prot_P-canaliculata_contig93509.23358.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig93509.23358.1
Unique Nameprot_P-canaliculata_contig93509.23358.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length154
Homology
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BLAST of mRNA_P-canaliculata_contig93509.23358.1 vs. uniprot
Match: UPI00168411B5 (Glycosyltransferase family 2 protein n=1 Tax=Pseudanabaena sp. FACHB-2040 TaxID=2692859 RepID=UPI00168411B5)

HSP 1 Score: 56.2 bits (134), Expect = 2.300e-6
Identity = 24/91 (26.37%), Postives = 50/91 (54.95%), Query Frame = 0 
Query:    5 VGHGSGVLFRKSLAETIDFFNEDLRNDGGEGCADWLFYLDLSHLGTVLAVPVLTVVYRISPQSMSSNPEKMIQSHAKVMAQALLYKPDLDR 95
            +G+ S  L R+   + +  ++    + G +GC DW  YL ++       VP+  V YR + +SMS++  +M  SH+ ++++ ++  P++ R
Sbjct:  158 LGNASASLIRRECFDEVGHYDNQFLSQGAQGCEDWDLYLRIAENYQFRVVPIFLVGYRKTAESMSTDFNRMANSHSIMISKMMMRHPEISR 248
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig93509.23358.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI00168411B52.300e-626.37Glycosyltransferase family 2 protein n=1 Tax=Pseud... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029044Nucleotide-diphospho-sugar transferasesGENE3D3.90.550.10coord: 1..101
e-value: 1.5E-6
score: 29.6
IPR029044Nucleotide-diphospho-sugar transferasesSUPERFAMILY53448Nucleotide-diphospho-sugar transferasescoord: 6..126
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..38
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 39..61
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 62..154

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig93509contigP-canaliculata_contig93509:562..1023 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig93509.23358.1mRNA_P-canaliculata_contig93509.23358.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig93509 562..1035 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig93509.23358.1 ID=prot_P-canaliculata_contig93509.23358.1|Name=mRNA_P-canaliculata_contig93509.23358.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=154bp
MGNLVGHGSGVLFRKSLAETIDFFNEDLRNDGGEGCADWLFYLDLSHLGT
VLAVPVLTVVYRISPQSMSSNPEKMIQSHAKVMAQALLYKPDLDRTLIAC
CNARFQSMFIGRWVRNKQYATAACAWFRLCRRDTDRALTLLNYPLKRLSF
AMLR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR029044Nucleotide-diphossugar_trans