prot_P-canaliculata_contig9392.23405.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig9392.23405.1
Unique Nameprot_P-canaliculata_contig9392.23405.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length116
Homology
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BLAST of mRNA_P-canaliculata_contig9392.23405.1 vs. uniprot
Match: A0A6H5L4D5_9PHAE (PFU domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L4D5_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 5.010e-29
Identity = 58/105 (55.24%), Postives = 74/105 (70.48%), Query Frame = 0 
Query:    7 GTDGKNDVPQYELCAVLTGHTGDVRSLAAGARGTHLYSGGRDNKVMAWELDESGRVAAGIHETPAAEVSLPDWVNALTVREC--GKELVVAGCSDGVLYAIELQE 109
            G   + D+P++ LCA L GHTGDVRSLA G R  +LYSG RD+ VMAW LDE G +  G H  PAA+V+LPDWVNAL V+    G+E++V GC DG +YA+  +E
Sbjct:   26 GAADERDIPEFSLCAALVGHTGDVRSLAVGKR--NLYSGARDSVVMAWPLDEDGHID-GTHVAPAAQVTLPDWVNALAVKSPAGGEEVIVGGCKDGGIYAVGWEE 127
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9392.23405.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L4D5_9PHAE5.010e-2955.24PFU domain-containing protein n=2 Tax=Ectocarpus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 69..106
e-value: 78.0
score: 5.1
coord: 16..55
e-value: 4.1E-5
score: 33.0
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 23..64
score: 12.58
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 13..115
e-value: 2.2E-12
score: 48.3
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 42..56
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 23..64
score: 11.787
IPR011044Quinoprotein amine dehydrogenase, beta chain-likeSUPERFAMILY50969YVTN repeat-like/Quinoprotein amine dehydrogenasecoord: 18..108

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig9392contigP-canaliculata_contig9392:2069..3064 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig9392.23405.1mRNA_P-canaliculata_contig9392.23405.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig9392 2068..3064 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig9392.23405.1 ID=prot_P-canaliculata_contig9392.23405.1|Name=mRNA_P-canaliculata_contig9392.23405.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=116bp
PANPNPGTDGKNDVPQYELCAVLTGHTGDVRSLAAGARGTHLYSGGRDNK
VMAWELDESGRVAAGIHETPAAEVSLPDWVNALTVRECGKELVVAGCSDG
VLYAIELQEDSRGGAK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
IPR011044Quino_amine_DH_bsu