prot_P-canaliculata_contig951.23529.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig951.23529.1
Unique Nameprot_P-canaliculata_contig951.23529.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length530
Homology
BLAST of mRNA_P-canaliculata_contig951.23529.1 vs. uniprot
Match: A0A6H5JZC9_9PHAE (RanBP2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZC9_9PHAE)

HSP 1 Score: 199 bits (506), Expect = 6.190e-52
Identity = 194/588 (32.99%), Postives = 254/588 (43.20%), Query Frame = 0
Query:    1 MYTNQKTKKRKVWSDGAVKCCRKRLRVCLYRWSEVLGVTDKLLGEIYLSMPEFDAFVTIGEPELEMEMYLVSLDGVIQQSCN-------------DNTFPDSDSNKSGGFVGGSGRKRKLLKPFKPPTRRAPPISTAAP-PGDAWG-LTEERNQQRYARDRDNDEMLPA---------RASFTGFGHVESLW-----ENDDTNAEETALGSTPDGDCWVDKDGDDCCSNNQAFDGG---DIEAEGR---AIGAQGIRMSGVPFGSSMSDYLWRQEDHPSAVTSLPRTQESSAD------SQLTVSKNSARSDAVEHGIGKRDGVSNSVENYSGGVVRREDLRDPRGSATWAISRETSVMTTEGEAHGLARIDLHGYSLELSGGSPIRKGNR-GRHWDPEGVSENAGGAHEPENGPRGENGDG---EVRSTEDILSLFGGFGASNQPHPGKTVGA-------STLLGSRQSAANLAAEGHAIDGRLHELRREGNTPPSGGGDLATGMRREQQASQSTGWKD----------AGAAEAAGASK---AALDWSCEMCGVRASPASTSCRVCGTLAPGIGIEHKDDLGDGSV 523
            MYTNQKTKKRK WSDGAVKCC KR RV LYRWSE LGVT+KLLGE+YL++P+++AF+T GEPELEME+Y+VSLDGVIQ   N                                 +KRK+ K FKPP RR P   T AP P D+WG L       R   DR  D   P+         R ++TGFGHVESLW     E+D  +  E   G   +        G         +D G   D+  + R   A+     R +G     S + ++W       ++    R   S+AD      +Q    +     +    G    DG S+ +E     + R  D  D  G  + +   E      +G             ++  +GG+  R+ N  GR     G +    G+   E   R   GDG   E+RST+DILSLFGGFG +     G   G        S   G  ++     A G A+             P  GG   A  MRR Q+ +++                GAA A GAS       DW+C  CGVR   +S SCRVCG     +  +     GD  V
Sbjct:  146 MYTNQKTKKRKTWSDGAVKCCPKRQRVSLYRWSEALGVTEKLLGEVYLTVPQYEAFITQGEPELEMELYIVSLDGVIQSDDNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKRKIFKAFKPPARREP---TPAPQPDDSWGRLPPGGVSLRGNGDRGGDGRFPSNRGGGKLSPRTTYTGFGHVESLWDEDEEEDDGQDRHEDGAGLADEHRAGWGMGGAAGPGYQNPYDVGNESDVLQQARSEAAVQPPYHRSTGTSAVGSTNTWMWGPPAGEHSLDGPLRPSRSTADFASGSPAQQQQQERGRHDETAVPGHHGEDGPSSYLER----LRRGNDDDDDVGRRSASHYPENQRCGRDG-------------AVTAAGGTGGREENTFGR-----GNAIGGAGSRVSEEVDRETPGDGARMEMRSTQDILSLFGGFGGTPSTQGGHDHGEQERETAESQWRGPTEAPLGSQASGDAL------------MPVGGGIRRAVDMRRTQKEARAAXXXXXXXXXVAGAVTGAASARGASNDDAVTGDWACGTCGVRGGSSSASCRVCGAKRQELRSDGVAQGGDDGV 696          
BLAST of mRNA_P-canaliculata_contig951.23529.1 vs. uniprot
Match: D8LRG4_ECTSI (RanBP2-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRG4_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 1.820e-25
Identity = 61/109 (55.96%), Postives = 78/109 (71.56%), Query Frame = 0
Query:    1 MYTNQKTKKRKVWSDGAVKCCRKRLRVCLYRWSEVLGVTDKLLGEIYLSMPEFDAFVTIGEPELEMEMYLVSLDGVIQQSCNDNTFPDSDSNKSGGFV---GGSGRKRK 106
            MYTNQKTKKRK WSDGAVKCC KR RV LYRWSE LGVT+KLLGE+YL++P+++AF+T GEPELEME+     DG      + + +P++      G V   GG+G + +
Sbjct:   90 MYTNQKTKKRKTWSDGAVKCCPKRQRVSLYRWSEALGVTEKLLGEVYLTVPQYEAFITQGEPELEMELLRRGDDGDDAGGRSASHYPENQRCGRDGAVTAAGGTGGREE 198          
BLAST of mRNA_P-canaliculata_contig951.23529.1 vs. uniprot
Match: A0A835YK32_9STRA (DUF2439 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK32_9STRA)

HSP 1 Score: 119 bits (299), Expect = 6.480e-25
Identity = 81/199 (40.70%), Postives = 103/199 (51.76%), Query Frame = 0
Query:    1 MYTNQKTKKRKVWSDGAVKCCRKRLRVCLYRWSEVLGVTDKLLGEIYLSMPEFDAFVTIGEPELEMEMYLVSLDGVIQQSCNDNTFPDSDSNKSGGFVGGSGRKRKLLKPFKPPTRRAPPISTAAPPGDAWGLTEERNQ---------------------QRYARDRDNDEMLPARASFTGFGHVESLWENDDTNAEET 178
            ++T+Q TKKRK W DGAV+CC KRL V LY+WS+ LGVT+K LGE +L+  EF+AFVT  EPELEME YLV+L+GV + +   N     DS +S    GG   K+  LK +K PT+    ++  A P D       R Q                     QR            A A   GFG + SLW  DD  A+ T
Sbjct:   14 LFTSQLTKKRKTWQDGAVRCCAKRLSVTLYKWSDTLGVTEKTLGESFLNAAEFNAFVTQKEPELEMEKYLVTLEGVTENTYTSN----GDSQQSS--EGGGAAKKPKLKGWKAPTK----VTVPARPSDDDVYERLRQQXXXXXXXXXXXXXXGYSGGMQQRAGAQAAVGNGRCAGAISNGFGRLSSLW--DDEGADRT 200          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig951.23529.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JZC9_9PHAE6.190e-5232.99RanBP2-type domain-containing protein n=1 Tax=Ecto... [more]
D8LRG4_ECTSI1.820e-2555.96RanBP2-type domain-containing protein n=1 Tax=Ecto... [more]
A0A835YK32_9STRA6.480e-2540.70DUF2439 domain-containing protein n=1 Tax=Tribonem... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D4.10.1060.10coord: 475..511
e-value: 1.6E-5
score: 26.0
IPR018838Domain of unknown function DUF2439PFAMPF10382DUF2439coord: 1..80
e-value: 5.8E-7
score: 29.7
IPR001876Zinc finger, RanBP2-typePROSITEPS50199ZF_RANBP2_2coord: 479..509
score: 8.366

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig951contigP-canaliculata_contig951:196..2176 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig951.23529.1mRNA_P-canaliculata_contig951.23529.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig951 190..2869 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig951.23529.1 ID=prot_P-canaliculata_contig951.23529.1|Name=mRNA_P-canaliculata_contig951.23529.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=530bp
MYTNQKTKKRKVWSDGAVKCCRKRLRVCLYRWSEVLGVTDKLLGEIYLSM
PEFDAFVTIGEPELEMEMYLVSLDGVIQQSCNDNTFPDSDSNKSGGFVGG
SGRKRKLLKPFKPPTRRAPPISTAAPPGDAWGLTEERNQQRYARDRDNDE
MLPARASFTGFGHVESLWENDDTNAEETALGSTPDGDCWVDKDGDDCCSN
NQAFDGGDIEAEGRAIGAQGIRMSGVPFGSSMSDYLWRQEDHPSAVTSLP
RTQESSADSQLTVSKNSARSDAVEHGIGKRDGVSNSVENYSGGVVRREDL
RDPRGSATWAISRETSVMTTEGEAHGLARIDLHGYSLELSGGSPIRKGNR
GRHWDPEGVSENAGGAHEPENGPRGENGDGEVRSTEDILSLFGGFGASNQ
PHPGKTVGASTLLGSRQSAANLAAEGHAIDGRLHELRREGNTPPSGGGDL
ATGMRREQQASQSTGWKDAGAAEAAGASKAALDWSCEMCGVRASPASTSC
RVCGTLAPGIGIEHKDDLGDGSVAVEQDA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR018838DUF2439
IPR001876Znf_RanBP2