prot_P-canaliculata_contig9244.23230.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig9244.23230.1
Unique Nameprot_P-canaliculata_contig9244.23230.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length210
Homology
BLAST of mRNA_P-canaliculata_contig9244.23230.1 vs. uniprot
Match: A0A6H5KSG2_9PHAE (Nucleolar protein 16 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG2_9PHAE)

HSP 1 Score: 170 bits (431), Expect = 1.360e-49
Identity = 83/143 (58.04%), Postives = 109/143 (76.22%), Query Frame = 0
Query:    2 WDNNLTAEANMAKMGLRQDANSDFRPPTAAKVVSDRSTTSGDKLAQDCDVARLFGVMDTDDLRVVDRNPGPRTMSHQNQRYAAKLMARYGMDHEAMARDIKINYNQLTLGKLQRMCNLLLALGDDQRVVDIPQRVLEKASLAS 144
            WD+NLTAE NMAKMGLRQ AN D R P      S      G K+ + C+V+RLF V DT DL+V+DRN G R MS ++QRY AKL++++G+DHEAMARDIK+NYNQLTLG+L+RMC+ LL+L ++QRVV +P+RV  +A+ A+
Sbjct:   40 WDSNLTAETNMAKMGLRQSANRDIRAPARRAAAS---AAPGGKIVESCEVSRLFDVADTADLKVIDRNYGRRPMSDEDQRYMAKLLSKHGLDHEAMARDIKVNYNQLTLGQLRRMCDTLLSLDEEQRVVTLPERVANEAAKAA 179          
BLAST of mRNA_P-canaliculata_contig9244.23230.1 vs. uniprot
Match: D8LSG8_ECTSI (Nucleolar protein 16 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSG8_ECTSI)

HSP 1 Score: 152 bits (385), Expect = 2.680e-43
Identity = 75/133 (56.39%), Postives = 99/133 (74.44%), Query Frame = 0
Query:   12 MAKMGLRQDANSDFRPPTAAKVVSDRSTTSGDKLAQDCDVARLFGVMDTDDLRVVDRNPGPRTMSHQNQRYAAKLMARYGMDHEAMARDIKINYNQLTLGKLQRMCNLLLALGDDQRVVDIPQRVLEKASLAS 144
            MAKMGLRQ AN D R P      S      G K+ + C+V+RLF V DT DL+V+DRN G R MS ++QRY AKL+ ++G+DHEAM RDIK+NYNQLTLG+L+RMC+ LL+LG++QRVV +P+RV  +A+ A+
Sbjct:    1 MAKMGLRQSANRDIRAPARRAAAS---AAPGGKIVESCEVSRLFDVADTADLKVIDRNYGRRPMSDEDQRYMAKLLTKHGLDHEAMTRDIKVNYNQLTLGQLRRMCDTLLSLGEEQRVVTLPERVANEATKAA 130          
BLAST of mRNA_P-canaliculata_contig9244.23230.1 vs. uniprot
Match: A0A1V9ZWA8_9STRA (Nucleolar protein 16 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZWA8_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 2.180e-9
Identity = 47/119 (39.50%), Postives = 61/119 (51.26%), Query Frame = 0
Query:    2 WDNNLTAEANMAKMGLRQDANSDFRPPTAAKVVSDRSTTSGDKLAQDCDVARLFGVMDTDDLRVV-DRNPGPRT--MSHQNQRYAAKLMARYGMDHEAMARDIKINYNQLTLGKLQRMC 117
            WD+NLT   N  K+GL Q+ NS            D+  +  D++    D   LF V D+D L +  +RNP      MS    +Y   L+A+YG D  AMARDIKIN  Q T  KL+R C
Sbjct:   39 WDHNLTTRQNYEKIGLCQNPNS-----------LDQLRSCTDEVI---DPEELFDVPDSDILNLNNERNPKKMDNHMSEMEMQYLRPLVAKYGDDFTAMARDIKINNEQWTAAKLKRRC 143          
BLAST of mRNA_P-canaliculata_contig9244.23230.1 vs. uniprot
Match: A0A067C1M7_SAPPC (Nucleolar protein 16 n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C1M7_SAPPC)

HSP 1 Score: 60.1 bits (144), Expect = 5.850e-8
Identity = 42/120 (35.00%), Postives = 62/120 (51.67%), Query Frame = 0
Query:    1 MWDNNLTAEANMAKMGLRQDANSDFRPPTAAKVVSDRSTTSGDKLAQDCDVARLFGVMDTDDLRVVDRNPGPRTMSHQNQR---YAAKLMARYGMDHEAMARDIKINYNQLTLGKLQRMC 117
            +WD+ LT + N  K+GL +D N+         +   RS T  D +    D   LF V D+D L + D     +  +H ++    Y   L+A++G ++ AMARDIKIN  Q T  KL+R C
Sbjct:   38 VWDHKLTTKQNYEKIGLNRDPNA---------IAQIRSCTE-DLI----DPEELFDVPDSDILNLNDERNYKKAENHMSEMEIAYLRPLLAKFGDNYAAMARDIKINNEQWTESKLKRRC 143          
BLAST of mRNA_P-canaliculata_contig9244.23230.1 vs. uniprot
Match: A0A1V9ZUL6_9STRA (Nucleolar protein 16 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZUL6_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.560e-7
Identity = 43/120 (35.83%), Postives = 60/120 (50.00%), Query Frame = 0
Query:    1 MWDNNLTAEANMAKMGLRQDANSDFRPPTAAKVVSDRSTTSGDKLAQDCDVARLFGVMDTDDLRVVDRNPGPRTMSHQNQR---YAAKLMARYGMDHEAMARDIKINYNQLTLGKLQRMC 117
            +WD+ LT + N  K+GL ++ NS         +   RS T         D   LF V D+D L + +     +  +H ++    Y   L+A+YG DH AMARDIKIN  Q T  KL+R C
Sbjct:   38 VWDHKLTTKQNYEKIGLCRNPNS---------LEQIRSCTE-----DLVDPEELFDVPDSDILNLNNERNLKKADNHMSENEIAYLRPLVAKYGDDHLAMARDIKINNEQWTEAKLKRRC 143          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9244.23230.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KSG2_9PHAE1.360e-4958.04Nucleolar protein 16 n=1 Tax=Ectocarpus sp. CCAP 1... [more]
D8LSG8_ECTSI2.680e-4356.39Nucleolar protein 16 n=1 Tax=Ectocarpus siliculosu... [more]
A0A1V9ZWA8_9STRA2.180e-939.50Nucleolar protein 16 n=1 Tax=Thraustotheca clavata... [more]
A0A067C1M7_SAPPC5.850e-835.00Nucleolar protein 16 n=2 Tax=Saprolegnia TaxID=476... [more]
A0A1V9ZUL6_9STRA1.560e-735.83Nucleolar protein 16 n=1 Tax=Achlya hypogyna TaxID... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019002Ribosome biogenesis protein Nop16PFAMPF09420Nop16coord: 68..118
e-value: 5.0E-10
score: 39.8
IPR019002Ribosome biogenesis protein Nop16PANTHERPTHR13243HSPC111 PROTEIN-RELATEDcoord: 2..134

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig9244contigP-canaliculata_contig9244:8928..11378 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig9244.23230.1mRNA_P-canaliculata_contig9244.23230.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig9244 8659..12061 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig9244.23230.1 ID=prot_P-canaliculata_contig9244.23230.1|Name=mRNA_P-canaliculata_contig9244.23230.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=210bp
MWDNNLTAEANMAKMGLRQDANSDFRPPTAAKVVSDRSTTSGDKLAQDCD
VARLFGVMDTDDLRVVDRNPGPRTMSHQNQRYAAKLMARYGMDHEAMARD
IKINYNQLTLGKLQRMCNLLLALGDDQRVVDIPQRVLEKASLASGDGARV
ENNEDAPVAMEEGEDEEGPQEGVAEISKKSKMKGGKKKEKKRRLSQGSKI
KRSGRLSDG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019002Ribosome_biogenesis_Nop16