prot_P-canaliculata_contig934.23350.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig934.23350.1
Unique Nameprot_P-canaliculata_contig934.23350.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length302
Homology
BLAST of mRNA_P-canaliculata_contig934.23350.1 vs. uniprot
Match: A0A6B0Z2M4_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A6B0Z2M4_9CHLR)

HSP 1 Score: 63.5 bits (153), Expect = 1.260e-7
Identity = 36/83 (43.37%), Postives = 45/83 (54.22%), Query Frame = 0
Query:   13 DRQVLHVFHRETCGSRWNNRRGWAENAADLRDWFGVQCSLPQSTERNGRVVVLTMTVDELTGNGLVGTIPAELGRLESLMKLD 95
            DRQ+L   +  T G  W + R W   AADL  W GV      +T+  GRV +L      L+GN L G IP ELG+L SL+ LD
Sbjct:   38 DRQILEALYNATDGPNWTDSRNW-NTAADLATWSGV------NTDDQGRVDILN-----LSGNQLTGEIPPELGKLPSLISLD 108          
BLAST of mRNA_P-canaliculata_contig934.23350.1 vs. uniprot
Match: A0A6L7ZXZ1_9PROT (Uncharacterized protein n=2 Tax=Bacteria TaxID=2 RepID=A0A6L7ZXZ1_9PROT)

HSP 1 Score: 59.3 bits (142), Expect = 3.780e-6
Identity = 36/96 (37.50%), Postives = 51/96 (53.12%), Query Frame = 0
Query:    1 MSSGGGAGSSGLDRQVLHVFHRETCGSRWNNRRGWAENAADLRDWFGVQCSLPQSTERNGRVVVLTMTVDELTGNGLVGTIPAELGRLESLMKLDL 96
            +  G G   S LD +VL   +    GS W N +GW  N   L +W+G+      + +  GRV  L     +LT NGLVG++PA LG L S+++L L
Sbjct:  360 IEDGRGPICSDLDAEVLRALYEAAGGSSWANSQGWLGNDP-LNEWYGI------TADSLGRVREL-----DLTQNGLVGSLPANLGNLVSMIRLRL 443          
BLAST of mRNA_P-canaliculata_contig934.23350.1 vs. uniprot
Match: A0A6N8V1J3_9BACT (Uncharacterized protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A6N8V1J3_9BACT)

HSP 1 Score: 58.2 bits (139), Expect = 9.660e-6
Identity = 34/84 (40.48%), Postives = 42/84 (50.00%), Query Frame = 0
Query:   13 DRQVLHVFHRETCGSRWNNRRGWAENAADLRDWFGVQCSLPQSTERNGRVVVLTMTVDELTGNGLVGTIPAELGRLESLMKLDL 96
            D  +L + +  T G  W N R W    A L  W+GVQ       +  GRVV L         N L GT+PAELG L+SL +LDL
Sbjct:  212 DHDILALLYEATGGPDWFNNRNWL-TGAPLAQWYGVQ------VDDEGRVVGLISR-----SNNLTGTVPAELGNLDSLTELDL 283          
BLAST of mRNA_P-canaliculata_contig934.23350.1 vs. uniprot
Match: A0A6B0YWM5_9CHLR (Uncharacterized protein (Fragment) n=1 Tax=Caldilineaceae bacterium SB0664_bin_27 TaxID=2605260 RepID=A0A6B0YWM5_9CHLR)

HSP 1 Score: 57.4 bits (137), Expect = 1.020e-5
Identity = 29/75 (38.67%), Postives = 42/75 (56.00%), Query Frame = 0
Query:   14 RQVLHVFHRETCGSRWNNRRGWAENAADLRDWFGVQCSLPQSTERNGRVVVLTMTVDELTGNGLVGTIPAELGRL 88
            R+ L      T G++W N   W ++AA L  WFGV+      T+ +GRV  +     +L+GNGLVGT+P  +G L
Sbjct:  232 REALVTVFFATGGAQWENSTNWRDSAAPLAQWFGVK------TDADGRVTEI-----DLSGNGLVGTLPPRIGAL 295          
BLAST of mRNA_P-canaliculata_contig934.23350.1 vs. uniprot
Match: A0A496W1L4_9GAMM (PKD domain-containing protein (Fragment) n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A496W1L4_9GAMM)

HSP 1 Score: 58.2 bits (139), Expect = 1.060e-5
Identity = 32/82 (39.02%), Postives = 38/82 (46.34%), Query Frame = 0
Query:   15 QVLHVFHRETCGSRWNNRRGWAENAADLRDWFGVQCSLPQSTERNGRVVVLTMTVDELTGNGLVGTIPAELGRLESLMKLDL 96
            + L  F+  T G  W N R W E +     W+G+ CS    TE              L  N L GTIPAELG L SL KL+L
Sbjct:  902 EALVAFYESTDGDNWKNNRSWNETSTPC-SWYGISCSSGYVTELY------------LKSNKLTGTIPAELGNLSSLQKLNL 970          
BLAST of mRNA_P-canaliculata_contig934.23350.1 vs. uniprot
Match: A0A2D8QN12_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2D8QN12_9PROT)

HSP 1 Score: 57.8 bits (138), Expect = 1.290e-5
Identity = 33/85 (38.82%), Postives = 41/85 (48.24%), Query Frame = 0
Query:   12 LDRQVLHVFHRETCGSRWNNRRGWAENAADLRDWFGVQCSLPQSTERNGRVVVLTMTVDELTGNGLVGTIPAELGRLESLMKLDL 96
            ++R+ L   +  T G+ W +  GW   A    DWFGV CS       +G V  L    + LTG     TIP ELG L SL  LDL
Sbjct:   28 IEREALVALYNSTDGANWKDNTGWLGEAGTECDWFGVTCS-------SGVVTRLIFPYNSLTG-----TIPTELGNLTSLTFLDL 100          
BLAST of mRNA_P-canaliculata_contig934.23350.1 vs. uniprot
Match: A0A143XNX8_9BACT (Uncharacterized protein n=1 Tax=Alistipes sp. CHKCI003 TaxID=1780376 RepID=A0A143XNX8_9BACT)

HSP 1 Score: 55.8 bits (133), Expect = 5.690e-5
Identity = 31/86 (36.05%), Postives = 44/86 (51.16%), Query Frame = 0
Query:   12 LDRQVLHVFHRETCGSRWNNRRGWAENAADLRDWFGVQCSLPQSTERNGRVVVLTMTVDELTGNGLVGTIPAELGRLESLMKLDLR 97
            ++R+ L  F+R T G  W    GW  +   +  W+GV  S        GRV  +      L  NGL G IPAE+G L+ L++LDL+
Sbjct:  758 IERKALAAFYRATGGGNWKKSDGWCSDRP-VGTWYGVTVS-------GGRVTEI-----RLPDNGLSGRIPAEIGDLKGLLRLDLK 830          
BLAST of mRNA_P-canaliculata_contig934.23350.1 vs. uniprot
Match: A0A7S2PVE3_9DINO (Hypothetical protein n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2PVE3_9DINO)

HSP 1 Score: 55.1 bits (131), Expect = 5.710e-5
Identity = 31/85 (36.47%), Postives = 46/85 (54.12%), Query Frame = 0
Query:   13 DRQVLHVFHRETCGSRWNNRRGWAENAADLRD-WFGVQCSLPQSTERNGRVVVLTMTVDELTGNGLVGTIPAELGRLESLMKLDL 96
            +R++L   +    G  W     W+ ++    D W+GV C      + +G+V+ L     EL+ NGL G IP +LGRL SL+KLDL
Sbjct:   64 ERRILLQLYAMAGGGNWRESDNWSPDSDPCWDQWYGVTC------DEHGKVIHL-----ELSDNGLDGEIPPDLGRLTSLLKLDL 137          
BLAST of mRNA_P-canaliculata_contig934.23350.1 vs. uniprot
Match: A0A6N9A9D7_9BACT (Uncharacterized protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A6N9A9D7_9BACT)

HSP 1 Score: 55.5 bits (132), Expect = 7.260e-5
Identity = 30/84 (35.71%), Postives = 46/84 (54.76%), Query Frame = 0
Query:   14 RQVLHVFHRETCGSRWNNRRGWAENAADLRDWFGVQCSLPQSTERNGRVVVLTMTVDELTGNGLVGTIPAELGRLESLMKLDLR 97
            R++L + +  T G  W++ + W      L  W GV       T+R+G+V+ L++       NGL+GT+P E+G L SL  LDLR
Sbjct:  328 REILTILYETTNGEGWDSNQNWLAELP-LGQWAGVD------TDRDGQVIRLSLPY-----NGLLGTLPPEIGLLSSLRSLDLR 399          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig934.23350.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6B0Z2M4_9CHLR1.260e-743.37Uncharacterized protein n=1 Tax=Chloroflexi bacter... [more]
A0A6L7ZXZ1_9PROT3.780e-637.50Uncharacterized protein n=2 Tax=Bacteria TaxID=2 R... [more]
A0A6N8V1J3_9BACT9.660e-640.48Uncharacterized protein n=1 Tax=Gemmatimonadetes b... [more]
A0A6B0YWM5_9CHLR1.020e-538.67Uncharacterized protein (Fragment) n=1 Tax=Caldili... [more]
A0A496W1L4_9GAMM1.060e-539.02PKD domain-containing protein (Fragment) n=1 Tax=G... [more]
A0A2D8QN12_9PROT1.290e-538.82Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A143XNX8_9BACT5.690e-536.05Uncharacterized protein n=1 Tax=Alistipes sp. CHKC... [more]
A0A7S2PVE3_9DINO5.710e-536.47Hypothetical protein n=1 Tax=Brandtodinium nutricu... [more]
A0A6N9A9D7_9BACT7.260e-535.71Uncharacterized protein n=1 Tax=Gemmatimonadetes b... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 232..256
e-value: 8.1
score: 14.0
coord: 136..160
e-value: 3.6
score: 16.6
coord: 88..112
e-value: 42.0
score: 8.1
coord: 184..208
e-value: 25.0
score: 10.0
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 90..149
e-value: 1.7E-7
score: 30.9
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 178..274
e-value: 5.9E-30
score: 105.9
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 12..177
e-value: 3.5E-42
score: 145.9
NoneNo IPR availablePANTHERPTHR27000FAMILY NOT NAMEDcoord: 219..281
NoneNo IPR availablePANTHERPTHR27000FAMILY NOT NAMEDcoord: 120..272
NoneNo IPR availablePANTHERPTHR27000:SF541coord: 219..281
NoneNo IPR availablePANTHERPTHR27000:SF541coord: 67..229
coord: 59..158
NoneNo IPR availablePANTHERPTHR27000FAMILY NOT NAMEDcoord: 67..229
coord: 59..158
NoneNo IPR availablePANTHERPTHR27000:SF541coord: 120..272
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 34..272

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig934contigP-canaliculata_contig934:5287..21902 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig934.23350.1mRNA_P-canaliculata_contig934.23350.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig934 4914..21974 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig934.23350.1 ID=prot_P-canaliculata_contig934.23350.1|Name=mRNA_P-canaliculata_contig934.23350.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=302bp
MSSGGGAGSSGLDRQVLHVFHRETCGSRWNNRRGWAENAADLRDWFGVQC
SLPQSTERNGRVVVLTMTVDELTGNGLVGTIPAELGRLESLMKLDLRVNN
LSGRIPPELGQLVALETLGLARNELDGSIPPEFGQLRALKELYLSFNQLS
GRIPSELGRLGAMVQLNISENKLSGSIPPELGCLDALTQLSISGNKLSGS
IPPELGQLSALEGLSLVHNRLSGSIPSGLGQLRALKGLHLSFNQLIGSIP
PELGQLSALETLWLAGNQLSGEKYGRSWLAATAMWWRAYRYFLSVGRPRV
P*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf