prot_P-canaliculata_contig92399.23226.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig92399.23226.1
Unique Nameprot_P-canaliculata_contig92399.23226.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length198
Homology
[Close]
BLAST of mRNA_P-canaliculata_contig92399.23226.1 vs. uniprot
Match: A0A6J7XDN4_9CAUD (Pectate lyase superfamily protein n=1 Tax=uncultured Caudovirales phage TaxID=2100421 RepID=A0A6J7XDN4_9CAUD)

HSP 1 Score: 58.9 bits (141), Expect = 8.560e-7
Identity = 39/131 (29.77%), Postives = 69/131 (52.67%), Query Frame = 0 
Query:   69 IELKHAWSCTLNNIKTVVHATQTPKMSQGIRLFGQSVNNQISNCNIIAEGKAIAIIRENPYVLTPLENTETRRAEGLMITNSFI-SGNYAIYSEGILNLNVSNCVIDLNKEIAILGYHTDHLKLSNNWIAA 198
            I+  + W+  ++ + T+++ T       G+R FGQSVN+ ISN +I A   +        Y +  +++   +  EGL+++N+ + SG Y + S+G L +  SNC IDL  + A    +     + N+WI A
Sbjct:  205 IDYSYTWTSRIDTV-TMLNCTT------GVRYFGQSVNDTISNSSISANSGS--------YCIRTVKDGAVK-GEGLLVSNTLLASGTYGVSSDGFLFMRFSNCTIDLITDTAFDLTNVIDFGVHNSWIYA 319
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig92399.23226.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6J7XDN4_9CAUD8.560e-729.77Pectate lyase superfamily protein n=1 Tax=uncultur... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012334Pectin lyase foldGENE3D2.160.20.10coord: 4..198
e-value: 3.8E-16
score: 60.7
IPR011050Pectin lyase fold/virulence factorSUPERFAMILY51126Pectin lyase-likecoord: 11..196

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig92399contigP-canaliculata_contig92399:3..596 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig92399.23226.1mRNA_P-canaliculata_contig92399.23226.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig92399 3..596 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig92399.23226.1 ID=prot_P-canaliculata_contig92399.23226.1|Name=mRNA_P-canaliculata_contig92399.23226.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=198bp
TVFQPVDCNGFEIKTSNVTIEDLFIYGYSSNTNNYTGIHCELSNQSESQD
RLSNLNFESLKLQNLVVGIELKHAWSCTLNNIKTVVHATQTPKMSQGIRL
FGQSVNNQISNCNIIAEGKAIAIIRENPYVLTPLENTETRRAEGLMITNS
FISGNYAIYSEGILNLNVSNCVIDLNKEIAILGYHTDHLKLSNNWIAA
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012334Pectin_lyas_fold
IPR011050Pectin_lyase_fold/virulence