prot_P-canaliculata_contig92881.23287.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig92881.23287.1
Unique Nameprot_P-canaliculata_contig92881.23287.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length171
Homology
BLAST of mRNA_P-canaliculata_contig92881.23287.1 vs. uniprot
Match: UPI0019062FF7 (type II secretion system GspH family protein n=1 Tax=Luteolibacter pohnpeiensis TaxID=454153 RepID=UPI0019062FF7)

HSP 1 Score: 94.0 bits (232), Expect = 6.210e-21
Identity = 61/143 (42.66%), Postives = 79/143 (55.24%), Query Frame = 0
Query:    2 AGFTLIELLIVITIXXXXXXXXXXXXXXVQAAAKKTQATAMISGIQNAIANYNNEYGKLPVPNGGRSARESPIALDGTLLAILMGSDAGQKFNPRKIQFLEPKEAKDGFNGVVMAGETPRV-LTDPWGNPYMTLMDANYDGKV 143
            +GFTLIELL+VITI                  A+KT ATAM +GI +A+  Y NEY  +P   G   + +SP  +   LL IL G D G   NP+KI+FLE K+AK   +G  M+       L DPWGNPY   +D +Y+ KV
Sbjct:   13 SGFTLIELLVVITIIMVLASAAFVVGSKAINKARKTVATAMATGIDSAVNRYYNEYSSIP-DVGSSVSTDSPEGV--RLLNILAGLDDGDD-NPKKIKFLELKQAKGKLDGATMSDSGKYTGLYDPWGNPYTIFLDQDYEEKV 151          
BLAST of mRNA_P-canaliculata_contig92881.23287.1 vs. uniprot
Match: A0A2E8CR74_9BACT (Uncharacterized protein n=2 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A2E8CR74_9BACT)

HSP 1 Score: 92.8 bits (229), Expect = 2.500e-20
Identity = 62/178 (34.83%), Postives = 90/178 (50.56%), Query Frame = 0
Query:    2 AGFTLIELLIVITIXXXXXXXXXXXXXXVQAAAKKTQATAMISGIQNAIANYNNEYGKLPVPNGGRSARESPIALDGTLLAILMGSDAGQK---FNPRKIQFLEPKEAKDGFNGVVMAG-----ETPRVLTDPWGNPYMTLMDANYDGKVRNPDTASESQSQFVNQDAIVWSSGPDGD 171
            AGFTL+ELL+VI I              V   A+ T+A+     ++ AI++Y  EY K PV  G R   E  +  D  L+ +L+GSD   +    NPR+I F   K+AK G  G   +G          L DPW + Y   MD +Y+ +V  PD  + + SQ++ +  ++WSSG  GD
Sbjct:   18 AGFTLLELLVVIAIIGILAGLMYPAATGVMRRAESTRASNTAYNLKAAISSYFTEYRKYPVI-GDREETEE-LRSDEELMDVLLGSDKEAEDGGLNPRRIAFYSGKQAKRGDEGKYKSGINMDDSGGGTLWDPWFDYYYIRMDLDYNNRVETPDWDTRTDSQYLPESILIWSSGKSGD 193          
BLAST of mRNA_P-canaliculata_contig92881.23287.1 vs. uniprot
Match: A0A1V6JBG2_9BACT (Type II secretion system protein G n=1 Tax=Verrucomicrobia bacterium ADurb.Bin018 TaxID=1852925 RepID=A0A1V6JBG2_9BACT)

HSP 1 Score: 67.0 bits (162), Expect = 1.130e-10
Identity = 44/173 (25.43%), Postives = 77/173 (44.51%), Query Frame = 0
Query:    1 KAGFTLIELLIVITIXXXXXXXXXXXXXXVQAAAKKTQATAMISGIQNAIANYNNEYGKLPVPNGGRSARESPIALDGTLLAILMGSDAG--QKFNPRKIQFLEPKEAKDGFNGVVMAGETPRVLTDPWGNPYMTLMDANYDGKVRNPDTASESQSQFVNQDAIVWSSGPDGD 171
            + GFTL+E+L+VITI              +   AK +QA +    +   +  Y  EY + P      +  +  +  DG  +  +     G   + NP++I F +P        G     ET     DPWG P++ ++D + DG++ +P  +++     +    + WS+GPD D
Sbjct:   16 RQGFTLVEILVVITILGILMAMMVPAAGLIIKRAKVSQAKSDAGVVVAIMMKYRAEYNRWP----SFAKSQGTLRTDGDWVKAMSPKPGGGFDENNPKRIVFFQP--------GAGALDETTGAFVDPWGQPFVYMLDIDGDGQMDDPSGSAQKMGASI----LAWSAGPDQD 172          
BLAST of mRNA_P-canaliculata_contig92881.23287.1 vs. uniprot
Match: A0A350F272_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A350F272_9BACT)

HSP 1 Score: 63.2 bits (152), Expect = 7.770e-9
Identity = 63/218 (28.90%), Postives = 81/218 (37.16%), Query Frame = 0
Query:    2 AGFTLIELLIVITIXXXXXXXXXXXXXXVQAAAKKTQATAMISGIQNAIANYNNEYGKLPVP-----------NGGR---------SARESPIALDGT-LLAILMGSDAGQKFNPRKIQFLEPKE------AKDGFNGVVMAGETPRVLTDPWGNPYMTLMDANYD-----------------GKVRNPD----TASESQSQF-VNQDAIVWSSGPDG 170
            AGFTL+ELL+VI I               +  A   +A A I+ +  AI  Y  EYG+ PVP           N G          +    P  +D   ++AIL+  D     NP                AKD  +          V  DPWGNPY+   D NYD                 G   NP     T + ++S F   Q  +VWS GPDG
Sbjct:   13 AGFTLVELLVVIAIIATLAGLLIPAVTIAKQKASVARAKAEINNLVTAINAYKQEYGRYPVPKDAEAIAAQAANDGNYTFGNNLFTTGSGQPYLIDNRGVIAILLARDTAP--NPXXXXXXXXXXXXXXXXAKDAVDSSSSGIGPDNVYRDPWGNPYVITFDLNYDEVSEDVLYREPMVSAVGGNNANPGFGGHTYNTTRSFFQARQGVMVWSLGPDG 228          
BLAST of mRNA_P-canaliculata_contig92881.23287.1 vs. uniprot
Match: A0A2E9ZQ09_9BACT (Uncharacterized protein n=7 Tax=PVC group TaxID=1783257 RepID=A0A2E9ZQ09_9BACT)

HSP 1 Score: 57.8 bits (138), Expect = 7.110e-7
Identity = 41/119 (34.45%), Postives = 52/119 (43.70%), Query Frame = 0
Query:   80 LLAILMG----------SDAGQKFNPRKIQFLEPKEA-KDGFNGVVMAGETPRVLTDPWGNPYMTLMDANYDGKVRNPDTASESQSQF-----------------VNQDAIVWSSGPDG 170
            L+AIL G          S++  K NPRK+ FL  K A  +   GV + G    V  DPWGNPY+  +D N+DGK  +      S S                    N   +VWS GPDG
Sbjct:  127 LVAILQGLEVFRNGRRTSNSNHKMNPRKVAFLNAKNATSESAPGVGVDG----VYRDPWGNPYIVTVDGNHDGKTIDAFYGQGSVSAAGKGAGLNGLTKTKGGYNANTPVMVWSFGPDG 241          
BLAST of mRNA_P-canaliculata_contig92881.23287.1 vs. uniprot
Match: A0A2D9KQ63_9RICK (Uncharacterized protein n=1 Tax=Rickettsiales bacterium TaxID=2026788 RepID=A0A2D9KQ63_9RICK)

HSP 1 Score: 55.8 bits (133), Expect = 3.380e-6
Identity = 35/101 (34.65%), Postives = 44/101 (43.56%), Query Frame = 0
Query:   87 SDAGQKFNPRKIQFLEPKEAKDGFNGVVMAGETPRVLTDPWGNPYMTLMDANYDGKVRNPDTASESQSQ-----------------FVNQDAIVWSSGPDG 170
            S+   K NPRK++FL  +EA       V    T  V  DPWGNPY+  +D N+DGK  +      S S                    N   +VWS GPDG
Sbjct:  141 SNRNHKLNPRKVKFLNAREATSVSEPGV---GTDGVYRDPWGNPYIVTVDGNHDGKAIDAFYGRGSVSAAGKGAGLNGLTKAKGGYLANVPVMVWSLGPDG 238          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig92881.23287.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
UPI0019062FF76.210e-2142.66type II secretion system GspH family protein n=1 T... [more]
A0A2E8CR74_9BACT2.500e-2034.83Uncharacterized protein n=2 Tax=Verrucomicrobiales... [more]
A0A1V6JBG2_9BACT1.130e-1025.43Type II secretion system protein G n=1 Tax=Verruco... [more]
A0A350F272_9BACT7.770e-928.90Uncharacterized protein n=1 Tax=Verrucomicrobiales... [more]
A0A2E9ZQ09_9BACT7.110e-734.45Uncharacterized protein n=7 Tax=PVC group TaxID=17... [more]
A0A2D9KQ63_9RICK3.380e-634.65Uncharacterized protein n=1 Tax=Rickettsiales bact... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000983Bacterial general secretion pathway protein G-type pilinPRINTSPR00813BCTERIALGSPGcoord: 3..28
score: 41.03
coord: 39..57
score: 20.18
IPR012902Prokaryotic N-terminal methylation siteTIGRFAMTIGR02532TIGR02532coord: 2..22
e-value: 2.8E-7
score: 28.1
IPR012902Prokaryotic N-terminal methylation sitePFAMPF07963N_methylcoord: 2..22
e-value: 2.9E-6
score: 26.6
IPR012902Prokaryotic N-terminal methylation sitePROSITEPS00409PROKAR_NTER_METHYLcoord: 2..22
NoneNo IPR availableGENE3D3.30.700.10coord: 4..94
e-value: 3.2E-14
score: 56.0
NoneNo IPR availablePANTHERPTHR30093GENERAL SECRETION PATHWAY PROTEIN Gcoord: 2..85
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..30
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 31..171
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availableSUPERFAMILY54523Pili subunitscoord: 4..100
NoneNo IPR availableTMHMMTMhelixcoord: 10..32

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig92881contigP-canaliculata_contig92881:3..515 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig92881.23287.1mRNA_P-canaliculata_contig92881.23287.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig92881 3..515 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig92881.23287.1 ID=prot_P-canaliculata_contig92881.23287.1|Name=mRNA_P-canaliculata_contig92881.23287.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=171bp
KAGFTLIELLIVITIIATLAGLSFAAFAAVQAAAKKTQATAMISGIQNAI
ANYNNEYGKLPVPNGGRSARESPIALDGTLLAILMGSDAGQKFNPRKIQF
LEPKEAKDGFNGVVMAGETPRVLTDPWGNPYMTLMDANYDGKVRNPDTAS
ESQSQFVNQDAIVWSSGPDGD
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000983Bac_GSPG_pilin
IPR012902N_methyl_site