prot_P-canaliculata_contig9.22911.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig9.22911.1
Unique Nameprot_P-canaliculata_contig9.22911.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length118
Homology
BLAST of mRNA_P-canaliculata_contig9.22911.1 vs. uniprot
Match: A0A6H0Y1K6_9PEZI (U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=Peltaster fructicola TaxID=286661 RepID=A0A6H0Y1K6_9PEZI)

HSP 1 Score: 171 bits (432), Expect = 2.570e-52
Identity = 82/101 (81.19%), Postives = 88/101 (87.13%), Query Frame = 0
Query:   13 MLPLGLLNAAQGHPMLVELKNGETINGHLLKCDNYMNLTLKEVVQTSPDGDKFFRLPECYVRGNNIKYLRVPDEIIEAASRQQQEXXXQRGGRGGSHQRGD 113
            MLPLGLL AAQGHPMLVELKNGET+NGHL++CD YMNLTLKEVVQTSPDG+KFFRLPECYVRG+NIKYLRVPDEI +    QQQ    QR GRGGS QRGD
Sbjct:    1 MLPLGLLTAAQGHPMLVELKNGETLNGHLVQCDTYMNLTLKEVVQTSPDGEKFFRLPECYVRGSNIKYLRVPDEIADTVKEQQQAQQSQRSGRGGSQQRGD 101          
BLAST of mRNA_P-canaliculata_contig9.22911.1 vs. uniprot
Match: A0A165I2W2_XYLHT (U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=Xylona heveae (strain CBS 132557 / TC161) TaxID=1328760 RepID=A0A165I2W2_XYLHT)

HSP 1 Score: 165 bits (417), Expect = 1.690e-50
Identity = 81/106 (76.42%), Postives = 90/106 (84.91%), Query Frame = 0
Query:   13 MLPLGLLNAAQGHPMLVELKNGETINGHLLKCDNYMNLTLKEVVQTSPDGDKFFRLPECYVRGNNIKYLRVPDEIIEAASRQQQEXXXQRGGRGGSHQRGDFGGRG 118
            MLPLGLL AAQGHPMLVELKNGET+NGHL+ CD +MNLTLKEVVQTSP+GDKFFRLPE YVRGNNIKYLR+PDEI++   ++QQ     RGGRGG  QRGD  GRG
Sbjct:    1 MLPLGLLTAAQGHPMLVELKNGETLNGHLVNCDTWMNLTLKEVVQTSPEGDKFFRLPEAYVRGNNIKYLRIPDEILDVV-KEQQAQQASRGGRGGGQQRGDHAGRG 105          
BLAST of mRNA_P-canaliculata_contig9.22911.1 vs. uniprot
Match: A0A3E2GTX6_SCYLI (U6 snRNA-associated Sm-like protein LSm4 (Fragment) n=2 Tax=Leotiomycetes TaxID=147548 RepID=A0A3E2GTX6_SCYLI)

HSP 1 Score: 164 bits (414), Expect = 3.220e-50
Identity = 83/107 (77.57%), Postives = 89/107 (83.18%), Query Frame = 0
Query:   13 MLPLGLLNAAQGHPMLVELKNGETINGHLLKCDNYMNLTLKEVVQTSPDGDKFFRLPECYVRGNNIKYLRVPDEIIEAASRQQQ-EXXXQRGGRGGSHQRGDFGGRG 118
            MLPLGLL AAQGHPMLVELKNGET+NGHL+ CD +MNLTLKEVVQTSPDGDKFFRLPE YV+GNNIKYLRVPDEII+    Q Q +    RG RGGS QRGD  GRG
Sbjct:    1 MLPLGLLTAAQGHPMLVELKNGETLNGHLVTCDTWMNLTLKEVVQTSPDGDKFFRLPEVYVKGNNIKYLRVPDEIIDLVKEQHQGQQSSYRGSRGGSQQRGDHSGRG 107          
BLAST of mRNA_P-canaliculata_contig9.22911.1 vs. uniprot
Match: A0A8H3F1R4_9LECA (U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=Gomphillus americanus TaxID=1940652 RepID=A0A8H3F1R4_9LECA)

HSP 1 Score: 162 bits (409), Expect = 2.540e-49
Identity = 79/102 (77.45%), Postives = 86/102 (84.31%), Query Frame = 0
Query:   13 MLPLGLLNAAQGHPMLVELKNGETINGHLLKCDNYMNLTLKEVVQTSPDGDKFFRLPECYVRGNNIKYLRVPDEIIEAASRQQQEXXXQRGGRGGSHQRGDF 114
            MLPL LLNAAQGHPMLVELKNGET+NGHL+ CD +MNLTLKEVVQTSP+GD+F+RLPE YVRGNNIKYLRVPDEII+    QQQ     RG RGG H RGDF
Sbjct:    1 MLPLSLLNAAQGHPMLVELKNGETLNGHLVNCDTWMNLTLKEVVQTSPEGDRFWRLPEAYVRGNNIKYLRVPDEIIDIVKEQQQNQPSHRGARGGGH-RGDF 101          
BLAST of mRNA_P-canaliculata_contig9.22911.1 vs. uniprot
Match: M3B9N3_PSEFD (U6 snRNA-associated Sm-like protein LSm4 (Fragment) n=5 Tax=Mycosphaerellaceae TaxID=93133 RepID=M3B9N3_PSEFD)

HSP 1 Score: 162 bits (409), Expect = 2.790e-49
Identity = 76/97 (78.35%), Postives = 84/97 (86.60%), Query Frame = 0
Query:   14 LPLGLLNAAQGHPMLVELKNGETINGHLLKCDNYMNLTLKEVVQTSPDGDKFFRLPECYVRGNNIKYLRVPDEIIEAASRQQQEXXXQRGGRGGSHQ 110
            LPLGLL+AAQGHPMLVELK GET+NGHL+ CD YMNLTLKEVVQTSP+GDKFFRL ECYVRGNNIKYLRVPDE+++A   QQ +   QRGGRGG  Q
Sbjct:    2 LPLGLLHAAQGHPMLVELKTGETLNGHLVSCDTYMNLTLKEVVQTSPEGDKFFRLAECYVRGNNIKYLRVPDEVVDAVKEQQAQQQSQRGGRGGMQQ 98          
BLAST of mRNA_P-canaliculata_contig9.22911.1 vs. uniprot
Match: A0A6A6PI97_9PEZI (U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=Neohortaea acidophila TaxID=245834 RepID=A0A6A6PI97_9PEZI)

HSP 1 Score: 160 bits (405), Expect = 1.170e-48
Identity = 74/84 (88.10%), Postives = 78/84 (92.86%), Query Frame = 0
Query:   13 MLPLGLLNAAQGHPMLVELKNGETINGHLLKCDNYMNLTLKEVVQTSPDGDKFFRLPECYVRGNNIKYLRVPDEIIEAASRQQQ 96
            MLPLGLLNAAQGHPMLVELKNGET+NGHL+ CD YMNLTLKEVVQTSPDGDKFFRLPECYVRGNNIKYLRVPDEI++    QQQ
Sbjct:    1 MLPLGLLNAAQGHPMLVELKNGETLNGHLVNCDTYMNLTLKEVVQTSPDGDKFFRLPECYVRGNNIKYLRVPDEIVDLVKDQQQ 84          
BLAST of mRNA_P-canaliculata_contig9.22911.1 vs. uniprot
Match: A0A8H4ILH5_9PEZI (Protein-tyrosine phosphatase receptor/non-receptor type n=2 Tax=Botryosphaeria dothidea TaxID=55169 RepID=A0A8H4ILH5_9PEZI)

HSP 1 Score: 174 bits (442), Expect = 2.820e-48
Identity = 83/101 (82.18%), Postives = 90/101 (89.11%), Query Frame = 0
Query:   13 MLPLGLLNAAQGHPMLVELKNGETINGHLLKCDNYMNLTLKEVVQTSPDGDKFFRLPECYVRGNNIKYLRVPDEIIEAASRQQQEXXXQRGGRGGSHQRGD 113
            MLPLGLLNAAQGHPMLVELKNGET+NGHL+ CDN+MNLTLKEVVQTSPDGD+F+RLPE Y+RGNNIKYLRVPDEII+    QQQ     RGGRGGSHQRGD
Sbjct:    1 MLPLGLLNAAQGHPMLVELKNGETLNGHLVNCDNWMNLTLKEVVQTSPDGDRFWRLPEVYIRGNNIKYLRVPDEIIDLVKEQQQRDQANRGGRGGSHQRGD 101          
BLAST of mRNA_P-canaliculata_contig9.22911.1 vs. uniprot
Match: B8MLJ3_TALSN (U6 snRNA-associated Sm-like protein LSm4 n=4 Tax=Eurotiales TaxID=5042 RepID=B8MLJ3_TALSN)

HSP 1 Score: 158 bits (399), Expect = 7.250e-48
Identity = 74/95 (77.89%), Postives = 83/95 (87.37%), Query Frame = 0
Query:   13 MLPLGLLNAAQGHPMLVELKNGETINGHLLKCDNYMNLTLKEVVQTSPDGDKFFRLPECYVRGNNIKYLRVPDEIIEAASRQQQEXXXQRGGRGG 107
            MLPLGLL AAQGHPMLVELKNGET+NGHL+ CDN+MNLTLKEVVQT+P+GD+FFRLPE YVRGNNIKYLRVP+EI++    QQQ     RGGRGG
Sbjct:    1 MLPLGLLTAAQGHPMLVELKNGETLNGHLVNCDNWMNLTLKEVVQTTPEGDRFFRLPEVYVRGNNIKYLRVPEEILDVVREQQQHQPSNRGGRGG 95          
BLAST of mRNA_P-canaliculata_contig9.22911.1 vs. uniprot
Match: A0A0A1T4T2_9HYPO (U6 snRNA-associated Sm-like protein LSm4 n=13 Tax=Hypocreales TaxID=5125 RepID=A0A0A1T4T2_9HYPO)

HSP 1 Score: 158 bits (399), Expect = 8.210e-48
Identity = 83/107 (77.57%), Postives = 90/107 (84.11%), Query Frame = 0
Query:   13 MLPLGLLNAAQGHPMLVELKNGETINGHLLKCDNYMNLTLKEVVQTSPDGDKFFRLPECYVRGNNIKYLRVPDEIIE-AASRQQQEXXXQRGGRGGSHQRGDFGGRG 118
            MLPLGLLNAAQGHPMLVELKNGET+NGHL+ CD +MNLTLKEVVQTSPDGDKF RLPE YV+GNNIKYLRVP+EIIE  A  Q+ +    RGGRGGS  RGD  GRG
Sbjct:    1 MLPLGLLNAAQGHPMLVELKNGETLNGHLVNCDTWMNLTLKEVVQTSPDGDKFMRLPEVYVKGNNIKYLRVPEEIIEQVAESQKGQQGNFRGGRGGS--RGDHSGRG 105          
BLAST of mRNA_P-canaliculata_contig9.22911.1 vs. uniprot
Match: A0A0S6XBM9_BLOB1 (U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=Fungal sp. (strain No.11243) TaxID=1603295 RepID=A0A0S6XBM9_BLOB1)

HSP 1 Score: 158 bits (399), Expect = 1.160e-47
Identity = 76/102 (74.51%), Postives = 84/102 (82.35%), Query Frame = 0
Query:    6 SFDATVAMLPLGLLNAAQGHPMLVELKNGETINGHLLKCDNYMNLTLKEVVQTSPDGDKFFRLPECYVRGNNIKYLRVPDEIIEAASRQQQEXXXQRGGRGG 107
            S   T   LPLGLLNAAQGHPMLVELKNGET+NGHL+ CD YMNLTLKEVVQT+P+GDKFFRL E YVRGNNIKYLR+ DEI++AA  QQQ     +GGRGG
Sbjct:    3 SSQLTHTQLPLGLLNAAQGHPMLVELKNGETLNGHLVNCDTYMNLTLKEVVQTNPEGDKFFRLSEAYVRGNNIKYLRLEDEIVDAAKEQQQNHQASKGGRGG 104          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9.22911.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H0Y1K6_9PEZI2.570e-5281.19U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=P... [more]
A0A165I2W2_XYLHT1.690e-5076.42U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=X... [more]
A0A3E2GTX6_SCYLI3.220e-5077.57U6 snRNA-associated Sm-like protein LSm4 (Fragment... [more]
A0A8H3F1R4_9LECA2.540e-4977.45U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=G... [more]
M3B9N3_PSEFD2.790e-4978.35U6 snRNA-associated Sm-like protein LSm4 (Fragment... [more]
A0A6A6PI97_9PEZI1.170e-4888.10U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=N... [more]
A0A8H4ILH5_9PEZI2.820e-4882.18Protein-tyrosine phosphatase receptor/non-receptor... [more]
B8MLJ3_TALSN7.250e-4877.89U6 snRNA-associated Sm-like protein LSm4 n=4 Tax=E... [more]
A0A0A1T4T2_9HYPO8.210e-4877.57U6 snRNA-associated Sm-like protein LSm4 n=13 Tax=... [more]
A0A0S6XBM9_BLOB11.160e-4774.51U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=F... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 17..83
e-value: 1.3E-18
score: 77.9
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 19..82
e-value: 8.6E-18
score: 63.8
NoneNo IPR availableGENE3D2.30.30.100coord: 13..96
e-value: 7.7E-32
score: 110.6
NoneNo IPR availablePANTHERPTHR23338:SF16U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM4coord: 13..111
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..24
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 25..118
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 20..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 9..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..8
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..24
score: 0.47
IPR027141Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3PANTHERPTHR23338SMALL NUCLEAR RIBONUCLEOPROTEIN SMcoord: 13..111
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 15..116

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig9contigP-canaliculata_contig9:74658..75154 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig9.22911.1mRNA_P-canaliculata_contig9.22911.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig9 74658..75155 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig9.22911.1 ID=prot_P-canaliculata_contig9.22911.1|Name=mRNA_P-canaliculata_contig9.22911.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=118bp
RTITTSFDATVAMLPLGLLNAAQGHPMLVELKNGETINGHLLKCDNYMNL
TLKEVVQTSPDGDKFFRLPECYVRGNNIKYLRVPDEIIEAASRQQQEQQA
QRGGRGGSHQRGDFGGRG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR027141LSm4/Sm_D1/D3
IPR010920LSM_dom_sf