prot_P-canaliculata_contig9399.23410.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig9399.23410.1
Unique Nameprot_P-canaliculata_contig9399.23410.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length169
Homology
BLAST of mRNA_P-canaliculata_contig9399.23410.1 vs. uniprot
Match: D8LN05_ECTSI (PHD-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN05_ECTSI)

HSP 1 Score: 241 bits (615), Expect = 2.410e-72
Identity = 135/164 (82.32%), Postives = 137/164 (83.54%), Query Frame = 0
Query:    1 LVNELGGVSKVAEMTGRKGRMVKK-DGEVLYEKRNLNGISMTMQARRGXXXXXXXXTRRNASDNVFEKECFMSGQKLVAIISEAASAGISLQADRRVKNQRPRVHITMELPWSADKAVQQLGRSHRSNQSSAPSYKLLLSSVGGERRFASTVSRRLESLGALTQ 163
            LVNELGG   VAEMTGRKGRMVKK DGEV+YEKRN NGISMTMQ                   NVFEKECFMSGQKLVAIISEAASAGISLQADRR KNQ+PRVHITMELPWSADKAVQQLGRSHRSNQSSAPSYKLLLSSVGGERRFAS VS RLESLGALTQ
Sbjct:  122 LVNELGGAGVVAEMTGRKGRMVKKPDGEVVYEKRNANGISMTMQ-------------------NVFEKECFMSGQKLVAIISEAASAGISLQADRRAKNQKPRVHITMELPWSADKAVQQLGRSHRSNQSSAPSYKLLLSSVGGERRFASAVSSRLESLGALTQ 266          
BLAST of mRNA_P-canaliculata_contig9399.23410.1 vs. uniprot
Match: A0A8J2S7U1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S7U1_9STRA)

HSP 1 Score: 196 bits (498), Expect = 5.180e-55
Identity = 110/165 (66.67%), Postives = 125/165 (75.76%), Query Frame = 0
Query:    1 LVNELGGVSKVAEMTGRKGRMVKK--DGEVLYEKRNLNGISMTMQARRGXXXXXXXXTRRNASDNVFEKECFMSGQKLVAIISEAASAGISLQADRRVKNQRPRVHITMELPWSADKAVQQLGRSHRSNQSSAPSYKLLLSSVGGERRFASTVSRRLESLGALTQ 163
            L+ ELGG   VAEMTGRKGRMV+    G+V+YE RN NG+S+ MQ                   N+ EK+ F  G+K VAIISEAASAGISLQADRRV NQR RVHIT+ELPWSADKA+QQLGR+HRSNQSSAP YK L+SSVGGE+RFAS V+RRLESLGALTQ
Sbjct:  722 LIAELGGSDCVAEMTGRKGRMVRDATSGKVVYEARNSNGVSLEMQ-------------------NMHEKQAFNGGEKHVAIISEAASAGISLQADRRVANQRRRVHITLELPWSADKAIQQLGRTHRSNQSSAPEYKFLISSVGGEKRFASAVARRLESLGALTQ 867          
BLAST of mRNA_P-canaliculata_contig9399.23410.1 vs. uniprot
Match: A0A7S4A0M8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A0M8_9STRA)

HSP 1 Score: 196 bits (498), Expect = 6.170e-55
Identity = 110/165 (66.67%), Postives = 125/165 (75.76%), Query Frame = 0
Query:    1 LVNELGGVSKVAEMTGRKGRMVKK--DGEVLYEKRNLNGISMTMQARRGXXXXXXXXTRRNASDNVFEKECFMSGQKLVAIISEAASAGISLQADRRVKNQRPRVHITMELPWSADKAVQQLGRSHRSNQSSAPSYKLLLSSVGGERRFASTVSRRLESLGALTQ 163
            L+ ELGG   VAEMTGRKGRMV+    G+V+YE RN NG+S+ MQ                   N+ EK+ F  G+K VAIISEAASAGISLQADRRV NQR RVHIT+ELPWSADKA+QQLGR+HRSNQSSAP YK L+SSVGGE+RFAS V+RRLESLGALTQ
Sbjct:  722 LIAELGGSDCVAEMTGRKGRMVRDATSGKVVYEARNSNGVSLEMQ-------------------NMHEKQAFNGGEKHVAIISEAASAGISLQADRRVANQRRRVHITLELPWSADKAIQQLGRTHRSNQSSAPEYKFLISSVGGEKRFASAVARRLESLGALTQ 867          
BLAST of mRNA_P-canaliculata_contig9399.23410.1 vs. uniprot
Match: A0A7S3JZA5_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JZA5_9STRA)

HSP 1 Score: 192 bits (488), Expect = 1.380e-53
Identity = 110/166 (66.27%), Postives = 124/166 (74.70%), Query Frame = 0
Query:    1 LVNELGGVSKVAEMTGRKGRMVK--KDGEVLYEKRN-LNGISMTMQARRGXXXXXXXXTRRNASDNVFEKECFMSGQKLVAIISEAASAGISLQADRRVKNQRPRVHITMELPWSADKAVQQLGRSHRSNQSSAPSYKLLLSSVGGERRFASTVSRRLESLGALTQ 163
            L++ LGG   VAEMTGRK RMV+  K G+V  E RN  NG+S+ MQ                   N+ EK CF +G+K VAIISEAASAGISLQADRRV NQ+ RVHIT+ELPWSADKA+QQLGRSHRSNQSSAP YK L+SSVGGERRFAS V+RRLESLGALTQ
Sbjct:  819 LIDALGGSENVAEMTGRKNRMVRDPKTGKVRQEVRNEKNGVSLEMQ-------------------NMHEKRCFQNGEKCVAIISEAASAGISLQADRRVPNQKRRVHITLELPWSADKAIQQLGRSHRSNQSSAPEYKFLISSVGGERRFASAVARRLESLGALTQ 965          
BLAST of mRNA_P-canaliculata_contig9399.23410.1 vs. uniprot
Match: A0A2G3BC98_CAPCH (Protein strawberry notch-like protein 1 n=1 Tax=Capsicum chinense TaxID=80379 RepID=A0A2G3BC98_CAPCH)

HSP 1 Score: 172 bits (437), Expect = 1.010e-49
Identity = 96/162 (59.26%), Postives = 117/162 (72.22%), Query Frame = 0
Query:    4 ELGGVSKVAEMTGRKGRMVKK-DGE-VLYEKRNLNGISMTMQARRGXXXXXXXXTRRNASDNVFEKECFMSGQKLVAIISEAASAGISLQADRRVKNQRPRVHITMELPWSADKAVQQLGRSHRSNQSSAPSYKLLLSSVGGERRFASTVSRRLESLGALTQ 163
            ELGG   VAE+TGRKG +V+   G+ V Y+ RN   +SM M                    N+ EK+ FM G+KLVAIISEA SAG+SLQADRR  NQR RVH+T+ELPWSAD+A+QQ GR+HRSNQ+SAP YKLL +++GGERRFAS V++RLESLGALTQ
Sbjct:   45 ELGGPENVAEITGRKGMLVRAASGKGVTYQARNTKDVSMEMV-------------------NIHEKQLFMEGKKLVAIISEAGSAGVSLQADRRALNQRRRVHVTLELPWSADRAIQQFGRTHRSNQASAPEYKLLFTNLGGERRFASVVAKRLESLGALTQ 187          
BLAST of mRNA_P-canaliculata_contig9399.23410.1 vs. uniprot
Match: A0A1S3YUK0_TOBAC (protein strawberry notch-like isoform X4 n=1 Tax=Nicotiana tabacum TaxID=4097 RepID=A0A1S3YUK0_TOBAC)

HSP 1 Score: 178 bits (452), Expect = 1.190e-49
Identity = 96/165 (58.18%), Postives = 120/165 (72.73%), Query Frame = 0
Query:    1 LVNELGGVSKVAEMTGRKGRMVKKDGE--VLYEKRNLNGISMTMQARRGXXXXXXXXTRRNASDNVFEKECFMSGQKLVAIISEAASAGISLQADRRVKNQRPRVHITMELPWSADKAVQQLGRSHRSNQSSAPSYKLLLSSVGGERRFASTVSRRLESLGALTQ 163
            ++++LGG  KVAE+TGRKG +V+  G   V Y+ RN   +SM M                    N+ EK+ FM G+KLVAIISEA SAG+SLQADRR  NQR RVH+T+ELPWSAD+A+QQ GR+HRSNQ+SAP YKLL +++GGERRFAS V++RLESLGALTQ
Sbjct:  284 IIDQLGGPEKVAEITGRKGMLVRASGGKGVTYQARNTKDVSMEMV-------------------NIHEKQLFMDGKKLVAIISEAGSAGVSLQADRRALNQRRRVHLTLELPWSADRAIQQFGRTHRSNQASAPEYKLLFTNLGGERRFASVVAKRLESLGALTQ 429          
BLAST of mRNA_P-canaliculata_contig9399.23410.1 vs. uniprot
Match: A0A8B7NXI7_HYAAZ (protein strawberry notch homolog 1-like isoform X1 n=6 Tax=Hyalella azteca TaxID=294128 RepID=A0A8B7NXI7_HYAAZ)

HSP 1 Score: 180 bits (456), Expect = 2.780e-49
Identity = 96/162 (59.26%), Postives = 120/162 (74.07%), Query Frame = 0
Query:    1 LVNELGGVSKVAEMTGRKGRMVKKDGEVLYEKRNLNGISMTMQARRGXXXXXXXXTRRNASDNVFEKECFMSGQKLVAIISEAASAGISLQADRRVKNQRPRVHITMELPWSADKAVQQLGRSHRSNQSSAPSYKLLLSSVGGERRFASTVSRRLESLGALT 162
            L++ELGG  KVAEMTGRKGR+V+ DG V+YE R+   + + +                    N+ EKE FM+G+KL+AIISEAAS+GISLQ+DRRVKNQR RVHIT+ELPWSAD+A+QQ GR+HRSNQ + P Y  L+S + GERRFAS V++RLESLGALT
Sbjct:  901 LIDELGGPEKVAEMTGRKGRVVQTDGNVVYESRSEQDVPLEIL-------------------NIKEKERFMNGEKLIAIISEAASSGISLQSDRRVKNQRRRVHITLELPWSADRAIQQFGRTHRSNQVNGPEYVFLISELAGERRFASIVAKRLESLGALT 1043          
BLAST of mRNA_P-canaliculata_contig9399.23410.1 vs. uniprot
Match: UPI00077B237B (LOW QUALITY PROTEIN: protein strawberry notch homolog 1-like n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077B237B)

HSP 1 Score: 169 bits (428), Expect = 3.200e-49
Identity = 93/163 (57.06%), Postives = 115/163 (70.55%), Query Frame = 0
Query:    1 LVNELGGVSKVAEMTGRKGRMVK-KDGEVLYEKRNLNGISMTMQARRGXXXXXXXXTRRNASDNVFEKECFMSGQKLVAIISEAASAGISLQADRRVKNQRPRVHITMELPWSADKAVQQLGRSHRSNQSSAPSYKLLLSSVGGERRFASTVSRRLESLGALT 162
            L+++LGG   VAEMTGRK R+V  +DG + YE R+   + + +                    N+ EK+ FM G+K VA+ISEAAS+G+SLQADRR KNQR RVHIT+ELPWSADKA+QQ GRSHRSNQ SAP Y  L+S + GERRFAS V++RLESLGALT
Sbjct:   24 LIHDLGGPDNVAEMTGRKNRVVSNEDGTISYESRSKQDVPLELL-------------------NIAEKKRFMDGEKNVAVISEAASSGVSLQADRRAKNQRRRVHITLELPWSADKAIQQFGRSHRSNQVSAPEYLFLISELAGERRFASIVAKRLESLGALT 167          
BLAST of mRNA_P-canaliculata_contig9399.23410.1 vs. uniprot
Match: A0A1S3YTW0_TOBAC (protein strawberry notch-like isoform X1 n=3 Tax=Nicotiana tabacum TaxID=4097 RepID=A0A1S3YTW0_TOBAC)

HSP 1 Score: 178 bits (452), Expect = 5.040e-49
Identity = 96/165 (58.18%), Postives = 120/165 (72.73%), Query Frame = 0
Query:    1 LVNELGGVSKVAEMTGRKGRMVKKDGE--VLYEKRNLNGISMTMQARRGXXXXXXXXTRRNASDNVFEKECFMSGQKLVAIISEAASAGISLQADRRVKNQRPRVHITMELPWSADKAVQQLGRSHRSNQSSAPSYKLLLSSVGGERRFASTVSRRLESLGALTQ 163
            ++++LGG  KVAE+TGRKG +V+  G   V Y+ RN   +SM M                    N+ EK+ FM G+KLVAIISEA SAG+SLQADRR  NQR RVH+T+ELPWSAD+A+QQ GR+HRSNQ+SAP YKLL +++GGERRFAS V++RLESLGALTQ
Sbjct:  284 IIDQLGGPEKVAEITGRKGMLVRASGGKGVTYQARNTKDVSMEMV-------------------NIHEKQLFMDGKKLVAIISEAGSAGVSLQADRRALNQRRRVHLTLELPWSADRAIQQFGRTHRSNQASAPEYKLLFTNLGGERRFASVVAKRLESLGALTQ 429          
BLAST of mRNA_P-canaliculata_contig9399.23410.1 vs. uniprot
Match: A0A1S4C681_TOBAC (protein strawberry notch n=6 Tax=Nicotiana TaxID=4085 RepID=A0A1S4C681_TOBAC)

HSP 1 Score: 178 bits (452), Expect = 8.650e-49
Identity = 96/165 (58.18%), Postives = 120/165 (72.73%), Query Frame = 0
Query:    1 LVNELGGVSKVAEMTGRKGRMVKKDGE--VLYEKRNLNGISMTMQARRGXXXXXXXXTRRNASDNVFEKECFMSGQKLVAIISEAASAGISLQADRRVKNQRPRVHITMELPWSADKAVQQLGRSHRSNQSSAPSYKLLLSSVGGERRFASTVSRRLESLGALTQ 163
            ++++LGG  KVAE+TGRKG +V+  G   V Y+ RN   +SM M                    N+ EK+ FM G+KLVAIISEA SAG+SLQADRR  NQR RVH+T+ELPWSAD+A+QQ GR+HRSNQ+SAP YKLL +++GGERRFAS V++RLESLGALTQ
Sbjct:  510 IIDQLGGPEKVAEITGRKGMLVRASGGKGVTYQARNTKDVSMEMV-------------------NIHEKQLFMDGKKLVAIISEAGSAGVSLQADRRALNQRRRVHLTLELPWSADRAIQQFGRTHRSNQASAPEYKLLFTNLGGERRFASVVAKRLESLGALTQ 655          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9399.23410.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LN05_ECTSI2.410e-7282.32PHD-type domain-containing protein (Fragment) n=1 ... [more]
A0A8J2S7U1_9STRA5.180e-5566.67Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S4A0M8_9STRA6.170e-5566.67Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3JZA5_9STRA1.380e-5366.27Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A2G3BC98_CAPCH1.010e-4959.26Protein strawberry notch-like protein 1 n=1 Tax=Ca... [more]
A0A1S3YUK0_TOBAC1.190e-4958.18protein strawberry notch-like isoform X4 n=1 Tax=N... [more]
A0A8B7NXI7_HYAAZ2.780e-4959.26protein strawberry notch homolog 1-like isoform X1... [more]
UPI00077B237B3.200e-4957.06LOW QUALITY PROTEIN: protein strawberry notch homo... [more]
A0A1S3YTW0_TOBAC5.040e-4958.18protein strawberry notch-like isoform X1 n=3 Tax=N... [more]
A0A1S4C681_TOBAC8.650e-4958.18protein strawberry notch n=6 Tax=Nicotiana TaxID=4... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026937Strawberry notch, helicase C domainPFAMPF13871Helicase_C_4coord: 1..163
e-value: 2.2E-64
score: 217.8
NoneNo IPR availablePANTHERPTHR12706:SF30coord: 1..163
IPR026741Protein strawberry notchPANTHERPTHR12706STRAWBERRY NOTCH-RELATEDcoord: 1..163
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 69..161

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig9399contigP-canaliculata_contig9399:9654..10918 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig9399.23410.1mRNA_P-canaliculata_contig9399.23410.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig9399 9654..10918 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig9399.23410.1 ID=prot_P-canaliculata_contig9399.23410.1|Name=mRNA_P-canaliculata_contig9399.23410.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=169bp
LVNELGGVSKVAEMTGRKGRMVKKDGEVLYEKRNLNGISMTMQARRGGGG
GRKRRTRRNASDNVFEKECFMSGQKLVAIISEAASAGISLQADRRVKNQR
PRVHITMELPWSADKAVQQLGRSHRSNQSSAPSYKLLLSSVGGERRFAST
VSRRLESLGALTQVRGIR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR026937SBNO_Helicase_C_dom
IPR026741SNO
IPR027417P-loop_NTPase