prot_P-canaliculata_contig9445.23466.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig9445.23466.1
Unique Nameprot_P-canaliculata_contig9445.23466.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length339
Homology
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BLAST of mRNA_P-canaliculata_contig9445.23466.1 vs. uniprot
Match: A0A6H5KL80_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL80_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 6.650e-28
Identity = 61/108 (56.48%), Postives = 73/108 (67.59%), Query Frame = 0 
Query:  230 ECFAFGPCERCEEPTLDAEYCKETGRRQEVRCTPRNAPDAFAIVRQEGQAGVVGLPSSIQYRSCEFTDEDELQGLLRFWISMVILGVVACFGMRKRQKKIKSLYDQRA 337
            EC A GPC  CE+  +  EYCKETGRR+EVRCT + A    A     G  GV  LPSS++YRSC + +EDE  GLL FWI MV +GV ACF +RKRQ+K  SLY +RA
Sbjct:  291 ECKAIGPCVWCEKDEVSLEYCKETGRREEVRCTVQGAAQNMAAGVAGGAVGV--LPSSVKYRSCPYAEEDEFLGLLHFWIFMVAVGVSACFCLRKRQQKGGSLYSRRA 396
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BLAST of mRNA_P-canaliculata_contig9445.23466.1 vs. uniprot
Match: D7G1T5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1T5_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 3.870e-21
Identity = 50/107 (46.73%), Postives = 63/107 (58.88%), Query Frame = 0 
Query:  230 ECFAFGPCERCEEPTLDAEYCKETGRRQEVRCTPRNAPDAFAIVRQEGQAGVVGLPSSIQYRSCEFTDEDELQGLLRFWISMVILGVVACFGMRKRQKKIKSLYDQR 336
            EC A GPC  CE+  ++ EYC+ETGRR+EVRCT + A    A     G  GV  LPSS++YRSC + +ED+  GL  FWI MV              KK+ SLYD+R
Sbjct:  140 ECKATGPCVWCEKDEVNLEYCRETGRREEVRCTVQGAEQNMAAGGAGGAVGV--LPSSVKYRSCAYAEEDDFLGLFHFWIVMVAXXXXXXXXXXXXXKKVGSLYDER 244
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9445.23466.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KL80_9PHAE6.650e-2856.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1T5_ECTSI3.870e-2146.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 323..338
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 303..322
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..302
NoneNo IPR availableTMHMMTMhelixcoord: 304..321

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig9445contigP-canaliculata_contig9445:1972..3920 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig9445.23466.1mRNA_P-canaliculata_contig9445.23466.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig9445 1913..5717 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig9445.23466.1 ID=prot_P-canaliculata_contig9445.23466.1|Name=mRNA_P-canaliculata_contig9445.23466.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=339bp
MSAMLSGNIPRTSSARARGLRKQRQKHVTRKPFARDKREEQNGNGGSSNG
ESRGDGGNGESGDVEVTGGAASPVAKTLNEAADAGAGSAAVENELGGVEH
GGVHDKTGEQPADEPESPAAGVVSEEETPSEADVEGKTVPKAMGKAALYA
PKRSRRSRAKQRREGAVRNHDHGSDVAGDSGSRSFKNDLPRSRSDDGSGR
PGGGAADEGAAAGAGALAEPTGLDGEENVECFAFGPCERCEEPTLDAEYC
KETGRRQEVRCTPRNAPDAFAIVRQEGQAGVVGLPSSIQYRSCEFTDEDE
LQGLLRFWISMVILGVVACFGMRKRQKKIKSLYDQRAM*
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