prot_P-canaliculata_contig9393.23406.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-canaliculata_contig9393.23406.1
Unique Name	prot_P-canaliculata_contig9393.23406.1
Type	polypeptide
Organism	Pelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length	355

Homology

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BLAST of mRNA_P-canaliculata_contig9393.23406.1 vs. uniprot
Match: A0A6H5JET1_9PHAE (SAM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET1_9PHAE)

HSP 1 Score: 254 bits (650), Expect = 5.980e-74
Identity = 129/161 (80.12%), Postives = 148/161 (91.93%), Query Frame = 0

Query:    1 MQRLSISSLDDSGATGQSLGQASRQRERAGTPVGSPADLAEFLGDMELGQYARVLMDNEIDLEAVQLMADSDFQDIGIPKGPRVKMLYALRTNRHPPKSGGLSVMRTFLTSLGLERYCKAFEDAEVDLSAVDVMEESDYAELGVAKGPRLKMMNVLAKAAG 161
            M RLSI+S DDS + G+S+GQASRQRER GTPVG+PADLAEFLGDM LGQYA+ L +NEIDLEAVQLMADSDFQDIGIPKGPRVK+LYALRTNR+PPKSG +S M+TFL SLGL+RYCKAFE+AEVD+ AV+VMEESDYA+LGVAKGPRLK+MNVLA++ G
Sbjct:  546 MNRLSINS-DDSNSGGRSIGQASRQRERPGTPVGNPADLAEFLGDMGLGQYAQALTENEIDLEAVQLMADSDFQDIGIPKGPRVKLLYALRTNRYPPKSGDMSTMKTFLASLGLDRYCKAFEEAEVDMGAVEVMEESDYAQLGVAKGPRLKLMNVLARSVG 705

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BLAST of mRNA_P-canaliculata_contig9393.23406.1 vs. uniprot
Match: D7FHT5_ECTSI (SAM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHT5_ECTSI)

HSP 1 Score: 234 bits (598), Expect = 5.460e-68
Identity = 120/146 (82.19%), Postives = 133/146 (91.10%), Query Frame = 0

Query:    1 MQRLSISSLDDSGATGQSLGQASRQRERAGTPVGSPADLAEFLGDMELGQYARVLMDNEIDLEAVQLMADSDFQDIGIPKGPRVKMLYALRTNRHPPKSGGLSVMRTFLTSLGLERYCKAFEDAEVDLSAVDVMEESDYAELGVAK 146
            M RLSI+S DDS   G+S+GQASRQRER GTPVG+PADLAEFLGDM LGQYA+ L +NEIDLEAVQLMADSDFQDIGIPKGPRVK+LYALRTNR+PPKSG LS M+TFL SLGL+RYCKAFE+AEVD+ AVDVMEESDYA+LGVAK
Sbjct:  406 MNRLSINS-DDSNGGGRSIGQASRQRERPGTPVGNPADLAEFLGDMGLGQYAQALTENEIDLEAVQLMADSDFQDIGIPKGPRVKLLYALRTNRYPPKSGDLSTMKTFLASLGLDRYCKAFEEAEVDMGAVDVMEESDYAQLGVAK 550

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BLAST of mRNA_P-canaliculata_contig9393.23406.1 vs. uniprot
Match: A0A836CJQ9_9STRA (SAM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJQ9_9STRA)

HSP 1 Score: 116 bits (291), Expect = 6.760e-25
Identity = 66/135 (48.89%), Postives = 88/135 (65.19%), Query Frame = 0

Query:   38 DLAEFLGDMELGQYARVLMDNEIDLEAVQLMADSDFQDIGIPKGPRVKMLYALRTNRHPPKSGGLSVMRTFLTSLGLERYCKAFEDAEVDLSAVDVMEESDYAELGVAKGPRLKMMNVLAKAAGSLNSGSVGAAS 172
            D  E +G   LG YA V  +NEIDLEA++LM   DF +IGIPKGP  K+ YALR  R PP +      R FL+++G+ +Y  +FE+A+VD++A+  M E D+AELGV KGPRLK+M  L +       GSV +AS
Sbjct:  728 DYLEAVGS-GLGHYASVFKENEIDLEAMRLMGARDFVEIGIPKGPAAKIAYALREGRAPPGATLPLSTRQFLSAMGMSKYQSSFEEAKVDIAAMAAMREQDFAELGVVKGPRLKIMAELQRMFPEHRMGSVESAS 861

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BLAST of mRNA_P-canaliculata_contig9393.23406.1 vs. uniprot
Match: A0A835YRS0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRS0_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 5.790e-16
Identity = 58/141 (41.13%), Postives = 69/141 (48.94%), Query Frame = 0

Query:   57 DNEIDLEAVQLMADSDFQDIGIPKGPRVKMLYALRTNRHPPKSGGLSVMRTFLTSLGL-----------------------------ERYCKAFEDAEVDLSAVDVMEESDYAELGVA---------------KGPRLKMM 153
            +NEID+EA++LM  +DF +IGIPKGP VK+ Y LR NR PP  G     R FLTSLGL                              +Y  AFEDA VDL A+  M E D  +LGV                KGPRLK+M
Sbjct:  790 ENEIDIEAMRLMGATDFVEIGIPKGPAVKIAYTLRENRPPPGGGSPLTARQFLTSLGLVKALGAQGRSAXXXXXXXXXXXXXTSLGLAKYAAAFEDALVDLPALAAMREQDLVDLGVVTVEAISSDXXXXXVVKGPRLKIM 930

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BLAST of mRNA_P-canaliculata_contig9393.23406.1 vs. uniprot
Match: A0A835YT56_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT56_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 1.090e-8
Identity = 31/55 (56.36%), Postives = 45/55 (81.82%), Query Frame = 0

Query:   37 ADLAEFLGDMELGQYARVLMDNEIDLEAVQLMADSDFQDIGIPKGPRVKMLYALR 91
            A LAE L  ++L +YAR L +NE+DL+A+QLM+++DF D+GIPKGPR+K++ A R
Sbjct:  393 ASLAELLCALKLTKYARPLEENEVDLDALQLMSEADFTDLGIPKGPRLKIMNAAR 447

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BLAST of mRNA_P-canaliculata_contig9393.23406.1 vs. uniprot
Match: A0A382VC15_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382VC15_9ZZZZ)

HSP 1 Score: 57.0 bits (136), Expect = 4.560e-6
Identity = 26/62 (41.94%), Postives = 44/62 (70.97%), Query Frame = 0

Query:   38 DLAEFLGDMELGQYARVLMDNEIDLEAVQLMADSDFQDIGIPKGPRVKMLYALRTNRHPPKS 99
            D+ ++L ++ L +YA V  +NEIDL+AV L+++ DF+++G+P GPR K+L A+   + P  S
Sbjct:    4 DIEQWLDNLGLSKYADVFAENEIDLDAVGLLSEEDFKELGLPMGPRRKLLAAVDGIQSPTVS 65

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BLAST of mRNA_P-canaliculata_contig9393.23406.1 vs. uniprot
Match: D7FQB1_ECTSI (SAM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQB1_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 5.620e-6
Identity = 29/54 (53.70%), Postives = 39/54 (72.22%), Query Frame = 0

Query:   37 ADLAEFLGDMELGQYARVLMDNEIDLEAVQLMADSDFQDIGIPKGPRVKMLYAL 90
            A L + L  M LG+Y     +NE+DLEA+ LM++SD  DIGIPKGPR+K+L A+
Sbjct:  570 ARLGKVLQTMGLGKYCPKFAENEVDLEALGLMSESDLADIGIPKGPRLKILNAV 623

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BLAST of mRNA_P-canaliculata_contig9393.23406.1 vs. uniprot
Match: A0A5N5F7E1_9ROSA (SAM domain-containing protein n=2 Tax=Pyrus TaxID=3766 RepID=A0A5N5F7E1_9ROSA)

HSP 1 Score: 57.8 bits (138), Expect = 9.200e-6
Identity = 30/73 (41.10%), Postives = 44/73 (60.27%), Query Frame = 0

Query:   27 ERAGTPVGSPADLAEFLGDMELGQYARVLMDNEIDLEAVQLMADSDFQDIGIPKGPRVKMLYAL--RTNRHPP 97
            +R+   V     +AE L  + LG+YA +    E+D+ A++ M D D +++GIP GPR K+L AL  RT R PP
Sbjct:  236 QRSSQMVDDTRTVAELLHRLGLGKYAIIFQAEEVDMTALKQMGDKDLKELGIPMGPRKKILLALLPRTKRPPP 308

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BLAST of mRNA_P-canaliculata_contig9393.23406.1 vs. uniprot
Match: A0A813JZV9_POLGL (Hypothetical protein (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813JZV9_POLGL)

HSP 1 Score: 53.9 bits (128), Expect = 1.830e-5
Identity = 23/52 (44.23%), Postives = 35/52 (67.31%), Query Frame = 0

Query:  105 MRTFLTSLGLERYCKAFEDAEVDLSAVDVMEESDYAELGVAKGPRLKMMNVL 156
            M T +  +GLER+  AF+  EVDL A+ + EE D  +LG+ KGPR+K++  +
Sbjct:    1 METLMQQIGLERFIPAFQAEEVDLDALSLFEEKDLQDLGLPKGPRVKLLRAV 52

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BLAST of mRNA_P-canaliculata_contig9393.23406.1 vs. uniprot
Match: A0A087YED5_POEFO (DDHD domain containing 2 n=27 Tax=Poeciliinae TaxID=586240 RepID=A0A087YED5_POEFO)

HSP 1 Score: 57.4 bits (137), Expect = 2.520e-5
Identity = 30/81 (37.04%), Postives = 47/81 (58.02%), Query Frame = 0

Query:   21 QASRQRERAGTPVGSPA-----DLAEFLGDMELGQYARVLMDNEIDLEAVQLMADSDFQDIGIPKGPRVKMLYALRTNRHP 96
            Q +R R R G P G  +      L + L  ++L QY + L+   +D+E++ L  DSD +++GIP GPR K+L+ +R  R P
Sbjct:  411 QRNRSRAREGVPSGEHSALNSDTLEQMLTKLDLQQYLQTLLAENVDMESLALCQDSDLRNLGIPLGPRKKILHYIRKKRLP 491

The following BLAST results are available for this feature:

BLAST of mRNA_P-canaliculata_contig9393.23406.1 vs. uniprot

BLAST of mRNA_P-canaliculata_contig9393.23406.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 24


Match Name	E-value	Identity	Description
A0A6H5JET1_9PHAE	5.980e-74	80.12	SAM domain-containing protein n=1 Tax=Ectocarpus s...	[more]
D7FHT5_ECTSI	5.460e-68	82.19	SAM domain-containing protein n=1 Tax=Ectocarpus s...	[more]
A0A836CJQ9_9STRA	6.760e-25	48.89	SAM domain-containing protein n=1 Tax=Tribonema mi...	[more]
A0A835YRS0_9STRA	5.790e-16	41.13	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835YT56_9STRA	1.090e-8	56.36	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A382VC15_9ZZZZ	4.560e-6	41.94	Uncharacterized protein (Fragment) n=1 Tax=marine ...	[more]
D7FQB1_ECTSI	5.620e-6	53.70	SAM domain-containing protein n=2 Tax=Ectocarpus T...	[more]
A0A5N5F7E1_9ROSA	9.200e-6	41.10	SAM domain-containing protein n=2 Tax=Pyrus TaxID=...	[more]
A0A813JZV9_POLGL	1.830e-5	44.23	Hypothetical protein (Fragment) n=1 Tax=Polarella ...	[more]
A0A087YED5_POEFO	2.520e-5	37.04	DDHD domain containing 2 n=27 Tax=Poeciliinae TaxI...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001660	Sterile alpha motif domain	SMART	SM00454	SAM_4	coord: 97..162 e-value: 1.9E-4 score: 30.8 coord: 31..96 e-value: 8.0E-7 score: 38.7
IPR001660	Sterile alpha motif domain	PFAM	PF00536	SAM_1	coord: 107..156 e-value: 3.3E-9 score: 37.1 coord: 35..92 e-value: 7.1E-11 score: 42.4
IPR013761	Sterile alpha motif/pointed domain superfamily	GENE3D	1.10.150.50		coord: 37..99 e-value: 2.3E-14 score: 54.9 coord: 103..167 e-value: 7.6E-13 score: 50.0
IPR013761	Sterile alpha motif/pointed domain superfamily	SUPERFAMILY	47769	SAM/Pointed domain	coord: 33..95
IPR013761	Sterile alpha motif/pointed domain superfamily	SUPERFAMILY	47769	SAM/Pointed domain	coord: 107..158
None	No IPR available	PANTHER	PTHR24161:SF43	LD20463P	coord: 12..96
None	No IPR available	PANTHER	PTHR24161	FAMILY NOT NAMED	coord: 104..158
None	No IPR available	PANTHER	PTHR24161:SF43	LD20463P	coord: 104..158
None	No IPR available	PANTHER	PTHR24161	FAMILY NOT NAMED	coord: 12..96

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-canaliculata_contig9393	contig	P-canaliculata_contig9393:4836..7877 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Pelvetia canaliculata dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-canaliculata_contig9393.23406.1	mRNA_P-canaliculata_contig9393.23406.1	Pelvetia canaliculata dioecious	mRNA	P-canaliculata_contig9393 3464..7986 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-canaliculata_contig9393.23406.1 ID=prot_P-canaliculata_contig9393.23406.1|Name=mRNA_P-canaliculata_contig9393.23406.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=355bp
MQRLSISSLDDSGATGQSLGQASRQRERAGTPVGSPADLAEFLGDMELGQ
YARVLMDNEIDLEAVQLMADSDFQDIGIPKGPRVKMLYALRTNRHPPKSG
GLSVMRTFLTSLGLERYCKAFEDAEVDLSAVDVMEESDYAELGVAKGPRL
KMMNVLAKAAGSLNSGSVGAASTGSNTGSAFSVSPERRHSPPPPPQAQPR
ATSQVPASTSLPAGAVSATYSPLCAARSSSSSTGSSDSPRSRATATPERS
SEEGTFSSSSSTSTVSVGSVAEAASANKASAAADGREEIGGQRLPPSWDD
HAVIKAERPTTSSSVVGVPSVEAWMASALGCTAAEAESAETGASSVSDEG
VRSP*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001660	SAM
IPR013761	SAM/pointed_sf