prot_P-canaliculata_contig9204.23183.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig9204.23183.1
Unique Nameprot_P-canaliculata_contig9204.23183.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length698
Homology
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BLAST of mRNA_P-canaliculata_contig9204.23183.1 vs. uniprot
Match: D8LM19_ECTSI (Hypothetical leucine-rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM19_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 1.080e-16
Identity = 44/53 (83.02%), Postives = 50/53 (94.34%), Query Frame = 0 
Query:  189 LSEAPPIVGGKGLRQWQVAQRKAFLNGWSMMERLTFLELENAQLRKENDLLKK 241
            LSE+PPIVGGKGLRQWQV+QRKAFLN WSM++RL+ LE ENAQLRKENDLL+K
Sbjct:  339 LSESPPIVGGKGLRQWQVSQRKAFLNSWSMVDRLSHLETENAQLRKENDLLRK 391
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BLAST of mRNA_P-canaliculata_contig9204.23183.1 vs. uniprot
Match: A0A6H5KS56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS56_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 4.380e-16
Identity = 44/56 (78.57%), Postives = 51/56 (91.07%), Query Frame = 0 
Query:  189 LSEAPPIVGGKGLRQWQVAQRKAFLNGWSMMERLTFLELENAQLRKENDLLKKRCS 244
            LSE+PP+VGGKGLRQWQV+QRKAFLN WSM++RL+ LE ENAQLRKENDLL+K  S
Sbjct:  349 LSESPPVVGGKGLRQWQVSQRKAFLNSWSMVDRLSHLEAENAQLRKENDLLRKSIS 404
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9204.23183.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LM19_ECTSI1.080e-1683.02Hypothetical leucine-rich repeat protein n=1 Tax=E... [more]
A0A6H5KS56_9PHAE4.380e-1678.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 222..242
NoneNo IPR availablePANTHERPTHR46662:SF8coord: 1..98
NoneNo IPR availablePANTHERPTHR46662FAMILY NOT NAMEDcoord: 1..98
NoneNo IPR availablePANTHERPTHR46662:SF8coord: 97..192
coord: 59..146
NoneNo IPR availablePANTHERPTHR46662FAMILY NOT NAMEDcoord: 97..192
coord: 59..146
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 2..232
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 8..31
e-value: 150.0
score: 3.6
coord: 176..199
e-value: 79.0
score: 5.9
coord: 32..55
e-value: 89.0
score: 5.5
coord: 128..152
e-value: 35.0
score: 8.8
coord: 104..127
e-value: 73.0
score: 6.2
coord: 56..80
e-value: 23.0
score: 10.3
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 1..98
e-value: 7.3E-30
score: 105.7
coord: 99..212
e-value: 1.6E-26
score: 94.8
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 33..93
e-value: 1.3E-7
score: 31.2

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig9204contigP-canaliculata_contig9204:3436..11374 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig9204.23183.1mRNA_P-canaliculata_contig9204.23183.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig9204 1830..11980 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig9204.23183.1 ID=prot_P-canaliculata_contig9204.23183.1|Name=mRNA_P-canaliculata_contig9204.23183.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=698bp
MPPQLGQLTCLRHLFLNNNDLRGPIPDELSKLSHLEQLFLGDNHLEGPIP
ASFSALLRLEELVLSGNQLNGHVPAELGELTALTRLELDSNKFAGDIPHG
LCALSNLKILYLNNNNLSGPVPTELGMLSWLERLDLSENNLTGSIPTELG
QLFSLQLLRLNNNRLVGGIPCELGRLHHINLLLLDGNQLSEAPPIVGGKG
LRQWQVAQRKAFLNGWSMMERLTFLELENAQLRKENDLLKKRCSVFLDRD
SPRPSSHTSESPLPNSPHPVFLSPTPLSPVHSSPISSFRSPALAVPNVEP
VHVDPSATSLVPAEGALGPPHCIPSSPIGAPSKLSALSSLLSQDSEPSIA
SLPPLTPREATVKSRAVASACTKPIIAAGSDTVAATGPGEDLATRADKNV
KVAARPSPRDSSKVGPPATAVKALRSRRTLSFREQDGHYADKGSNSGQMF
STLGRPSSGAQSANGEGVPELAQGSGSVAEAFTRRLRSRVRHGVAAAHVV
CDHDGGYRSVEENGKAEGGKGSSEEGVISVKGCCPSTAPLSLVHHQDGSE
STGSASSSAASPGASQEEADKDGGRTPSYGRSWASLVGITPPGADNGVGA
FLVGGQSGASRGRNYGENVTGGDKGVVSPEGRGSPIPMQSPLSQMVMGLF
RVGSSENNAVGAFRSANNGSPASPAKRDVKASSLSNVGVLSEIASPE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt