prot_P-canaliculata_contig9214.23192.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-canaliculata_contig9214.23192.1
Unique Name	prot_P-canaliculata_contig9214.23192.1
Type	polypeptide
Organism	Pelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length	179

Homology

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BLAST of mRNA_P-canaliculata_contig9214.23192.1 vs. uniprot
Match: D7FY98_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY98_ECTSI)

HSP 1 Score: 186 bits (471), Expect = 2.030e-51
Identity = 102/153 (66.67%), Postives = 118/153 (77.12%), Query Frame = 0

Query:   15 SPLPARVHQVMIDVELLGFVYHYGLEVNGITVIQLIMAVGLVVDYTAHIVHYFLHQSPSSSKDAQIANALGEVGPSVMLGAITTFLGIMPMAFASNFVFRVFFKIFILIIVFGFYHGVVFIPVALSFLPSCLVPPR--QKDDISPELSAGSSK 165
             P P      +IDVELLGFVYH+ L+VN ITVI+LIMAVGLVVDY  HIVHYFLHQ PS  KDA+IA ALGE+GPSVM+GA TTFLGIMP+AFA+N +FRVFFK+F++II FGF+HGVVFIPV LS LP  LV     ++D  S E   GS K
Sbjct:  699 DPQPFAYSDAIIDVELLGFVYHWNLDVNSITVIELIMAVGLVVDYMVHIVHYFLHQDPSIPKDARIAEALGEIGPSVMVGAATTFLGIMPLAFANNVIFRVFFKMFLVIISFGFFHGVVFIPVLLSMLPDRLVSQSAPEEDAASVERHTGSKK 851

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BLAST of mRNA_P-canaliculata_contig9214.23192.1 vs. uniprot
Match: A0A6H5JGQ4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGQ4_9PHAE)

HSP 1 Score: 181 bits (459), Expect = 4.800e-51
Identity = 93/125 (74.40%), Postives = 108/125 (86.40%), Query Frame = 0

Query:   23 QVMIDVELLGFVYHYGLEVNGITVIQLIMAVGLVVDYTAHIVHYFLHQSPSSSKDAQIANALGEVGPSVMLGAITTFLGIMPMAFASNFVFRVFFKIFILIIVFGFYHGVVFIPVALSFLPSCLV 147
            +V+IDVELLGFVYH+ L++NGIT I+LIMAVGLVVDY  HIVHYFLHQ PS  KDA+IA ALGE+GPSVM GA TTFLGIMP+AFA+N +FRVFF +F++II FGF+HGVVFIPV LS LP  LV
Sbjct:  399 KVIIDVELLGFVYHWNLDMNGITAIELIMAVGLVVDYMVHIVHYFLHQDPSIPKDARIAEALGEIGPSVMAGAATTFLGIMPLAFANNVIFRVFFNMFLVIISFGFFHGVVFIPVVLSILPDRLV 523

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BLAST of mRNA_P-canaliculata_contig9214.23192.1 vs. uniprot
Match: D7FY89_ECTSI (Novel protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY89_ECTSI)

HSP 1 Score: 181 bits (460), Expect = 8.850e-50
Identity = 94/124 (75.81%), Postives = 108/124 (87.10%), Query Frame = 0

Query:   24 VMIDVELLGFVYHYGLEVNGITVIQLIMAVGLVVDYTAHIVHYFLHQSPSSSKDAQIANALGEVGPSVMLGAITTFLGIMPMAFASNFVFRVFFKIFILIIVFGFYHGVVFIPVALSFLPSCLV 147
            V+IDVELLGFVYH+ L+VN ITVI+LIMAVGLVVDY  HIVHYFLHQ P   KDA+IA ALGE+GPSVM+GA TTFLGIMP+AFA+N +FRVFFK+F++II FGF+HGVVFIPV LS LP  LV
Sbjct:  778 VVIDVELLGFVYHWNLDVNSITVIELIMAVGLVVDYMVHIVHYFLHQDPRIPKDARIAEALGEIGPSVMVGAATTFLGIMPLAFANNVIFRVFFKMFLVIISFGFFHGVVFIPVMLSILPDRLV 901

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BLAST of mRNA_P-canaliculata_contig9214.23192.1 vs. uniprot
Match: D7FY95_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY95_ECTSI)

HSP 1 Score: 181 bits (460), Expect = 9.500e-50
Identity = 93/124 (75.00%), Postives = 109/124 (87.90%), Query Frame = 0

Query:   24 VMIDVELLGFVYHYGLEVNGITVIQLIMAVGLVVDYTAHIVHYFLHQSPSSSKDAQIANALGEVGPSVMLGAITTFLGIMPMAFASNFVFRVFFKIFILIIVFGFYHGVVFIPVALSFLPSCLV 147
            ++IDVELLGFVYH+ L+VN ITVI+LIMAVGLVV+Y  HIVHYFLHQ PS  KDA+IA ALGE+GPSVM+GA TTFLGIMP+AFA+N +FRVFFK+F++II FGF+HGVVFIPV LS LP  LV
Sbjct:  806 IIIDVELLGFVYHWNLDVNSITVIELIMAVGLVVEYMVHIVHYFLHQDPSIPKDARIAEALGEIGPSVMVGAATTFLGIMPLAFANNVIFRVFFKMFLVIISFGFFHGVVFIPVLLSMLPDRLV 929

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BLAST of mRNA_P-canaliculata_contig9214.23192.1 vs. uniprot
Match: D8LCK4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCK4_ECTSI)

HSP 1 Score: 176 bits (446), Expect = 4.950e-48
Identity = 88/124 (70.97%), Postives = 106/124 (85.48%), Query Frame = 0

Query:   24 VMIDVELLGFVYHYGLEVNGITVIQLIMAVGLVVDYTAHIVHYFLHQSPSSSKDAQIANALGEVGPSVMLGAITTFLGIMPMAFASNFVFRVFFKIFILIIVFGFYHGVVFIPVALSFLPSCLV 147
            V++D ELLGFVY YGL+VN ITVIQLIMAVGLVVDY  H+VHYFLHQ P + KD +IA+ALGE+GPS+++GA TTFLGIMP+ FA N +FRVFFK+F++II FGFYHGVVF+PV LS LP  L+
Sbjct:  668 VIVDAELLGFVYLYGLDVNSITVIQLIMAVGLVVDYMVHLVHYFLHQDPRTPKDTRIADALGEIGPSLLMGAGTTFLGIMPLVFAHNVIFRVFFKMFLVIISFGFYHGVVFVPVMLSILPDSLI 791

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BLAST of mRNA_P-canaliculata_contig9214.23192.1 vs. uniprot
Match: A0A6H5L5K0_9PHAE (SSD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5K0_9PHAE)

HSP 1 Score: 158 bits (400), Expect = 7.820e-42
Identity = 81/105 (77.14%), Postives = 94/105 (89.52%), Query Frame = 0

Query:   23 QVMIDVELLGFVYHYGLEVNGITVIQLIMAVGLVVDYTAHIVHYFLHQSPSSSKDAQIANALGEVGPSVMLGAITTFLGIMPMAFASNFVFRVFFKIFILIIVFG 127
            +VMIDVELLGFVYH+ L+VN ITVI+LIMAVGLVVDY  HIVHYFLHQ PS  KDA+IA ALGE+GPSVM+GA TTFLGIMP+AFA+N +FRVFFK+F++II FG
Sbjct:  633 KVMIDVELLGFVYHWNLDVNSITVIELIMAVGLVVDYMVHIVHYFLHQDPSIPKDARIAEALGEIGPSVMVGAATTFLGIMPLAFANNVIFRVFFKMFLVIISFG 737

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BLAST of mRNA_P-canaliculata_contig9214.23192.1 vs. uniprot
Match: D7FY96_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY96_ECTSI)

HSP 1 Score: 145 bits (367), Expect = 2.350e-41
Identity = 74/104 (71.15%), Postives = 90/104 (86.54%), Query Frame = 0

Query:   24 VMIDVELLGFVYHYGLEVNGITVIQLIMAVGLVVDYTAHIVHYFLHQSPSSSKDAQIANALGEVGPSVMLGAITTFLGIMPMAFASNFVFRVFFKIFILIIVFG 127
            V+IDVELLG VYH+ L+V GIT I+LI A+GLVVDY  HIVH+FLHQ PS  KDA+IA ALGE+GPSVM+GA TTFLGI+P+AFA+ F+FRVFFK+F++II FG
Sbjct:   57 VIIDVELLGSVYHWNLDVKGITAIELITALGLVVDYIVHIVHFFLHQDPSIPKDARIAEALGEIGPSVMVGAATTFLGIIPLAFANTFIFRVFFKMFLVIISFG 160

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BLAST of mRNA_P-canaliculata_contig9214.23192.1 vs. uniprot
Match: D7FY88_ECTSI (SSD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY88_ECTSI)

HSP 1 Score: 156 bits (394), Expect = 7.260e-41
Identity = 80/104 (76.92%), Postives = 93/104 (89.42%), Query Frame = 0

Query:   24 VMIDVELLGFVYHYGLEVNGITVIQLIMAVGLVVDYTAHIVHYFLHQSPSSSKDAQIANALGEVGPSVMLGAITTFLGIMPMAFASNFVFRVFFKIFILIIVFG 127
            V+IDVELLGFVYH+ L VN ITVI+LIMAVGLVVDY  HIVHYFLHQ PS  KDA+IA+ALGE+GPSVM+GA TTFLGIMP+AFA+N +FRVFFK+F++II FG
Sbjct:  729 VIIDVELLGFVYHWNLNVNSITVIELIMAVGLVVDYMVHIVHYFLHQDPSIPKDARIADALGEIGPSVMVGAATTFLGIMPLAFANNVIFRVFFKMFLVIISFG 832

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BLAST of mRNA_P-canaliculata_contig9214.23192.1 vs. uniprot
Match: D8LCK9_ECTSI (Similar to Patched domain-containing protein 3, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCK9_ECTSI)

HSP 1 Score: 149 bits (376), Expect = 2.070e-38
Identity = 76/104 (73.08%), Postives = 90/104 (86.54%), Query Frame = 0

Query:   24 VMIDVELLGFVYHYGLEVNGITVIQLIMAVGLVVDYTAHIVHYFLHQSPSSSKDAQIANALGEVGPSVMLGAITTFLGIMPMAFASNFVFRVFFKIFILIIVFG 127
            V+IDVELLGFVYH+ L+VN +TVI+LIMAVGLVVDY  HIVHYFLHQ P   KD +IA+ LGE+GPSV++GA TTFLGI PMAFA+N VFRVFFK+F++II FG
Sbjct:  746 VIIDVELLGFVYHWRLDVNSLTVIELIMAVGLVVDYMVHIVHYFLHQDPDRDKDVRIADGLGEIGPSVVVGAATTFLGITPMAFAANHVFRVFFKMFLIIIGFG 849

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BLAST of mRNA_P-canaliculata_contig9214.23192.1 vs. uniprot
Match: A0A7S2WB03_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WB03_9STRA)

HSP 1 Score: 132 bits (332), Expect = 3.950e-34
Identity = 65/119 (54.62%), Postives = 92/119 (77.31%), Query Frame = 0

Query:   25 MIDVELLGFVYHYGLEVNGITVIQLIMAVGLVVDYTAHIVHYFLHQSPSSSKDAQIANALGEVGPSVMLGAITTFLGIMPMAFASNFVFRVFFKIFILIIVFGFYHGVVFIPVALSFLP 143
            +IDVE++G +Y +GL VN +TV+QL+MAVGLVVDYTAHI+HY+L Q        ++ +AL E+GPSV+LG  TTFLG+MP+AFA + +FR FF++F+ IIV+G  HG++F+P  +  LP
Sbjct:  195 VIDVEIIGTMYFWGLNVNTVTVVQLVMAVGLVVDYTAHILHYYLQQPFHKEPMERLRDALVEIGPSVLLGCFTTFLGVMPLAFAQSVIFRTFFRMFLSIIVYGAAHGLIFLPAIIPSLP 313

The following BLAST results are available for this feature:

BLAST of mRNA_P-canaliculata_contig9214.23192.1 vs. uniprot

BLAST of mRNA_P-canaliculata_contig9214.23192.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FY98_ECTSI	2.030e-51	66.67	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5JGQ4_9PHAE	4.800e-51	74.40	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
D7FY89_ECTSI	8.850e-50	75.81	Novel protein n=1 Tax=Ectocarpus siliculosus TaxID...	[more]
D7FY95_ECTSI	9.500e-50	75.00	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
D8LCK4_ECTSI	4.950e-48	70.97	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5L5K0_9PHAE	7.820e-42	77.14	SSD domain-containing protein n=1 Tax=Ectocarpus s...	[more]
D7FY96_ECTSI	2.350e-41	71.15	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
D7FY88_ECTSI	7.260e-41	76.92	SSD domain-containing protein n=1 Tax=Ectocarpus s...	[more]
D8LCK9_ECTSI	2.070e-38	73.08	Similar to Patched domain-containing protein 3, pa...	[more]
A0A7S2WB03_9STRA	3.950e-34	54.62	Hypothetical protein n=1 Tax=Rhizochromulina marin...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.20.1640.10		coord: 21..153 e-value: 1.4E-12 score: 49.3
None	No IPR available	PANTHER	PTHR10796:SF92	PATCHED-RELATED, ISOFORM A	coord: 24..156
None	No IPR available	PANTHER	PTHR10796	PATCHED-RELATED	coord: 24..156
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 114..118
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 46..68
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 69..88
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 89..113
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 143..178
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..45
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 119..142
None	No IPR available	SUPERFAMILY	82866	Multidrug efflux transporter AcrB transmembrane domain	coord: 28..142
None	No IPR available	TMHMM	TMhelix		coord: 30..52
None	No IPR available	TMHMM	TMhelix		coord: 91..113
None	No IPR available	TMHMM	TMhelix		coord: 120..142
IPR003392	Protein patched/dispatched	PFAM	PF02460	Patched	coord: 24..142 e-value: 8.2E-24 score: 83.7
IPR000731	Sterol-sensing domain	PROSITE	PS50156	SSD	coord: 31..141 score: 11.874

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-canaliculata_contig9214	contig	P-canaliculata_contig9214:3022..5476 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Pelvetia canaliculata dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-canaliculata_contig9214.23192.1	mRNA_P-canaliculata_contig9214.23192.1	Pelvetia canaliculata dioecious	mRNA	P-canaliculata_contig9214 2249..6793 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-canaliculata_contig9214.23192.1 ID=prot_P-canaliculata_contig9214.23192.1|Name=mRNA_P-canaliculata_contig9214.23192.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=179bp
MLLGFENNMKLYIASPLPARVHQVMIDVELLGFVYHYGLEVNGITVIQLI
MAVGLVVDYTAHIVHYFLHQSPSSSKDAQIANALGEVGPSVMLGAITTFL
GIMPMAFASNFVFRVFFKIFILIIVFGFYHGVVFIPVALSFLPSCLVPPR
QKDDISPELSAGSSKSQENSETRNSVEG*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR003392	Ptc/Disp
IPR000731	SSD