prot_P-canaliculata_contig94015.23413.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig94015.23413.1
Unique Nameprot_P-canaliculata_contig94015.23413.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length117
Homology
BLAST of mRNA_P-canaliculata_contig94015.23413.1 vs. uniprot
Match: A0A6G0WUZ6_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WUZ6_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 4.150e-20
Identity = 46/106 (43.40%), Postives = 68/106 (64.15%), Query Frame = 0
Query:   14 PIGFLSGKFNNSQLRWSTLDKEAWPIVFAIKKYNYLI-RNNKFQTIVHTDHKNLTYILNPAYEYISGNSFA-RVSRWSATIRNLPVSFRHIQGNRNIIADMLSRWG 117
            P+GFLSGKF  S+LRWST++KE + +V A K++NYL+ R+N F   ++TDH+NL YI     E       A +++RW+ T+ +      H+ G  N+  D+LSRWG
Sbjct: 1185 PLGFLSGKFKGSELRWSTIEKEGYAVVAACKRWNYLLLRHNGFH--LYTDHRNLQYIFGTEAELNVPRYLADKLARWAVTLASFTYKIHHVAGEDNVWGDLLSRWG 1288          
BLAST of mRNA_P-canaliculata_contig94015.23413.1 vs. uniprot
Match: A0A6A3INZ6_9STRA (Uncharacterized protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3INZ6_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.310e-17
Identity = 46/108 (42.59%), Postives = 66/108 (61.11%), Query Frame = 0
Query:   13 RPIGFLSGKFNNSQLRWSTLDKEAWPIVFAIKKYNYLI-RNNKFQTIVHTDHKNLTYILNPAYEYISGNSFA--RVSRWSATIRNLPVSFRHIQGNRNIIADMLSRWG 117
            RP+ FLSG+F  +QLRW T++KEA+ IV ++K+  YL+ R   F     TDH+NL YI NP+    S   +   ++ RW+  + +      HI+G+ N  ADMLSRWG
Sbjct:  316 RPLAFLSGRFTGAQLRWPTIEKEAYAIVESVKRLEYLLLRPGGFHLF--TDHRNLAYIFNPSATDGSMQRYQADKLQRWAMAMTSYRYVIEHIRGDDNAWADMLSRWG 421          
BLAST of mRNA_P-canaliculata_contig94015.23413.1 vs. uniprot
Match: A0A6H5JCX8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCX8_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 1.440e-17
Identity = 43/117 (36.75%), Postives = 61/117 (52.14%), Query Frame = 0
Query:    2 DNEFQEPVFPVRPIGFLSGKFNNSQLRWSTLDKEAWPIVFAIKKYNYLIRNNKFQTIVHTDHKNLTYILNP--AYEYISGNSFARVSRWSATIRNLPVSFRHIQGNRNIIADMLSRW 116
            DN          P+GFLSG F  SQLRW+T+DKE + I+   ++  YL+        +HTDH+NL YI +P      +   +  R+  W A +     + +HI G RN   D+LSRW
Sbjct:  220 DNNVPVEDMSHEPLGFLSGTFRGSQLRWATVDKEGFAIISTFRRLEYLLWGGVH---IHTDHRNLAYIFDPEACISTVPKTTAQRLENWKAVLGQYDYTIQHISGERNCWGDLLSRW 333          
BLAST of mRNA_P-canaliculata_contig94015.23413.1 vs. uniprot
Match: A0A6A3IIB7_9STRA (RNA-directed DNA polymerase n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3IIB7_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.450e-17
Identity = 46/108 (42.59%), Postives = 66/108 (61.11%), Query Frame = 0
Query:   13 RPIGFLSGKFNNSQLRWSTLDKEAWPIVFAIKKYNYLI-RNNKFQTIVHTDHKNLTYILNPAYEYISGNSFA--RVSRWSATIRNLPVSFRHIQGNRNIIADMLSRWG 117
            RP+ FLSG+F  +QLRW T++KEA+ IV ++K+  YL+ R   F     TDH+NL YI NP+    S   +   ++ RW+  + +      HI+G+ N  ADMLSRWG
Sbjct:  576 RPLAFLSGRFTGAQLRWPTIEKEAYAIVESVKRLEYLLLRPGGFHLF--TDHRNLAYIFNPSATDGSMQRYQADKLQRWAMAMTSYRYVIEHIRGDDNAWADMLSRWG 681          
BLAST of mRNA_P-canaliculata_contig94015.23413.1 vs. uniprot
Match: A0A6A4CIS0_9STRA (Integrase catalytic domain-containing protein n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4CIS0_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.470e-17
Identity = 46/108 (42.59%), Postives = 66/108 (61.11%), Query Frame = 0
Query:   13 RPIGFLSGKFNNSQLRWSTLDKEAWPIVFAIKKYNYLI-RNNKFQTIVHTDHKNLTYILNPAYEYISGNSFA--RVSRWSATIRNLPVSFRHIQGNRNIIADMLSRWG 117
            RP+ FLSG+F  +QLRW T++KEA+ IV ++K+  YL+ R   F     TDH+NL YI NP+    S   +   ++ RW+  + +      HI+G+ N  ADMLSRWG
Sbjct:  316 RPLAFLSGRFTGAQLRWPTIEKEAYAIVESVKRLEYLLLRPGGFHLF--TDHRNLAYIFNPSATDGSMQRYQADKLQRWAMAMTSYRYVIEHIRGDDNAWADMLSRWG 421          
BLAST of mRNA_P-canaliculata_contig94015.23413.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 1.510e-17
Identity = 43/117 (36.75%), Postives = 61/117 (52.14%), Query Frame = 0
Query:    2 DNEFQEPVFPVRPIGFLSGKFNNSQLRWSTLDKEAWPIVFAIKKYNYLIRNNKFQTIVHTDHKNLTYILNP--AYEYISGNSFARVSRWSATIRNLPVSFRHIQGNRNIIADMLSRW 116
            DN          P+GFLSG F  SQLRW+T+DKE + I+   ++  YL+        +HTDH+NL YI +P      +   +  R+  W A +     + +HI G RN   D+LSRW
Sbjct:  996 DNNVPVEDMSHEPLGFLSGTFRGSQLRWATVDKEGFAIISTFRRLEYLLWGGVH---IHTDHRNLAYIFDPEACISTVPKTTAQRLENWKAVLGQYDYTIQHISGERNCWGDLLSRW 1109          
BLAST of mRNA_P-canaliculata_contig94015.23413.1 vs. uniprot
Match: A0A0G4IHQ7_PLABS (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IHQ7_PLABS)

HSP 1 Score: 86.3 bits (212), Expect = 2.630e-17
Identity = 42/105 (40.00%), Postives = 62/105 (59.05%), Query Frame = 0
Query:   14 PIGFLSGKFNNSQLRWSTLDKEAWPIVFAIKKYNYLIRNNKFQTIVHTDHKNLTYILNPA-YEYISGNSFARVSRWSATIRNLPVSFRHIQGNRNIIADMLSRWG 117
            P+ F+SG F  SQL+W+T++KEA+ I+    +  + I  +K    + TDH+NL +ILNPA    IS  +  R+ RW   I +L     HI G  N+ AD+ +RWG
Sbjct:  481 PLSFISGTFRGSQLKWATIEKEAYAIIEGCYRLRHFISMSKLALRIFTDHRNLVFILNPASVARISRTTGDRLERWRLQIIDLDFHIEHIAGEDNVWADLATRWG 585          
BLAST of mRNA_P-canaliculata_contig94015.23413.1 vs. uniprot
Match: A0A6A4CL72_9STRA (Uncharacterized protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4CL72_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 1.310e-16
Identity = 44/111 (39.64%), Postives = 68/111 (61.26%), Query Frame = 0
Query:   13 RPIGFLSGKFNNSQLRWSTLDKEAWPIVFAIKKYNYLI-RNNKFQTIVHTDHKNLTYILNPAYEYISGNSFAR-----VSRWSATIRNLPVSFRHIQGNRNIIADMLSRWG 117
            RP+ FLSG+F  ++ RWST++KEA+ IV A ++  YL+ R   F+  ++TDH+NL YI NP   Y +  + AR     + RW+ ++ +      H+ G  N+  D+LSRWG
Sbjct:  422 RPLAFLSGRFVGAESRWSTIEKEAYAIVEATRRLEYLLLRPRGFR--LYTDHRNLVYIFNP---YATDGTMARYQADKLQRWALSLMSFQYIIEHVPGEVNVWGDLLSRWG 527          
BLAST of mRNA_P-canaliculata_contig94015.23413.1 vs. uniprot
Match: A0A6A4Z8T2_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4Z8T2_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 1.340e-16
Identity = 41/106 (38.68%), Postives = 64/106 (60.38%), Query Frame = 0
Query:   13 RPIGFLSGKFNNSQLRWSTLDKEAWPIVFAIKKYNYLIRNNKFQTIVHTDHKNLTYILNPAYEYISGNSFA-RVSRWSATIRNLPVSFRHIQGNRNIIADMLSRWG 117
            RP+ F+SG F+ +QLRWS  +KEA+ I++A+K+ +YL+   +  TI+ TDH+NL +I             A +++RW+  +       RH+ G+ N   DMLSRWG
Sbjct: 1138 RPLAFVSGAFDKTQLRWSVTEKEAYAIIYAVKRLDYLLHRARGFTIL-TDHRNLAFIFGVEPSPDQPRYLADKLARWAVALTCFRYDIRHVPGDENAWGDMLSRWG 1242          
BLAST of mRNA_P-canaliculata_contig94015.23413.1 vs. uniprot
Match: A0A2P4WZY3_9STRA (RNA-directed DNA polymerase n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4WZY3_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 2.480e-16
Identity = 43/108 (39.81%), Postives = 67/108 (62.04%), Query Frame = 0
Query:   13 RPIGFLSGKFNNSQLRWSTLDKEAWPIVFAIKKYNYLI-RNNKFQTIVHTDHKNLTYILNPAYEYISGNSFA--RVSRWSATIRNLPVSFRHIQGNRNIIADMLSRWG 117
            RP+ FLSG+F  +QLRW T++KEA+ IV + K+  YL+ R   F  +  TDH+NL Y+ +P     +   +   ++ RW+ T+ +      H++G+ N+ ADMLSRWG
Sbjct:  993 RPLAFLSGRFTGAQLRWPTIEKEAFAIVESAKRLEYLLLRPGGFHLL--TDHRNLVYMFSPTAIDGAMQRYQADKLQRWAMTMTSYRYVIEHVRGSDNVWADMLSRWG 1098          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig94015.23413.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6G0WUZ6_9STRA4.150e-2043.40Uncharacterized protein n=3 Tax=Aphanomyces euteic... [more]
A0A6A3INZ6_9STRA1.310e-1742.59Uncharacterized protein n=1 Tax=Phytophthora rubi ... [more]
A0A6H5JCX8_9PHAE1.440e-1736.75Integrase catalytic domain-containing protein n=1 ... [more]
A0A6A3IIB7_9STRA1.450e-1742.59RNA-directed DNA polymerase n=2 Tax=Phytophthora r... [more]
A0A6A4CIS0_9STRA1.470e-1742.59Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5L7F6_9PHAE1.510e-1736.75Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A0G4IHQ7_PLABS2.630e-1740.00Reverse transcriptase domain-containing protein (F... [more]
A0A6A4CL72_9STRA1.310e-1639.64Uncharacterized protein n=1 Tax=Phytophthora rubi ... [more]
A0A6A4Z8T2_9STRA1.340e-1638.68Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A2P4WZY3_9STRA2.480e-1639.81RNA-directed DNA polymerase n=1 Tax=Phytophthora p... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR041373Reverse transcriptase, RNase H-like domainPFAMPF17917RT_RNaseHcoord: 12..92
e-value: 1.1E-16
score: 61.0
NoneNo IPR availableGENE3D3.30.70.270coord: 103..115
e-value: 5.8E-19
score: 70.6
NoneNo IPR availableGENE3D3.10.20.370coord: 11..102
e-value: 5.8E-19
score: 70.6
NoneNo IPR availablePANTHERPTHR47266FAMILY NOT NAMEDcoord: 14..115
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 12..101

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig94015contigP-canaliculata_contig94015:389..739 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig94015.23413.1mRNA_P-canaliculata_contig94015.23413.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig94015 389..739 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig94015.23413.1 ID=prot_P-canaliculata_contig94015.23413.1|Name=mRNA_P-canaliculata_contig94015.23413.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=117bp
YDNEFQEPVFPVRPIGFLSGKFNNSQLRWSTLDKEAWPIVFAIKKYNYLI
RNNKFQTIVHTDHKNLTYILNPAYEYISGNSFARVSRWSATIRNLPVSFR
HIQGNRNIIADMLSRWG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR041373RT_RNaseH