prot_P-canaliculata_contig92480.23234.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig92480.23234.1
Unique Nameprot_P-canaliculata_contig92480.23234.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length173
Homology
BLAST of mRNA_P-canaliculata_contig92480.23234.1 vs. uniprot
Match: A0A2N9FJC0_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9FJC0_FAGSY)

HSP 1 Score: 124 bits (310), Expect = 1.330e-29
Identity = 65/174 (37.36%), Postives = 101/174 (58.05%), Query Frame = 0
Query:    1 WRGALKREIDGQVARGVWKVVDRPEGKTALGTKAVFKRKVGQDGRVEKYKCRFVAENFRQIKWVHYQEFIGRQLDVEMAFLEVDITEELYVELPDGYRDSP---NQVGRLQKAMYGLMHAGLLWSKNFGGELIAEGFERSQADSCEFRRKHLGKIVVIIVVYIDDLLVLSGTKQ 171
            W+ A+K E+D  +  G W +VD P GK+A+G K V+K K   DG V++YK R VA+ F Q   + Y+E     +DV+ AFL  ++TEE+Y++LP G+   P   ++V RL++A+YGL  A   W   F   +   GF  S  DS  F R H    + ++++Y+DD+++     Q
Sbjct:  669 WQQAMKEELDALLKTGTWDLVDLPAGKSAIGCKWVYKMKTRSDGTVDRYKARLVAKGFTQEYGIDYEETFA-PMDVKNAFLNGELTEEVYMQLPPGFSQPPGFSHKVCRLRRALYGLKQAPRAWFAKFSSTISQHGFSASSYDSALFFR-HSDHGITLLLLYVDDMIITGDDVQ 840          
BLAST of mRNA_P-canaliculata_contig92480.23234.1 vs. uniprot
Match: A0A2N9EWW8_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9EWW8_FAGSY)

HSP 1 Score: 122 bits (305), Expect = 6.450e-29
Identity = 66/175 (37.71%), Postives = 102/175 (58.29%), Query Frame = 0
Query:    1 WRGALKREIDGQVARGVWKVVDRPEGKTALGTKAVFKRKVGQDGRVEKYKCRFVAENFRQIKWVHYQEFIGRQLDVEMAFLEVDITEELYVELPDGYRDSP---NQVGRLQKAMYGLMHAGLLWSKNFGGELIAEGFERSQADSCEF-RRKHLGKIVVIIVVYIDDLLVLSGTKQ 171
            W+ A+K E+D  +  G W +VD P GK+A+G K V+K K   DG V++YK R VA+ F Q   + Y+E     +DV+ AFL  ++TEE+Y++LP G+   P   ++V RL++A+YGL  A   W   F   +   GF  S  DS  F RR   G  + ++++Y+DD+++     Q
Sbjct:  656 WQQAMKEELDALLKTGTWDLVDLPAGKSAIGCKWVYKIKTRSDGTVDRYKARLVAKGFTQEYGIDYEETFA-PMDVKNAFLNGELTEEVYMQLPPGFSQPPGFSHKVCRLRRALYGLKQAPRAWFAKFSSTISQHGFSASSYDSALFFRRSDHG--ITLLLLYVDDMIITGDDVQ 827          
BLAST of mRNA_P-canaliculata_contig92480.23234.1 vs. uniprot
Match: A0A2N9FB11_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9FB11_FAGSY)

HSP 1 Score: 121 bits (304), Expect = 8.540e-29
Identity = 66/175 (37.71%), Postives = 101/175 (57.71%), Query Frame = 0
Query:    1 WRGALKREIDGQVARGVWKVVDRPEGKTALGTKAVFKRKVGQDGRVEKYKCRFVAENFRQIKWVHYQEFIGRQLDVEMAFLEVDITEELYVELPDGYRDSPN---QVGRLQKAMYGLMHAGLLWSKNFGGELIAEGFERSQADSCEF-RRKHLGKIVVIIVVYIDDLLVLSGTKQ 171
            W+ A+K E+D  +  G W +VD P GK+A+G K V+K K   DG V++YK R VA+ F Q   + Y+E     +DV+ AFL  ++TEE+Y++LP G+   P    +V RL++A+YGL  A   W   F   +   GF  S  DS  F RR   G  + ++++Y+DD+++     Q
Sbjct:  665 WQQAMKEELDALLKTGTWDLVDLPAGKSAIGCKWVYKIKTRSDGTVDRYKARLVAKGFTQEYGIDYEETFA-PMDVKNAFLNGELTEEVYMQLPPGFSQPPGFSPKVCRLRRALYGLKQAPRAWFAKFSSTISQHGFSASSYDSALFFRRSDHG--ITLLLLYVDDMIITGDDVQ 836          
BLAST of mRNA_P-canaliculata_contig92480.23234.1 vs. uniprot
Match: A0A438G0B6_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=3 Tax=Vitis vinifera TaxID=29760 RepID=A0A438G0B6_VITVI)

HSP 1 Score: 119 bits (299), Expect = 2.920e-28
Identity = 71/198 (35.86%), Postives = 106/198 (53.54%), Query Frame = 0
Query:    1 WRGALKREIDGQVARGVWKVVDRPEGKTALGTKAVFKRKVGQDGRVEKYKCRFVAENFRQIKWVHYQEFIG----------------------RQLDVEMAFLEVDITEELYVELPDGYRDS--PNQVGRLQKAMYGLMHAGLLWSKNFGGELIAEGFERSQADSCEFRRK-HLGKIVVIIVVYIDDLLVLSGTKQDE 173
            W+ A++ EID     G W + D P GK  +G K +F  K   DG VE++K R VA  F Q   + YQE                         +QLD++ AFL  D+ EE+Y+E+P G+ +S   NQV +LQK++YGL  +   W   F   ++  G+++ QAD   F +K H GK+ ++IV Y+DD++ LSG   +E
Sbjct:  177 WKKAVQDEIDALEKNGTWTITDLPVGKRPVGCKWIFTIKYKADGSVERFKARLVARGFTQSYGIDYQETFAPVAKLNTIRILLSLAVNQDWCLQQLDIKNAFLNGDLEEEVYIEIPPGFEESMAKNQVCKLQKSLYGLKQSPRAWFDRFTKAVLKLGYKQGQADHTLFVKKSHAGKMAILIV-YVDDII-LSGNDMEE 372          
BLAST of mRNA_P-canaliculata_contig92480.23234.1 vs. uniprot
Match: A0A438CI09_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438CI09_VITVI)

HSP 1 Score: 119 bits (299), Expect = 3.430e-28
Identity = 72/198 (36.36%), Postives = 106/198 (53.54%), Query Frame = 0
Query:    1 WRGALKREIDGQVARGVWKVVDRPEGKTALGTKAVFKRKVGQDGRVEKYKCRFVAENFRQIKWVHYQEFIG----------------------RQLDVEMAFLEVDITEELYVELPDGYRDS--PNQVGRLQKAMYGLMHAGLLWSKNFGGELIAEGFERSQADSCEFRRK-HLGKIVVIIVVYIDDLLVLSGTKQDE 173
            W+ A++ EID     G W + D P GK  +G K +F  K   DG VE++K R VA  F Q   + YQE                         +QLD++ AFL  D+ EE+Y+E+P G+ +S   NQV +LQK++YGL  +   W   F   ++  G+++ QAD   F +K H GK+V++IV Y+DD++ LSG    E
Sbjct:  290 WKKAIQDEIDALENNGTWTITDLPVGKRPVGCKWIFTIKYKADGSVERFKARLVARGFTQSYGIDYQETFAPVAKLNTIRILLSLDVNQDWCLQQLDIKNAFLNGDLEEEVYMEIPPGFEESMAKNQVCKLQKSLYGLKQSPRAWFDRFTKAVLKLGYKQGQADHTLFVKKSHAGKLVILIV-YVDDII-LSGNDMGE 485          
BLAST of mRNA_P-canaliculata_contig92480.23234.1 vs. uniprot
Match: A5AJR0_VITVI (Integrase catalytic domain-containing protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5AJR0_VITVI)

HSP 1 Score: 119 bits (298), Expect = 5.610e-28
Identity = 71/198 (35.86%), Postives = 106/198 (53.54%), Query Frame = 0
Query:    1 WRGALKREIDGQVARGVWKVVDRPEGKTALGTKAVFKRKVGQDGRVEKYKCRFVAENFRQIKWVHYQEFIG----------------------RQLDVEMAFLEVDITEELYVELPDGYRDS--PNQVGRLQKAMYGLMHAGLLWSKNFGGELIAEGFERSQADSCEFRRK-HLGKIVVIIVVYIDDLLVLSGTKQDE 173
            W+ A++ EID     G W + D P GK  +G K +F  K   DG VE++K R VA  F Q   + YQE                         +QLD++ AFL  D+ EE+Y+E+P G+ +S   NQV +LQK++YGL  +   W   F   ++  G+++ QAD   F +K H GK+ ++IV Y+DD++ LSG   +E
Sbjct:  982 WKKAVQDEIDALEKNGTWTITDLPVGKRPVGCKWIFTIKYKADGSVERFKARLVARGFTQXYGIDYQETFAPVAKLNTIRILLSLAVNQDWCLQQLDIKNAFLNGDLEEEVYMEIPPGFEESMAKNQVCKLQKSLYGLKQSPRAWFDRFTKAVLKLGYKQGQADHTLFVKKSHAGKMAILIV-YVDDII-LSGNDMEE 1177          
BLAST of mRNA_P-canaliculata_contig92480.23234.1 vs. uniprot
Match: A0A438DXD3_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438DXD3_VITVI)

HSP 1 Score: 119 bits (297), Expect = 6.160e-28
Identity = 71/198 (35.86%), Postives = 106/198 (53.54%), Query Frame = 0
Query:    1 WRGALKREIDGQVARGVWKVVDRPEGKTALGTKAVFKRKVGQDGRVEKYKCRFVAENFRQIKWVHYQEFIG----------------------RQLDVEMAFLEVDITEELYVELPDGYRDS--PNQVGRLQKAMYGLMHAGLLWSKNFGGELIAEGFERSQADSCEFRRK-HLGKIVVIIVVYIDDLLVLSGTKQDE 173
            W+ A++ EID     G W + D P GK  +G K +F  K   DG VE++K R VA  F Q   + YQE                         +QLD++ AFL  D+ EE+Y+E+P G+ +S   NQV +LQK++YGL  +   W   F   ++  G+++ QAD   F +K H GK+ ++IV Y+DD++ LSG   +E
Sbjct:  223 WKKAVQDEIDALEKNGTWTITDLPVGKRPVGCKWIFTIKYKADGSVERFKARLVARGFTQSYGIDYQETFAPVAKLNTIRILLSLAVNQDWCLQQLDIKNAFLNGDLEEEVYMEIPPGFEESMAKNQVCKLQKSLYGLKQSPRAWFDRFTKAVLKLGYKQGQADHTLFVKKSHAGKMAILIV-YVDDII-LSGNDMEE 418          
BLAST of mRNA_P-canaliculata_contig92480.23234.1 vs. uniprot
Match: A0A438D5F4_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438D5F4_VITVI)

HSP 1 Score: 119 bits (297), Expect = 6.390e-28
Identity = 71/198 (35.86%), Postives = 106/198 (53.54%), Query Frame = 0
Query:    1 WRGALKREIDGQVARGVWKVVDRPEGKTALGTKAVFKRKVGQDGRVEKYKCRFVAENFRQIKWVHYQEFIG----------------------RQLDVEMAFLEVDITEELYVELPDGYRDS--PNQVGRLQKAMYGLMHAGLLWSKNFGGELIAEGFERSQADSCEFRRK-HLGKIVVIIVVYIDDLLVLSGTKQDE 173
            W+ A++ EID     G W + D P GK  +G K +F  K   DG VE++K R VA  F Q   + YQE                         +QLD++ AFL  D+ EE+Y+E+P G+ +S   NQV +LQK++YGL  +   W   F   ++  G+++ QAD   F +K H GK+ ++IV Y+DD++ LSG   +E
Sbjct:  223 WKKAVQDEIDALEKNGTWTITDLPVGKRPVGCKWIFTIKYKADGSVERFKARLVARGFTQSYGIDYQETFAPVAKLNTIRILLSLAVNQDWCLQQLDIKNAFLNGDLEEEVYMEIPPGFEESMAKNQVCKLQKSLYGLKQSPRAWFDRFTKAVLKLGYKQGQADHTLFVKKSHAGKMAILIV-YVDDII-LSGNDMEE 418          
BLAST of mRNA_P-canaliculata_contig92480.23234.1 vs. uniprot
Match: A0A438KGQ5_VITVI (Copia protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438KGQ5_VITVI)

HSP 1 Score: 119 bits (297), Expect = 7.210e-28
Identity = 71/198 (35.86%), Postives = 106/198 (53.54%), Query Frame = 0
Query:    1 WRGALKREIDGQVARGVWKVVDRPEGKTALGTKAVFKRKVGQDGRVEKYKCRFVAENFRQIKWVHYQEFIG----------------------RQLDVEMAFLEVDITEELYVELPDGYRDS--PNQVGRLQKAMYGLMHAGLLWSKNFGGELIAEGFERSQADSCEFRRK-HLGKIVVIIVVYIDDLLVLSGTKQDE 173
            W+ A++ EID     G W + D P GK  +G K +F  K   DG VE++K R VA  F Q   + YQE                         +QLD++ AFL  D+ EE+Y+E+P G+ +S   NQV +LQK++YGL  +   W   F   ++  G+++ QAD   F +K H GK+ ++IV Y+DD++ LSG   +E
Sbjct:  371 WKKAVQDEIDALEKNGTWTITDLPVGKRPVGCKWIFTIKYKADGSVERFKARLVARGFTQSYGIDYQETFAPVAKLNTIRILLSLAVNQDWCLQQLDIKNAFLNGDLEEEVYMEIPPGFEESMAKNQVCKLQKSLYGLKQSPRAWFDRFTKAVLKLGYKQGQADHTLFVKKSHAGKMAILIV-YVDDII-LSGNDMEE 566          
BLAST of mRNA_P-canaliculata_contig92480.23234.1 vs. uniprot
Match: A0A438GAR1_VITVI (Copia protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GAR1_VITVI)

HSP 1 Score: 119 bits (297), Expect = 7.320e-28
Identity = 71/198 (35.86%), Postives = 106/198 (53.54%), Query Frame = 0
Query:    1 WRGALKREIDGQVARGVWKVVDRPEGKTALGTKAVFKRKVGQDGRVEKYKCRFVAENFRQIKWVHYQEFIG----------------------RQLDVEMAFLEVDITEELYVELPDGYRDS--PNQVGRLQKAMYGLMHAGLLWSKNFGGELIAEGFERSQADSCEFRRK-HLGKIVVIIVVYIDDLLVLSGTKQDE 173
            W+ A++ EID     G W + D P GK  +G K +F  K   DG VE++K R VA  F Q   + YQE                         +QLD++ AFL  D+ EE+Y+E+P G+ +S   NQV +LQK++YGL  +   W   F   ++  G+++ QAD   F +K H GK+ ++IV Y+DD++ LSG   +E
Sbjct:  391 WKKAVQDEIDALEKNGTWTITDLPVGKRPVGCKWIFTIKYKADGSVERFKARLVARGFTQSYGIDYQETFAPVAKLNTIRILLSLAVNQDWCLQQLDIKNAFLNGDLEEEVYMEIPPGFEESMAKNQVCKLQKSLYGLKQSPRAWFDRFTKAVLKLGYKQGQADHTLFVKKSHAGKMAILIV-YVDDII-LSGNDMEE 586          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig92480.23234.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2N9FJC0_FAGSY1.330e-2937.36Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A2N9EWW8_FAGSY6.450e-2937.71Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A2N9FB11_FAGSY8.540e-2937.71Integrase catalytic domain-containing protein n=1 ... [more]
A0A438G0B6_VITVI2.920e-2835.86Retrovirus-related Pol polyprotein from transposon... [more]
A0A438CI09_VITVI3.430e-2836.36Retrovirus-related Pol polyprotein from transposon... [more]
A5AJR0_VITVI5.610e-2835.86Integrase catalytic domain-containing protein n=1 ... [more]
A0A438DXD3_VITVI6.160e-2835.86Retrovirus-related Pol polyprotein from transposon... [more]
A0A438D5F4_VITVI6.390e-2835.86Retrovirus-related Pol polyprotein from transposon... [more]
A0A438KGQ5_VITVI7.210e-2835.86Copia protein n=1 Tax=Vitis vinifera TaxID=29760 R... [more]
A0A438GAR1_VITVI7.320e-2835.86Copia protein n=1 Tax=Vitis vinifera TaxID=29760 R... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 17..69
e-value: 3.6E-8
score: 33.3
coord: 72..168
e-value: 4.8E-19
score: 68.9
NoneNo IPR availablePANTHERPTHR11439:SF287coord: 1..165
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 1..165

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig92480contigP-canaliculata_contig92480:3..588 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig92480.23234.1mRNA_P-canaliculata_contig92480.23234.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig92480 3..588 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig92480.23234.1 ID=prot_P-canaliculata_contig92480.23234.1|Name=mRNA_P-canaliculata_contig92480.23234.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=173bp
WRGALKREIDGQVARGVWKVVDRPEGKTALGTKAVFKRKVGQDGRVEKYK
CRFVAENFRQIKWVHYQEFIGRQLDVEMAFLEVDITEELYVELPDGYRDS
PNQVGRLQKAMYGLMHAGLLWSKNFGGELIAEGFERSQADSCEFRRKHLG
KIVVIIVVYIDDLLVLSGTKQDE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like