prot_P-canaliculata_contig9140.23102.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig9140.23102.1
Unique Nameprot_P-canaliculata_contig9140.23102.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length585
Homology
BLAST of mRNA_P-canaliculata_contig9140.23102.1 vs. uniprot
Match: D7FIX0_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIX0_ECTSI)

HSP 1 Score: 417 bits (1073), Expect = 1.690e-129
Identity = 258/590 (43.73%), Postives = 334/590 (56.61%), Query Frame = 0
Query:    1 RFLVLEQSVVLVYASDEDWEQHREPIDCIALSTDSTIETSEEAGETLVRLGCPDHKPFTFNAISYGTGALT----SVLWNDTLAREIARL-------RRGVTGPETSLERNTKTWRLWRVSGANVEDRSNRA-SSIVSSSAGDLVSQDRTFRP------LKPVAAASERRRTSPNDGLEGAEGLAERTTRAQ---------RVVEEERQD---VDKPLERGHGGDAY--RGKSNDGGTLKGSGSSGSGGFRRWPLLRGSPTRTLPDYGDEPKCDGRRANAGGASDEKTTCFTAGSDDRDEKNLVDMRGALYNKAGEAFRVKRGMDCDCKWCRVLGSRRVPWTKKWAFSTSKTSAVISRWENLVGRWTALQLARSGDTPGIQEFLREFPHFPDKANLLRAAVRYKQYSVVQYLLDEQHMDVNLVNSIGIPLVWFSVLNAQKGDSGVMLRYLLQKGADIKAKSKLGQNVLFMVAFSRGKEAIPTLKYLVEEYGLSLTERDNFGSEPIHWAVLHGHLDTVQWISRHTRFRFTRANWAGVFQKMESVRLVKREHLGAVKSWRIRGLQKSARSLTPLGVAVLHNHEGIAKWLMGY 558
            RFLVL+ +V+LVYAS  DW  H+EP+D + LS +S +ET+ E    LV+L  P H P  F   +      T    S  W   +++EIA L       RR  T       R  ++WRLW     + E  S +A +++++  AG   S D T +        K                      L+ R  R +         +V ++E      V   +  G G  A   RG+  +G  +    S  S     W  + G     +    D   C       GG+  +                         +++G  +R       +C W R         +KK A   +K S V+ RWE LVGRW  LQ+ARSGD  G++ FL +FP FPDK NLLRAAVRYKQYS+V+YLL+EQHMDVNL N++G+P+VWFSV   Q+GDSGVMLRYLLQKGADI  KS++GQ +LF++  SRGKEAIP LKYLVEE GLSLTE+D+FGS+P+HWAVLHGHLDTV+WIS +T++  TRANWA  F+KM+ +RLVK EH+GA +SWRIRGLQKSARSLTPLGVAVLHNHE IA+WLMGY
Sbjct:   15 RFLVLDHAVLLVYASKSDWADHQEPLDDVVLSAESVVETTREREGALVKLRGPGHSPLCFTCSAVNVNDSTTRPDSEAWEVAISQEIAGLGGDAGTSRRPHTVAAARGGRGVRSWRLWNAVRRDAEGNSGKAGAALIADPAGGGGSVDATEKDGSNHDETKHXXXXXXXXXXXXXXXXXXXARLSSRGFRRRPLKRSDTTCKVSDQESASSLVVAPVVTEGQGKPATGGRGEGGEGNPI----SDSSRASNLWRRVAG-----VVRQNDRAICTSEPGKNGGSGSQH-----------------------LSESGNKYRR------ECSWAR---------SKKRASVQAKLSPVVDRWEYLVGRWIPLQMARSGDVLGVRSFLEKFPAFPDKDNLLRAAVRYKQYSLVEYLLEEQHMDVNLKNAMGMPVVWFSVAFMQRGDSGVMLRYLLQKGADIHIKSRVGQTMLFLLVSSRGKEAIPMLKYLVEELGLSLTEKDDFGSQPLHWAVLHGHLDTVRWISEYTKYPATRANWAKAFEKMQKIRLVKPEHMGAARSWRIRGLQKSARSLTPLGVAVLHNHEHIARWLMGY 557          
BLAST of mRNA_P-canaliculata_contig9140.23102.1 vs. uniprot
Match: A0A6H5K0W6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0W6_9PHAE)

HSP 1 Score: 375 bits (964), Expect = 1.480e-113
Identity = 182/264 (68.94%), Postives = 214/264 (81.06%), Query Frame = 0
Query:  295 DCKWCRVLGSRRVPWTKKWAFSTSKTSAVISRWENLVGRWTALQLARSGDTPGIQEFLREFPHFPDKANLLRAAVRYKQYSVVQYLLDEQHMDVNLVNSIGIPLVWFSVLNAQKGDSGVMLRYLLQKGADIKAKSKLGQNVLFMVAFSRGKEAIPTLKYLVEEYGLSLTERDNFGSEPIHWAVLHGHLDTVQWISRHTRFRFTRANWAGVFQKMESVRLVKREHLGAVKSWRIRGLQKSARSLTPLGVAVLHNHEGIAKWLMGY 558
            +C W R         +KK     +K S V+ RWE LVGRW  LQ+ARSGD  G++ FL +FP FPDK NLLRAAVRYKQYS+V+YLL+EQHMDVNL N +G+PLVWFSV   Q+GDSGVMLRYLLQKGADI  KS++GQ VLF++  SRGKEAIP LKYLVEE GLSLTE+D FGS+P+HWAVL+GHLDTV+WIS +T++  TRANWA  F+KM+ +RLV+ EH+GA +SWRIRGLQKSARSLTPLGVAVLHNHE IAKWLMGY
Sbjct:  254 ECSWAR---------SKKRTSVYAKLSPVVDRWEYLVGRWIPLQMARSGDVHGVRSFLEKFPAFPDKDNLLRAAVRYKQYSLVEYLLEEQHMDVNLKNVMGMPLVWFSVAFMQRGDSGVMLRYLLQKGADIHIKSRVGQTVLFLLVSSRGKEAIPMLKYLVEELGLSLTEKDEFGSQPLHWAVLYGHLDTVRWISEYTKYPATRANWAKAFEKMQDIRLVQPEHMGAARSWRIRGLQKSARSLTPLGVAVLHNHEHIAKWLMGY 508          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9140.23102.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FIX0_ECTSI1.690e-12943.73Ankyrin Repeat Transient Receptor Potential Channe... [more]
A0A6H5K0W6_9PHAE1.480e-11368.94Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002110Ankyrin repeatSMARTSM00248ANK_2acoord: 468..498
e-value: 12.0
score: 14.8
coord: 394..427
e-value: 1300.0
score: 4.1
coord: 535..567
e-value: 700.0
score: 6.1
coord: 360..390
e-value: 100.0
score: 11.7
IPR036770Ankyrin repeat-containing domain superfamilyGENE3D1.25.40.20coord: 314..571
e-value: 1.3E-23
score: 85.7
IPR036770Ankyrin repeat-containing domain superfamilySUPERFAMILY48403Ankyrin repeatcoord: 333..558
IPR020683Ankyrin repeat-containing domainPFAMPF12796Ank_2coord: 407..489
e-value: 7.0E-8
score: 32.9
IPR020683Ankyrin repeat-containing domainPROSITEPS50297ANK_REP_REGIONcoord: 360..488
score: 15.486
NoneNo IPR availablePANTHERPTHR24126:SF8ANKYRIN REPEAT, PH AND SEC7 DOMAIN CONTAINING PROTEIN SECGcoord: 345..486
NoneNo IPR availablePANTHERPTHR24126FAMILY NOT NAMEDcoord: 345..486

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig9140contigP-canaliculata_contig9140:916..8978 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig9140.23102.1mRNA_P-canaliculata_contig9140.23102.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig9140 916..8980 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig9140.23102.1 ID=prot_P-canaliculata_contig9140.23102.1|Name=mRNA_P-canaliculata_contig9140.23102.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=585bp
RFLVLEQSVVLVYASDEDWEQHREPIDCIALSTDSTIETSEEAGETLVRL
GCPDHKPFTFNAISYGTGALTSVLWNDTLAREIARLRRGVTGPETSLERN
TKTWRLWRVSGANVEDRSNRASSIVSSSAGDLVSQDRTFRPLKPVAAASE
RRRTSPNDGLEGAEGLAERTTRAQRVVEEERQDVDKPLERGHGGDAYRGK
SNDGGTLKGSGSSGSGGFRRWPLLRGSPTRTLPDYGDEPKCDGRRANAGG
ASDEKTTCFTAGSDDRDEKNLVDMRGALYNKAGEAFRVKRGMDCDCKWCR
VLGSRRVPWTKKWAFSTSKTSAVISRWENLVGRWTALQLARSGDTPGIQE
FLREFPHFPDKANLLRAAVRYKQYSVVQYLLDEQHMDVNLVNSIGIPLVW
FSVLNAQKGDSGVMLRYLLQKGADIKAKSKLGQNVLFMVAFSRGKEAIPT
LKYLVEEYGLSLTERDNFGSEPIHWAVLHGHLDTVQWISRHTRFRFTRAN
WAGVFQKMESVRLVKREHLGAVKSWRIRGLQKSARSLTPLGVAVLHNHEG
IAKWLMGYCRGSMWRTSFPDPPGTRMASGRGHPRD
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002110Ankyrin_rpt
IPR036770Ankyrin_rpt-contain_sf
IPR020683Ankyrin_rpt-contain_dom