTTRCK 130
            +K +E +LA L GAEWDS  ED             + A   ++ E   E  +     T +T + + K  A        A  PS  I+IG IPHGFYE+ M GFF QFG++ RL+++R+KK+ + K
Sbjct:  217 KKSIEQQLAKLQGAEWDSDDED-------------MDASSAKEPEVNFEANVDFIELTKKTKQNLAKGAAPAATD---ASTPSSTIFIGRIPHGFYEKQMRGFFSQFGEIKRLKVSRNKKSGKSK 325          
BLAST of mRNA_P-canaliculata_contig95119.23533.1 vs. uniprot
Match: A0A397FA59_9STRA (RRM domain-containing protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397FA59_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 4.520e-13
Identity = 48/122 (39.34%), Postives = 64/122 (52.46%), Query Frame = 0
Query:   10 EAKLAALNGAEWDSMSEDSIGDEVTPEDIEVVIAGDGEDDEETDEPPIPLRRSTSQTGKRVGK-KVAACVVPLGPAGQPSGVIYIGHIPHGFYEEAMNGFFKQFGDVVRLRIARSKKTTRCK 130
            E +LA L GAEWDS  ED+         +    A   E  E   E  +     T +T + + K K AA     G     S  I+IG IPHGFYE+ M GFF QFGD+ RL+++R+KK+ + K
Sbjct:  190 EQQLAKLQGAEWDSDDEDTA--------VASTPASKKEQPELNFEANVDFVELTKKTKQNLAKSKGAAAAATEGAGATQSSTIFIGRIPHGFYEKQMRGFFSQFGDIKRLKVSRNKKSGKSK 303          
BLAST of mRNA_P-canaliculata_contig95119.23533.1 vs. uniprot
Match: R1DE27_EMIHU (RRM domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DE27_EMIHU)

HSP 1 Score: 72.4 bits (176), Expect = 4.890e-13
Identity = 36/55 (65.45%), Postives = 42/55 (76.36%), Query Frame = 0
Query:   72 KKVAACVVPLGPAGQPSGVIYIGHIPHGFYEEAMNGFFKQFGDVVRLRIARSKKT 126
            KK AA     GP+G  + V+Y+GHIPHGFYEE M GFF QFGDV RLR+AR+KKT
Sbjct:   16 KKRAASADKGGPSGSGT-VLYLGHIPHGFYEEQMRGFFSQFGDVTRLRLARNKKT 69          
BLAST of mRNA_P-canaliculata_contig95119.23533.1 vs. uniprot
Match: A0A485LLG1_9STRA (Aste57867_22445 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LLG1_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 6.020e-13
Identity = 49/125 (39.20%), Postives = 68/125 (54.40%), Query Frame = 0
Query:    6 RKDLEAKLAALNGAEWDSMSEDSIGDEVTPEDIEVVIAGDGEDDEETDEPPIPLRRSTSQTGKRVGKKVAACVVPLGPAGQPSGVIYIGHIPHGFYEEAMNGFFKQFGDVVRLRIARSKKTTRCK 130
            +K +E +LA L GAEWDS  ED +      E    V     E + E++   + L + T Q      K  AA       A  PS  I+IG IPHGFYE+ M GFF QFG++ RL+++R+KK+ + K
Sbjct:  134 KKSIEQQLAKLQGAEWDSDEEDLM------EAAAAVAKQQPEINFESNVDFVELTKKTKQNLSSKTKGTAATEA----ATAPSSTIFIGRIPHGFYEKQMKGFFSQFGEIKRLKVSRNKKSGKSK 248          
BLAST of mRNA_P-canaliculata_contig95119.23533.1 vs. uniprot
Match: A0A833QP88_9POAL (MKI67 FHA domain-interacting nucleolar phosphoprotein-like isoform X2 n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833QP88_9POAL)

HSP 1 Score: 72.0 bits (175), Expect = 1.030e-12
Identity = 36/60 (60.00%), Postives = 43/60 (71.67%), Query Frame = 0
Query:   71 GKKVAACVVPLGPAGQPSGVIYIGHIPHGFYEEAMNGFFKQFGDVVRLRIARSKKTTRCK 130
            GKK+   V P+      S V+YIGHIPHGFYEE M GFFKQFG + RLRIAR++KT + K
Sbjct:   41 GKKIVESVEPV----NKSTVLYIGHIPHGFYEEQMEGFFKQFGTIKRLRIARNRKTGKSK 96          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig95119.23533.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LRB6_9PHAE7.200e-3858.46RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S2H2Y4_9STRA1.170e-1441.18Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A225WKR2_9STRA4.940e-1436.59FHA domain-interacting nucleolar phosphoprotein n=... [more]
A0A5A8DFN2_CAFRO1.240e-1363.46RRM domain-containing protein n=2 Tax=Sar TaxID=26... [more]
A0A7S2P320_9STRA2.110e-1336.15Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A6G0XVL6_9STRA2.140e-1336.80RRM domain-containing protein n=1 Tax=Aphanomyces ... [more]
A0A397FA59_9STRA4.520e-1339.34RRM domain-containing protein n=3 Tax=Aphanomyces ... [more]
R1DE27_EMIHU4.890e-1365.45RRM domain-containing protein n=1 Tax=Emiliania hu... [more]
A0A485LLG1_9STRA6.020e-1339.20Aste57867_22445 protein n=1 Tax=Aphanomyces stella... [more]
A0A833QP88_9POAL1.030e-1260.00MKI67 FHA domain-interacting nucleolar phosphoprot... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 17..132
e-value: 4.1E-8
score: 35.3
NoneNo IPR availablePANTHERPTHR46754FAMILY NOT NAMEDcoord: 81..130
NoneNo IPR availablePANTHERPTHR46754:SF1MKI67 FHA DOMAIN-INTERACTING NUCLEOLAR PHOSPHOPROTEINcoord: 81..130
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 83..130

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig95119contigP-canaliculata_contig95119:571..984 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig95119.23533.1mRNA_P-canaliculata_contig95119.23533.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig95119 571..984 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig95119.23533.1 ID=prot_P-canaliculata_contig95119.23533.1|Name=mRNA_P-canaliculata_contig95119.23533.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=138bp
MAKMIRKDLEAKLAALNGAEWDSMSEDSIGDEVTPEDIEVVIAGDGEDDE
ETDEPPIPLRRSTSQTGKRVGKKVAACVVPLGPAGQPSGVIYIGHIPHGF
YEEAMNGFFKQFGDVVRLRIARSKKTTRCKASTRATL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf