prot_P-canaliculata_contig9261.23248.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig9261.23248.1
Unique Nameprot_P-canaliculata_contig9261.23248.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length712
Homology
BLAST of mRNA_P-canaliculata_contig9261.23248.1 vs. uniprot
Match: A0A6H5LP07_9PHAE (SMP-LTD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LP07_9PHAE)

HSP 1 Score: 610 bits (1574), Expect = 3.060e-202
Identity = 332/492 (67.48%), Postives = 376/492 (76.42%), Query Frame = 0
Query:   21 TGGSDGAMVYFEGDLPTDDEWAAE--------GRPCRGELEQGERWQRGVTGRERMPFSGEP---ERRRPRKLALAARAREAIRRSILQTSRAVPTMRFPQMVACGMVFAVRGLTSNPWCTVASFFGARMYLKFIESIYLECLRERMMSDIKFEAVSRLHEGSPERARWINTALSAMWVPMLEPLLAKWISRQITRGIERSLPSNVSWVGLGKVTLGPRPPTIRYVQVRNVTSIAARKSEGQSNGIIDSVLLQADRPGGQVKGEHLVYLELGVDWTSYRSKVSLKLGEQSRRRNWWSVTSYVPSYRVKLCDLGIKAKVIVAMAVGEGRPFVKRLWVGFSEPPLTHMSLEALTGMDIANLPVLRKHLRHVVMRCLMPLTEPRYLNLEMRPLAPPPGPYRGAALAARVRPAADGVRRGVLSRVPAFGLRRLLRNKSRTAAAGEASFVAERVTDEGGGDGGDEDLPGHQEPLGGAIRRLLVDVGGDCREETVTAA 501
            +GGS+  M Y EGDL T     A         GRP   +  Q   WQ+G+        +G P    RR+PR LALAARAR AIR SI++TS+AVPTMRFPQMVAC MVFA R +T NPWC  ASF GARMYLKF+ESIYLECL+ERM SDIKFEAV+RLHEGSPERARW NTA++AMWVPMLEPLL+ W SRQITRGIERSLPSNVSWVGLGKVTLGP PP IRYVQV+NVTS+A R++ G SNGIIDSVLL+A +PGG++ GE++VYLE+GVDWTS RSKVSLKLGEQSRRRNWWS++SYVP+YRVKLCDLGIK KV+VAMAVG+GRPFVKRLWVGFSEPPLTHMSLEAL+GMDIANLPVLRKHLRHVVMRCLMPLTEPR+LN+E++P +PPP   RGAALAARVRPAA GVRR +  R P FGLR LL   +                                  L  A RRLLV+VGG+ R+ETV AA
Sbjct:  302 SGGSN--MGYSEGDLATHFGRDARRGHHHHDSGRPYAHQQHQ---WQQGL-------LTGGPGGLRRRQPRLLALAARARYAIRLSIMRTSKAVPTMRFPQMVACAMVFACRAVTKNPWCGAASFVGARMYLKFVESIYLECLKERMTSDIKFEAVARLHEGSPERARWFNTAVAAMWVPMLEPLLSGWTSRQITRGIERSLPSNVSWVGLGKVTLGPTPPKIRYVQVQNVTSLAQRRNMGTSNGIIDSVLLEAGQPGGEIAGENIVYLEVGVDWTSSRSKVSLKLGEQSRRRNWWSLSSYVPTYRVKLCDLGIKGKVVVAMAVGDGRPFVKRLWVGFSEPPLTHMSLEALSGMDIANLPVLRKHLRHVVMRCLMPLTEPRFLNIEVKPPSPPPSSSRGAALAARVRPAALGVRRRLPRRFPGFGLRTLLGRGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGRELEEATRRLLVEVGGEFRDETVMAA 781          
BLAST of mRNA_P-canaliculata_contig9261.23248.1 vs. uniprot
Match: A0A836CIY7_9STRA (SMP-LTD domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIY7_9STRA)

HSP 1 Score: 188 bits (477), Expect = 4.050e-46
Identity = 121/356 (33.99%), Postives = 181/356 (50.84%), Query Frame = 0
Query:   87 RAREAIRRSILQTSRAVPTMRFPQMVACGMVFAVRGLTSNPWCTVASFFGARMYLKFIESIYLECLRERMMSDIKFEAVSRLHE-----------GSPERARWINTALSAMWVPMLEPLLAKWISRQITRGIERSLPSNVSWVGLGKVTLGPRPPTIRYVQVRNVTSIAARKSEGQSNGIIDSVLLQADRPGGQVKGEHLVYLELGV---------------------------------------DWTSYRSKVSLKLGEQSRRRNWWSV--TSYVPSYRVKLCDLGIKAKVIVAMAVGEGRPFVKRLWVGFSE-PPLTHMSLEALTGMDIANLPVLRKHLRHVVMRCLMPLTEP 389
            R R A++ S+  T+ A P+MR    +AC  V  V                AR+YLK +E +Y E L E +M  I++EAV+R              G PERARW+NT    +W P+LEP L+  + R++   + RSLPSN++W G+ K TLG RPP + Y+ +++   + A      SN +  S+   A    G V  + +VYLE GV                                       D+ S  SKV++KL    +  +WWSV  +SY+P+YRVK   L I+ KV +   V  G PF++R+W+ F E PP    ++EA+ GMD++++P+LR+ L+H V + L PL +P
Sbjct:  262 RLRSAVKASM--TAGATPSMRLQSFLACAGVLGV---------------SARLYLKAVEGVYAEALGESIMQGIRYEAVARYXXXXXXXXXXXXAGVPERARWLNTLADTIWQPILEPALSGVLQRRLNIVMARSLPSNITWAGITKFTLGTRPPRLHYILLQSYDQMVAGMG---SNSVKRSIA--AAVACGDVAAKDIVYLEAGVHVCDREAYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWDFVSQDSKVTVKLALPRKHSHWWSVFLSSYMPAYRVKASALQIQGKVAMGFQVRPGPPFLRRIWLTFLETPPRVRFAVEAVRGMDLSSVPILRRALQHTVYKGLAPLCDP 595          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9261.23248.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LP07_9PHAE3.060e-20267.48SMP-LTD domain-containing protein n=2 Tax=Ectocarp... [more]
A0A836CIY7_9STRA4.050e-4633.99SMP-LTD domain-containing protein n=1 Tax=Tribonem... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR47042FAMILY NOT NAMEDcoord: 272..399
coord: 124..238
IPR031468Synaptotagmin-like mitochondrial-lipid-binding domainPROSITEPS51847SMPcoord: 172..397
score: 11.204

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig9261contigP-canaliculata_contig9261:724..6793 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig9261.23248.1mRNA_P-canaliculata_contig9261.23248.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig9261 584..7774 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig9261.23248.1 ID=prot_P-canaliculata_contig9261.23248.1|Name=mRNA_P-canaliculata_contig9261.23248.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=712bp
MMFGMPYSAGEEHRMGGDCGTGGSDGAMVYFEGDLPTDDEWAAEGRPCRG
ELEQGERWQRGVTGRERMPFSGEPERRRPRKLALAARAREAIRRSILQTS
RAVPTMRFPQMVACGMVFAVRGLTSNPWCTVASFFGARMYLKFIESIYLE
CLRERMMSDIKFEAVSRLHEGSPERARWINTALSAMWVPMLEPLLAKWIS
RQITRGIERSLPSNVSWVGLGKVTLGPRPPTIRYVQVRNVTSIAARKSEG
QSNGIIDSVLLQADRPGGQVKGEHLVYLELGVDWTSYRSKVSLKLGEQSR
RRNWWSVTSYVPSYRVKLCDLGIKAKVIVAMAVGEGRPFVKRLWVGFSEP
PLTHMSLEALTGMDIANLPVLRKHLRHVVMRCLMPLTEPRYLNLEMRPLA
PPPGPYRGAALAARVRPAADGVRRGVLSRVPAFGLRRLLRNKSRTAAAGE
ASFVAERVTDEGGGDGGDEDLPGHQEPLGGAIRRLLVDVGGDCREETVTA
AVSRSMAKGKQSKLSVPVGGLSSSLTAEHHDRPLDEEERAGGRLRRPQWK
PRLGDYPVADGSAAVDAEERLATDGASEQAAAAELVTSGEINAHDTAVVA
KVAAAAFVDRGRCGDDEVGLRSRAEIKRCRAARREQQRDALSPGVRRRAS
ALACVRRYWRCLPFTRRRQRYQRRFLGKGSPERDIMIRRVCSLSRPPSLG
GEKKHSVLRAA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR031468SMP_LBD