prot_P-canaliculata_contig93487.23354.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig93487.23354.1
Unique Nameprot_P-canaliculata_contig93487.23354.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length312
Homology
BLAST of mRNA_P-canaliculata_contig93487.23354.1 vs. uniprot
Match: A0A518BDC1_9BACT (ECF RNA polymerase sigma factor SigW n=1 Tax=Planctomycetes bacterium Pla133 TaxID=2528011 RepID=A0A518BDC1_9BACT)

HSP 1 Score: 113 bits (282), Expect = 4.120e-24
Identity = 98/310 (31.61%), Postives = 148/310 (47.74%), Query Frame = 0
Query:    4 GERALSGPDGRYVLGHNPPGEFQVEARADGYFDGAVEGLELRLREDSFGADLVLDDAPFISGVVVDQDGAPIAGQRVWAWPVVASGHSRPKAADTGPDGRFRVGAVGPQAHDLQAGRRGYVQTGAQREGRVRAHPGDEDVRVVLRRMANHTILVLDDATDEPIEQFGITVLKGDGARARSIARGRRPPPIEEHASGQVELPVRVDDDGILVVATGYRRHAQ---RFAFDEGSSTTRTIRLK----KSPI--LTGRVLSGDRPIAGAAVVLESKQWLGGR---LPDPS--VFISDGAVPSSAESGADGRFS 299
            G+   S  DG + L     G   +E RA+G F  A   + LR    + G ++ L+    + G  VD+ G P+AG RV   PV     SR   A +GPDG+F +  +  +   L+    G+    ++ E      PG   +RV L   A+    V+DDAT +PIE+FG+ V KG G+       G   PP++++  G+     R + D ++V A GY R             S  ++T+RL+    + P+  +TGRVL    P+A A V LE  +W+  R   L D S  VF+S G+      + ADG F+
Sbjct:  430 GDTTTSAEDGSFRLDRVSLGPDALEVRAEG-FPIAEADITLRASSVTAGVEVRLEPEASLRGQAVDRLGQPVAGARVELDPVDEDDISR---AVSGPDGQFELPFLWLEGAHLRVDAEGFDLWDSE-EWDQEFEPGAGAIRVELNPAASVEFSVVDDATGQPIERFGLAVHKGAGSEGMQPV-GDTEPPLQDYPGGRAVAGAREEYDEVVVCAEGYERFQDDVLTVGISGESLRSQTVRLRPFQAQPPVGSITGRVLRDGAPLANAFVELEGGKWMTERMKRLTDQSGDVFMSTGSSLPLVRTSADGSFT 733          
BLAST of mRNA_P-canaliculata_contig93487.23354.1 vs. uniprot
Match: A0A7Y4SWE5_9BACT (Carboxypeptidase regulatory-like domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7Y4SWE5_9BACT)

HSP 1 Score: 63.5 bits (153), Expect = 1.660e-7
Identity = 67/265 (25.28%), Postives = 117/265 (44.15%), Query Frame = 0
Query:    5 ERALSGPDGRYVLGHNPPGEFQVEARADGYFDGAVEGLELRLREDSFGADLVLDDAP---FISGVVVDQDGAPIAGQRVWAWPVVASGHSRPKAADTGPDGRFRVGAVGPQAHDLQAGRRGYVQTGAQREGRVR-AHPGDEDVRVVLRRMANHTILVLD-DATDEPIEQFGITVLKGDGARARSIARGRRPPPIEEHASGQVELPVRVDDDGILVVATGYRRHAQRFAFDEGSSTTRTIRLKKSPILTGRVLSGDRPIAGAAVVL 264
            ++A +  DG + +   PPG + + AR +  +       ++R+ E++   +LVL+  P    I+G+V+D DGAP+AG R+ A  V            +  +GRF +  +      L+       + G+  E  V     G  +V + L RM    + V++ D T  P+E FG ++    G+    +  G RP P      G   +      + + + A G+     +   D+   T    +  ++ I +GRV SG  P+ GA V L
Sbjct:  170 DQARAAEDGTFRIVGLPPGRYGIWARCEASWWATTSAFDVRVAEETTVPELVLEPLPPQHCIAGLVLDPDGAPVAGARIEASSVEMRVDCSNHGTSSDAEGRFHLHVLPLSCGPLKVS--AESEDGSFSEVEVSPVEAGQRNVVLQLGRMRELVVRVVEPDGT--PVESFGWSLTIETGSSF--MTSGARPEP---RPGGLATIRFSRAIEELSIEAPGFEEQDVQVGPDDRVITVTLSKGARTEI-SGRVTSGAWPVGGAHVDL 424          
BLAST of mRNA_P-canaliculata_contig93487.23354.1 vs. uniprot
Match: UPI001CD02DA1 (carboxypeptidase-like regulatory domain-containing protein n=1 Tax=Cystobacter gracilis TaxID=394092 RepID=UPI001CD02DA1)

HSP 1 Score: 61.2 bits (147), Expect = 1.060e-6
Identity = 81/315 (25.71%), Postives = 131/315 (41.59%), Query Frame = 0
Query:   12 DGRYVLGHNPPGEFQVEARADGYFDGAVEGLELRLREDSFGADLVLDDAPFISGVVVDQDGAPIAGQRVWAWPVVASGHSRPKAADTGPD---GRFRVGAVGPQAHDLQAGRRGYVQTGAQREGRVRAHPGDEDVRVVLRRMANHTILVLDDATDE-PIEQFGITVL-------KGDGA---RARSIARGRRPPPIEEHASGQVELPVRVDDDGILVVATGYRRHAQRFAFDEGSSTTRTIRLKKSPILTGRVLSGD-RPIAGAAVVLESKQWLGGRLPDPSVFISDGAVPS-SAESGADGRFSIPIVGGGEHRL 310
            DGRY +G   PG ++ + +  GY +   E  E  L +     DL L  A  +SGVVVD++G+P+A  R+                DT      GRF + A G  A DL+   + ++        R+       D+RV+LRR A     V+   TDE  + Q  ++V        +G+ +    AR+ ++GR    +     G+  +  + D DG+       R  A+             +R      L+G V+ G   P+A A +  +++  L    P     IS G        +G DGRF++  +  G + L
Sbjct:  393 DGRYRVGPMEPGTYEFDIKRSGYVEVLSE--EHELEQGGKPVDLTLRRAAIVSGVVVDEEGSPVADIRLQLDRSSEDSEESSPRGDTATSDAQGRFSLDAPGAGAWDLRIDDKRFISQ------RLSIQAPASDLRVILRRGAT----VVGTVTDEHAVAQASVSVTLWVEVTEQGEASSVRHARTDSQGRFT--LRGLRPGRFMVEAKADQDGME------RATAKPVELRGTEQAAVALRFTAGRTLSGIVVDGHGEPVADAFI--QAQAPLRAAPPWRRHVISCGTGRDMGVHTGPDGRFTLKHLVEGTYEL 685          
BLAST of mRNA_P-canaliculata_contig93487.23354.1 vs. uniprot
Match: A0A4Y6BEW5_MYXXA (Uncharacterized protein n=2 Tax=Myxococcus xanthus TaxID=34 RepID=A0A4Y6BEW5_MYXXA)

HSP 1 Score: 57.4 bits (137), Expect = 1.890e-5
Identity = 43/143 (30.07%), Postives = 69/143 (48.25%), Query Frame = 0
Query:   35 FDGAVEGLELRLREDSFGADLVLD--DAPFISGVVVDQDGAPIAGQRVWAWPVVASGHSRPKAADTGPDGRFRVGAVGPQAHDLQAGRRGYVQTGAQREGRVRAHPGDEDVRVVLRRMANHTILVLDDATDEPIEQFGITVLK 175
            F G +   E    ++  GA+ VL+   AP++ G+V D+   P++G RV A  +   G S P A ++G DGRFR+G +GP  HD      GY+ T       +R+        + L R    T + + DA   P     +T+++
Sbjct:  336 FHGGMTASEQVTLDERDGAETVLELKPAPYLEGLVQDEARQPVSGARVSAI-IKRHGSSHPDA-ESGLDGRFRLGPLGPDTHDFMVSAPGYLDTLVN----LRSSTNTSSATITLFRATTITGVAV-DAHGSPAPGVALTLMR 471          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig93487.23354.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A518BDC1_9BACT4.120e-2431.61ECF RNA polymerase sigma factor SigW n=1 Tax=Planc... [more]
A0A7Y4SWE5_9BACT1.660e-725.28Carboxypeptidase regulatory-like domain-containing... [more]
UPI001CD02DA11.060e-625.71carboxypeptidase-like regulatory domain-containing... [more]
A0A4Y6BEW5_MYXXA1.890e-530.07Uncharacterized protein n=2 Tax=Myxococcus xanthus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF13620CarboxypepD_regcoord: 63..128
e-value: 2.0E-8
score: 34.4
NoneNo IPR availableGENE3D2.60.40.1120coord: 63..155
e-value: 6.2E-5
score: 25.2
IPR008969Carboxypeptidase-like, regulatory domain superfamilySUPERFAMILY49464Carboxypeptidase regulatory domain-likecoord: 63..155

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig93487contigP-canaliculata_contig93487:36..971 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig93487.23354.1mRNA_P-canaliculata_contig93487.23354.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig93487 36..971 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig93487.23354.1 ID=prot_P-canaliculata_contig93487.23354.1|Name=mRNA_P-canaliculata_contig93487.23354.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=312bp
GSIGERALSGPDGRYVLGHNPPGEFQVEARADGYFDGAVEGLELRLREDS
FGADLVLDDAPFISGVVVDQDGAPIAGQRVWAWPVVASGHSRPKAADTGP
DGRFRVGAVGPQAHDLQAGRRGYVQTGAQREGRVRAHPGDEDVRVVLRRM
ANHTILVLDDATDEPIEQFGITVLKGDGARARSIARGRRPPPIEEHASGQ
VELPVRVDDDGILVVATGYRRHAQRFAFDEGSSTTRTIRLKKSPILTGRV
LSGDRPIAGAAVVLESKQWLGGRLPDPSVFISDGAVPSSAESGADGRFSI
PIVGGGEHRLIV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008969CarboxyPept-like_regulatory