prot_P-canaliculata_contig9446.23467.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-canaliculata_contig9446.23467.1
Unique Name	prot_P-canaliculata_contig9446.23467.1
Type	polypeptide
Organism	Pelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length	119

Homology

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BLAST of mRNA_P-canaliculata_contig9446.23467.1 vs. uniprot
Match: D8LNJ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNJ6_ECTSI)

HSP 1 Score: 177 bits (448), Expect = 5.990e-54
Identity = 84/106 (79.25%), Postives = 93/106 (87.74%), Query Frame = 0

Query:    1 QPCYGLYLLRIQCSELVSGIFIGCSIFTTLAAIGEAVQWGSESQLAEAIADEADLDVNSSGVVTFDALSILAWILFAFQLFAAYWCCKFRDVLLELSWSPDNDYSQ 106
            QPCYGLYLLRIQCSELVSGIFIGCS FTTL A+G+ VQWGSE+ LA AIADEAD DVNSSGV++F AL+ILAWILFA QLF  YWCCK RDVLLE+SWS  +DY+Q
Sbjct:   71 QPCYGLYLLRIQCSELVSGIFIGCSTFTTLGALGQGVQWGSETSLATAIADEADTDVNSSGVMSFKALAILAWILFAMQLFTTYWCCKARDVLLEVSWSAGHDYTQ 176

[Close]

BLAST of mRNA_P-canaliculata_contig9446.23467.1 vs. uniprot
Match: A0A6H5KYA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYA0_9PHAE)

HSP 1 Score: 172 bits (436), Expect = 6.000e-53
Identity = 82/105 (78.10%), Postives = 90/105 (85.71%), Query Frame = 0

Query:    2 PCYGLYLLRIQCSELVSGIFIGCSIFTTLAAIGEAVQWGSESQLAEAIADEADLDVNSSGVVTFDALSILAWILFAFQLFAAYWCCKFRDVLLELSWSPDNDYSQ 106
            PCYGLYLLRIQCSELVSGIFIGCS FTTL A  + VQWGSE+ LA AIADEAD DVNSSGV++F AL+ILAWILFA QLF  YWCCK RDVLLE+SWS  +DY+Q
Sbjct:   11 PCYGLYLLRIQCSELVSGIFIGCSTFTTLGAFAQGVQWGSETALATAIADEADTDVNSSGVISFKALAILAWILFAMQLFTTYWCCKARDVLLEVSWSAGHDYTQ 115

The following BLAST results are available for this feature:

BLAST of mRNA_P-canaliculata_contig9446.23467.1 vs. uniprot

BLAST of mRNA_P-canaliculata_contig9446.23467.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LNJ6_ECTSI	5.990e-54	79.25	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5KYA0_9PHAE	6.000e-53	78.10	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 88..118
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 16..34
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 67..87
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 35..66
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..15
None	No IPR available	TMHMM	TMhelix		coord: 13..35
None	No IPR available	TMHMM	TMhelix		coord: 62..84

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-canaliculata_contig9446	contig	P-canaliculata_contig9446:4786..6351 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Pelvetia canaliculata dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-canaliculata_contig9446.23467.1	mRNA_P-canaliculata_contig9446.23467.1	Pelvetia canaliculata dioecious	mRNA	P-canaliculata_contig9446 4786..8537 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-canaliculata_contig9446.23467.1 ID=prot_P-canaliculata_contig9446.23467.1|Name=mRNA_P-canaliculata_contig9446.23467.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=119bp
QPCYGLYLLRIQCSELVSGIFIGCSIFTTLAAIGEAVQWGSESQLAEAIA
DEADLDVNSSGVVTFDALSILAWILFAFQLFAAYWCCKFRDVLLELSWSP
DNDYSQRQLSVPGDILIF*