prot_P-canaliculata_contig9242.23229.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig9242.23229.1
Unique Nameprot_P-canaliculata_contig9242.23229.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length243
Homology
BLAST of mRNA_P-canaliculata_contig9242.23229.1 vs. uniprot
Match: A0A6H5J939_9PHAE (RRM domain-containing protein (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J939_9PHAE)

HSP 1 Score: 226 bits (577), Expect = 3.790e-71
Identity = 156/215 (72.56%), Postives = 171/215 (79.53%), Query Frame = 0
Query:    1 MLGEEVEQPDAQNKKDSTAPSTD--ASTDGKQLAAXXXXXXXXXXXXXXXFEKAKQEIDGMDD--EENEKLEGLQQIISDSTA--------PPAAXXAAAVDPAKSPDETSVYVGQVDYEATPDELQSHFEACGTINRVTILCDKFSGQPKGYAYIEFTDKDGAENALALDSSPFKGRQLKVTPKRTNVPGMAVRGGRXXXXXXXXXSYYAEPTY 203
            MLGE+VE   A    +  A + D  A  +GK LAAXXXXXXXXXXXXXXXFEKAKQEIDGM+D  +E EKLEGLQQIISDSTA            XX      AKSPDE+SVYVGQVDY+ATPDELQSHFEACGTINRVTILCDKFSG+PKGYAYIEF DKDG+ENALALD+SPFKGR LKVTPKRTNVPG+++RGGR XXXXXX  +Y AEP Y
Sbjct:   14 MLGEDVETT-ADTTGNGAAATGDGAAPAEGKDLAAXXXXXXXXXXXXXXXFEKAKQEIDGMEDPDDEEEKLEGLQQIISDSTAHAXXXXXXXXXXXXXXXXXAAKSPDESSVYVGQVDYDATPDELQSHFEACGTINRVTILCDKFSGRPKGYAYIEFADKDGSENALALDNSPFKGRNLKVTPKRTNVPGLSMRGGRGXXXXXX--AYSAEPAY 225          
BLAST of mRNA_P-canaliculata_contig9242.23229.1 vs. uniprot
Match: A0A7S3XQ96_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQ96_HETAK)

HSP 1 Score: 146 bits (368), Expect = 4.360e-41
Identity = 66/85 (77.65%), Postives = 77/85 (90.59%), Query Frame = 0
Query:   96 DETSVYVGQVDYEATPDELQSHFEACGTINRVTILCDKFSGQPKGYAYIEFTDKDGAENALALDSSPFKGRQLKVTPKRTNVPGM 180
            DETSVYVGQVDYEA+P+ELQ+HF++CGTINRVTILCDKF+G+PKGYAY+EF +K+  ENAL L  S FKGRQLKVTPKR N+PGM
Sbjct:   37 DETSVYVGQVDYEASPEELQAHFQSCGTINRVTILCDKFTGRPKGYAYVEFLEKESVENALLLHDSLFKGRQLKVTPKRHNLPGM 121          
BLAST of mRNA_P-canaliculata_contig9242.23229.1 vs. uniprot
Match: A0A1X2ILT2_9FUNG (RRM domain-containing protein n=1 Tax=Absidia repens TaxID=90262 RepID=A0A1X2ILT2_9FUNG)

HSP 1 Score: 145 bits (366), Expect = 6.190e-40
Identity = 83/121 (68.60%), Postives = 93/121 (76.86%), Query Frame = 0
Query:   96 DETSVYVGQVDYEATPDELQSHFEACGTINRVTILCDKFSGQPKGYAYIEFTDKDGAENALALDSSPFKGRQLKVTPKRTNVPGMAVRGGRXXXXXXXXX-SYYAEPTYRGR----GYRGR 211
            D  SVYVGQVDY ATP+ELQ+HF++CGTINRVTILCDKF+G PKGYAY+EF +     NA+AL+ S F+GR LKVTPKRTNVPG A RGG XXXXXXXX    YA P Y G     GYRGR
Sbjct:   74 DSRSVYVGQVDYGATPEELQAHFQSCGTINRVTILCDKFTGHPKGYAYVEFAEPSFVSNAVALNESLFRGRLLKVTPKRTNVPGFASRGGXXXXXXXXXFRGGYAPPPYYGHSAGYGYRGR 194          
BLAST of mRNA_P-canaliculata_contig9242.23229.1 vs. uniprot
Match: UPI001E1D9E59 (polyadenylate-binding protein 2-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D9E59)

HSP 1 Score: 146 bits (369), Expect = 7.440e-40
Identity = 75/130 (57.69%), Postives = 92/130 (70.77%), Query Frame = 0
Query:   86 AAAVDPAKSPDETSVYVGQVDYEATPDELQSHFEACGTINRVTILCDKFSGQPKGYAYIEFTDKDGAENALALDSSPFKGRQLKVTPKRTNVPGMAVRGGRXXXXXXXXXSYYAEPTYRGRGYRGRGSYR 215
            A+ + P+   D  S+YVG VDY ATP+ELQ+HF  CGTINRVTI+C+K +G PKG+AYIEF D+D  +NA+ L+ SPF+GR LKVTPKRTNVPG+AVRGGR                YRGRG+ GRG  R
Sbjct:  110 ASLIGPSAESDARSIYVGNVDYAATPEELQAHFADCGTINRVTIMCNKATGTPKGFAYIEFVDQDAVKNAVILNESPFRGRALKVTPKRTNVPGLAVRGGRGGRGRGVFG-------YRGRGF-GRGRPR 231          
BLAST of mRNA_P-canaliculata_contig9242.23229.1 vs. uniprot
Match: A0A0L0G953_9EUKA (RRM domain-containing protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0G953_9EUKA)

HSP 1 Score: 144 bits (363), Expect = 6.360e-39
Identity = 74/137 (54.01%), Postives = 94/137 (68.61%), Query Frame = 0
Query:   50 EKAKQEIDGMDDEENEKLEGLQQIISDSTAPPAAXXAAAVDPAKSPDETSVYVGQVDYEATPDELQSHFEACGTINRVTILCDKFSGQPKGYAYIEFTDKDGAENALALDSSPFKGRQLKVTPKRTNVPGMAVRGGR 186
            E  KQ++  M+ EE   L+ +Q  +    A      AA  +P +  D  SVYVG VDY ATP+ELQ HF +CG INR+TI+CD ++GQPKGYAYIEF+DK   +NA  LD S F+GRQ+KV PKRTNVPG+ +RGGR
Sbjct:   68 EAMKQKVKEME-EEXXXLQEMQDQVEKQMA-----VAAPTEPKEDIDARSVYVGNVDYGATPEELQIHFGSCGAINRITIMCDTYTGQPKGYAYIEFSDKSAVDNAQVLDESLFRGRQIKVVPKRTNVPGLKMRGGR 198          
BLAST of mRNA_P-canaliculata_contig9242.23229.1 vs. uniprot
Match: A0A7S2AZN6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AZN6_9STRA)

HSP 1 Score: 139 bits (351), Expect = 4.310e-38
Identity = 80/141 (56.74%), Postives = 102/141 (72.34%), Query Frame = 0
Query:   50 EKAKQEIDGMDDEENEKLEGLQQI----ISDSTAPPAAXXAAAVDPAKSPDETSVYVGQVDYEATPDELQSHFEACGTINRVTILCDKFSGQPKGYAYIEFTDKDGAENALALDSSPFKGRQLKVTPKRTNVPGMAVRGGR 186
            E  K+ +  M+ EE EKL+ LQ+     I+ +TAP +A   AAV    S ++TS+YVGQVDYEA PDELQ+HF +CGTINRVTILC+ F+G+P+GYAY+EF D +  ENAL L+ S FKGR+LKV  KR N PGM  RGG+
Sbjct:   20 EDMKRRVQEME-EEAEKLKELQESVAKEINSNTAPASA---AAVG--GSVEDTSIYVGQVDYEAKPDELQAHFASCGTINRVTILCNPFTGKPRGYAYVEFADVEAVENALLLNDSIFKGRELKVAVKRVNFPGM--RGGK 152          
BLAST of mRNA_P-canaliculata_contig9242.23229.1 vs. uniprot
Match: A0A7S2V693_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V693_9STRA)

HSP 1 Score: 137 bits (346), Expect = 4.330e-38
Identity = 61/85 (71.76%), Postives = 75/85 (88.24%), Query Frame = 0
Query:   96 DETSVYVGQVDYEATPDELQSHFEACGTINRVTILCDKFSGQPKGYAYIEFTDKDGAENALALDSSPFKGRQLKVTPKRTNVPGM 180
            ++ S+YVGQVDYEATP+ELQ+HF +CGTINRVTILC+KF+ +PKGYAYIEF +K+  ENAL L+ S FKGRQLKV+PKR NVPG+
Sbjct:   19 EDNSIYVGQVDYEATPEELQAHFASCGTINRVTILCNKFTSRPKGYAYIEFLEKESVENALLLNESLFKGRQLKVSPKRVNVPGL 103          
BLAST of mRNA_P-canaliculata_contig9242.23229.1 vs. uniprot
Match: A0A4W4E6P9_ELEEL (Poly(A) binding protein nuclear 1 n=30 Tax=Teleostei TaxID=32443 RepID=A0A4W4E6P9_ELEEL)

HSP 1 Score: 141 bits (355), Expect = 8.250e-38
Identity = 77/167 (46.11%), Postives = 99/167 (59.28%), Query Frame = 0
Query:   61 DEENEKLEGLQQIISDS---TAPPAAXXAAAVDPAKSPDETSVYVGQVDYEATPDELQSHFEACGTINRVTILCDKFSGQPKGYAYIEFTDKDGAENALALDSSPFKGRQLKVTPKRTNVPGMAV------------RGGRXXXXXXXXXSYYAEPTYRGRGYRGRG 212
            +EE EKL+ LQ  +      + PPA     +++     D  S+YVG VDY AT +EL++HF  CG++NRVTILCDKF+G PKG+AYIEF DK+    A+ALD S F+GRQ+KV  KRTN PG++             RGG          S Y  P  RGR +RGRG
Sbjct:   58 EEEAEKLKELQNEVEKQMNLSPPPAGPVIMSIEEKIEADGRSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFADKESVRTAMALDESLFRGRQIKVGAKRTNRPGISTTDRGFPRARFRSRGGNFASSRARYYSGYTPPRGRGRAFRGRG 224          
BLAST of mRNA_P-canaliculata_contig9242.23229.1 vs. uniprot
Match: W2HVG4_PHYPR (RRM domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=W2HVG4_PHYPR)

HSP 1 Score: 140 bits (354), Expect = 9.350e-38
Identity = 81/133 (60.90%), Postives = 97/133 (72.93%), Query Frame = 0
Query:   82 AAXXAAAVDPAKSPDETSVYVGQVDYEATPDELQSHFEACGTINRVTILCDKFSGQPKGYAYIEFTDKDGAENALALDSSPFKGRQLKVTPKRTNVPGMAV-RGGRXXXXXXXXXSYYAEPTYRG-RGYRGRG 212
            AA  AA   PA+  D+TS+Y+GQVDY +TP+ELQ+ F++CGTINRVTILCDKF+GQPKGYAYIEF  +D  E+AL L+ + F+GRQLKVTPKR NV G  + RGGR     XXXX     P   G RG RGRG
Sbjct:   89 AAGAAANAQPAQM-DDTSIYIGQVDYGSTPEELQALFQSCGTINRVTILCDKFTGQPKGYAYIEFASRDAVESALLLNDTMFRGRQLKVTPKRQNVRGFNMSRGGRGGRGRXXXXXXXXXPPRGGFRGXRGRG 220          
BLAST of mRNA_P-canaliculata_contig9242.23229.1 vs. uniprot
Match: UPI001CF3B14C (embryonic polyadenylate-binding protein 2 n=1 Tax=Bufo gargarizans TaxID=30331 RepID=UPI001CF3B14C)

HSP 1 Score: 140 bits (352), Expect = 1.010e-37
Identity = 75/156 (48.08%), Postives = 98/156 (62.82%), Query Frame = 0
Query:   61 DEENEKLEGL--QQIISDSTAPPAAXXAAAVDPAKSPDETSVYVGQVDYEATPDELQSHFEACGTINRVTILCDKFSGQPKGYAYIEFTDKDGAENALALDSSPFKGRQLKVTPKRTNVPGMAV--RGGRXXXXXXXXXSYYAEPTYRGRGYRGRG 212
            +EE E+L+GL   +  S+  A          +  +  D+ SVYVG VDY  T  +L+SHF +CG+INR+TILCDKFSG PKGYAYIEF +K  AE A+A+D S F+GR +KV PKRTN+PG++   RGG          ++      RGR YRGRG
Sbjct:   39 EEETERLKGLTGDETKSEENAKAGPPRPLTTEEKREADKRSVYVGNVDYGGTARDLESHFSSCGSINRITILCDKFSGHPKGYAYIEFAEKSSAEAAMAMDESVFRGRTIKVQPKRTNMPGISTTDRGGFRGRPRGLRGNFQRGQRPRGRPYRGRG 194          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9242.23229.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J939_9PHAE3.790e-7172.56RRM domain-containing protein (Fragment) n=2 Tax=E... [more]
A0A7S3XQ96_HETAK4.360e-4177.65Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A1X2ILT2_9FUNG6.190e-4068.60RRM domain-containing protein n=1 Tax=Absidia repe... [more]
UPI001E1D9E597.440e-4057.69polyadenylate-binding protein 2-like n=1 Tax=Merce... [more]
A0A0L0G953_9EUKA6.360e-3954.01RRM domain-containing protein n=1 Tax=Sphaeroforma... [more]
A0A7S2AZN6_9STRA4.310e-3856.74Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2V693_9STRA4.330e-3871.76Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A4W4E6P9_ELEEL8.250e-3846.11Poly(A) binding protein nuclear 1 n=30 Tax=Teleost... [more]
W2HVG4_PHYPR9.350e-3860.90RRM domain-containing protein n=9 Tax=Phytophthora... [more]
UPI001CF3B14C1.010e-3748.08embryonic polyadenylate-binding protein 2 n=1 Tax=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 42..62
NoneNo IPR availablePANTHERPTHR23236EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4Hcoord: 36..209
NoneNo IPR availablePANTHERPTHR23236:SF12POLYADENYLATE-BINDING PROTEIN 2coord: 36..209
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 99..171
e-value: 6.4E-22
score: 88.8
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 100..169
e-value: 1.9E-17
score: 62.8
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 98..175
score: 17.063
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 4..179
e-value: 6.5E-27
score: 96.4
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 79..205

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig9242contigP-canaliculata_contig9242:3039..8889 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig9242.23229.1mRNA_P-canaliculata_contig9242.23229.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig9242 3033..9055 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig9242.23229.1 ID=prot_P-canaliculata_contig9242.23229.1|Name=mRNA_P-canaliculata_contig9242.23229.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=243bp
MLGEEVEQPDAQNKKDSTAPSTDASTDGKQLAAAAAAATVAAADEDDDFE
KAKQEIDGMDDEENEKLEGLQQIISDSTAPPAAPPAAAVDPAKSPDETSV
YVGQVDYEATPDELQSHFEACGTINRVTILCDKFSGQPKGYAYIEFTDKD
GAENALALDSSPFKGRQLKVTPKRTNVPGMAVRGGRGRGRGRGRGSYYAE
PTYRGRGYRGRGSYRGSYRGGGGGGFRGGGYRGGYHPYSSAY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf