prot_P-canaliculata_contig91236.23085.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig91236.23085.1
Unique Nameprot_P-canaliculata_contig91236.23085.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length298
Homology
BLAST of mRNA_P-canaliculata_contig91236.23085.1 vs. uniprot
Match: A0A518D1B5_9BACT (Nickel uptake substrate-specific transmembrane region n=1 Tax=Planctomycetes bacterium Pla163 TaxID=2528008 RepID=A0A518D1B5_9BACT)

HSP 1 Score: 152 bits (385), Expect = 5.350e-38
Identity = 101/281 (35.94%), Postives = 143/281 (50.89%), Query Frame = 0
Query:    1 DGTPAANVRLRVEGERVYEAEARWNHPPTWEWKMRIDALRTAADGRFLFKQLGSGSYKIYAYDPADKKRQVTTVALAGGDPVEIVMNPDAMNGRTLEGFVKNAATGDPITDFRATPMIGNFGEYNDFRSDSGRFLLTGLKDGPIQLTVSADGFAATKLPMRDYTGDEAPVEVELWPSAALRFRVVDGDGELRTELCKVRVMDSSGAELMLPLGGGSTSNSY--RTSEPGRGRIFDLPATLVTV-EVACGQESEEFLLDLSVTGEEEIEFMLTPAPKKPTGP 278
            DGTP A   + +EG    +     +   TWE+   I  + T  DGRF F +L  G + ++A  P D +R V     AG D + + ++ +A++   L G V +  TG PI  FR  P +G  G + D     GRF + GL  GPI++++SADGFA   L  R++   E  ++V+L P+  L  RV + DGE  T+  +VRV+DSSGAELMLP G    S+S   R  E G   +  LPA  VTV   A         +DL+     E+   L   P +P  P
Sbjct:  396 DGTPVAGAEVWIEGTNEVDPGYVTSRRTTWEYMAGIADIETDTDGRFAFDRLYGGLWTVHASFP-DDRRTVDVETRAGVDDLVVRLDREALDKVVLAGRVTDGLTGAPIPSFRVVPFVGGMGRFYDVEDSDGRFRVAGLPPGPIRVSISADGFANGSLGERNFALGEHLLDVQLLPTRELVLRVTE-DGEHPTDSVQVRVLDSSGAELMLPTGDSGRSSSVWLRGGETG---LRGLPAARVTVIATASDGRVARAAIDLAADVLHELTLDLEAKPVEPQEP 671          
BLAST of mRNA_P-canaliculata_contig91236.23085.1 vs. uniprot
Match: W4M9R7_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Candidatus Entotheonella gemina TaxID=1429439 RepID=W4M9R7_9BACT)

HSP 1 Score: 55.8 bits (133), Expect = 3.810e-5
Identity = 36/121 (29.75%), Postives = 58/121 (47.93%), Query Frame = 0
Query:   38 ALRTAADGRFLFKQLGSGSYKIYAYDPADKKRQVTTVALAGGD-----PVEIVMNPDAMNGRTLEGFVKNAATGDPITDFRATPMIGNFGEYNDFRSDSGRFLLTGLKDGPIQLTVSADGF 153
            +  T  DGRF F  L SG+Y++ + D  +     TT  L  G       + ++   DA    T++G V  AATG P+       +    G  +   ++ GR+ ++ +  GP+QLT S DG+
Sbjct:  313 SFTTGNDGRFAFSGLPSGAYQL-SLDLVNYAPLSTTTTLPRGGLLNLGDLRLLKEVDATTTATVQGLVTEAATGQPLAG-----VTIRTGSQSATSTEDGRYQISNVVPGPLQLTASLDGY 427          
BLAST of mRNA_P-canaliculata_contig91236.23085.1 vs. uniprot
Match: A6G889_9DELT (PDZ domain protein n=2 Tax=Plesiocystis pacifica TaxID=191768 RepID=A6G889_9DELT)

HSP 1 Score: 55.5 bits (132), Expect = 6.560e-5
Identity = 54/205 (26.34%), Postives = 85/205 (41.46%), Query Frame = 0
Query:   41 TAADGRFLFKQLGSGSYKIYA----YDPADKKRQVTTVALAGGDPVEIVMNPDAMNGRTLEGFVKNAATGDPITDFRATPMIGNFGEYNDFRSDSGRFLLTGLKDGPIQLTVSADGFAATKLPMRDYTGDEAPVEVELWPSAALRFRVVDGDGELRTELCKVRVMDSSGAELMLPLGGGSTSNSYRTSEPGRGRIFDLPATLVTV 241
            T A GR+ F++LG G  ++      + PAD          A   P E ++      G T++  V++A  G+ +   RA       G       ++GR  LTGL    +++ +SA G+ A ++ +RD       + VEL+   AL   V D  G+             SGA +      G      ++   GR RI  +PA  V V
Sbjct:  650 TDAKGRYEFEELGPGGVELMFSHPDFVPAD----------ARSTPDEGLVEQVLDAGWTIDLLVRSAVAGEALEGVRAQA-----GHVEGSTDEAGRVELTGLVGEAVEVELSAPGWLAQQVRVRDDGSGRVELTVELFDGGALEGTVDDDIGD-----------PVSGARVQAMTASGELLGEAKSDNRGRWRIDGVPAGDVVV 828          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig91236.23085.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A518D1B5_9BACT5.350e-3835.94Nickel uptake substrate-specific transmembrane reg... [more]
W4M9R7_9BACT3.810e-529.75Uncharacterized protein (Fragment) n=1 Tax=Candida... [more]
A6G889_9DELT6.560e-526.34PDZ domain protein n=2 Tax=Plesiocystis pacifica T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig91236contigP-canaliculata_contig91236:4..897 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig91236.23085.1mRNA_P-canaliculata_contig91236.23085.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig91236 4..897 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig91236.23085.1 ID=prot_P-canaliculata_contig91236.23085.1|Name=mRNA_P-canaliculata_contig91236.23085.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=298bp
DGTPAANVRLRVEGERVYEAEARWNHPPTWEWKMRIDALRTAADGRFLFK
QLGSGSYKIYAYDPADKKRQVTTVALAGGDPVEIVMNPDAMNGRTLEGFV
KNAATGDPITDFRATPMIGNFGEYNDFRSDSGRFLLTGLKDGPIQLTVSA
DGFAATKLPMRDYTGDEAPVEVELWPSAALRFRVVDGDGELRTELCKVRV
MDSSGAELMLPLGGGSTSNSYRTSEPGRGRIFDLPATLVTVEVACGQESE
EFLLDLSVTGEEEIEFMLTPAPKKPTGPINLLVAYLPGLDPADARDAF
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