prot_P-canaliculata_contig10702.930.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig10702.930.1
Unique Nameprot_P-canaliculata_contig10702.930.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length140
Homology
BLAST of mRNA_P-canaliculata_contig10702.930.1 vs. uniprot
Match: D8LR14_ECTSI (Flagellar associated protein, transcriptional coactivator-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LR14_ECTSI)

HSP 1 Score: 253 bits (646), Expect = 7.860e-85
Identity = 133/139 (95.68%), Postives = 137/139 (98.56%), Query Frame = 0
Query:    1 MSQDWNTVIISKTRPTATRGQKNAATAAAQRTGTLETERKFAAGENKSSHRGHMNMKKLDDETEEFQHTRVDRGLAQAIQQARLGKKMTQKQLATQINEKPQVVGEYESGKAIPNPQIIGKLERALGVRLPRPGKKGKK 139
            MSQDWNTV+ISKTRPTATRGQKNAATAAA R+GTL+TERKFAAGENKSSHRGHMNMKKLDDETEEFQHTRVDRGLAQAIQQARLGKKMTQKQLATQINEKPQVVGEYESGKAIPNPQ+I KLERALGVRLPRPGKKGKK
Sbjct:    1 MSQDWNTVMISKTRPTATRGQKNAATAAAARSGTLDTERKFAAGENKSSHRGHMNMKKLDDETEEFQHTRVDRGLAQAIQQARLGKKMTQKQLATQINEKPQVVGEYESGKAIPNPQLISKLERALGVRLPRPGKKGKK 139          
BLAST of mRNA_P-canaliculata_contig10702.930.1 vs. uniprot
Match: A0A835ZEI2_9STRA (Flagellar associated protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEI2_9STRA)

HSP 1 Score: 186 bits (473), Expect = 2.060e-58
Identity = 96/137 (70.07%), Postives = 115/137 (83.94%), Query Frame = 0
Query:    3 QDWNTVIISKTRPTATRGQKNAATAAAQRTGTLETERKFAAGENKSSHRGHMNMKKLDDETEEFQHTRVDRGLAQAIQQARLGKKMTQKQLATQINEKPQVVGEYESGKAIPNPQIIGKLERALGVRLPRPGKKGKK 139
            QDW+TV ++K R   T+G KNAA A A RTGTL+TE+++A GENKS+H  HMN+KKLD++T+  +H RVDR LAQAIQQARLGKK+TQKQLAT INEKPQVVGEYESGKA+PNPQ+I K+ERALG RLPRP +  KK
Sbjct:    4 QDWDTVTLAKNRAPTTKGAKNAAVATALRTGTLQTEKRWAGGENKSTHAPHMNLKKLDEDTDNLKHDRVDRSLAQAIQQARLGKKLTQKQLATMINEKPQVVGEYESGKALPNPQLIVKIERALGTRLPRPKRASKK 140          
BLAST of mRNA_P-canaliculata_contig10702.930.1 vs. uniprot
Match: A0A7S2UVN6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVN6_9STRA)

HSP 1 Score: 152 bits (383), Expect = 6.750e-45
Identity = 86/119 (72.27%), Postives = 96/119 (80.67%), Query Frame = 0
Query:   21 QKNAATAAAQRTGTLETERKFAAGENKSSHRGH-MNMKKLDDETEEFQHTRVDRGLAQAIQQARLGKKMTQKQLATQINEKPQVVGEYESGKAIPNPQIIGKLERALGVRLPRPGKKGK 138
            QKN +   A R+G + TERKFAAGENKS H     NM+KLDDETEEF+H RVDR LA AIQQARL KKMTQK LAT INEKPQ+VGEYESG+AIPNPQ+I ++ERALGVRLPR G K K
Sbjct:    6 QKNQSLQRALRSGNVATERKFAAGENKSVHASTGKNMRKLDDETEEFKHDRVDRSLALAIQQARLAKKMTQKALATAINEKPQIVGEYESGRAIPNPQMISRMERALGVRLPRGGGKKK 124          
BLAST of mRNA_P-canaliculata_contig10702.930.1 vs. uniprot
Match: A0A7S4MPQ6_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MPQ6_9STRA)

HSP 1 Score: 135 bits (340), Expect = 9.340e-38
Identity = 76/137 (55.47%), Postives = 102/137 (74.45%), Query Frame = 0
Query:    3 QDWNTVIISKTRPTATRGQKNAATA--AAQRTGTLETERKFAAGENKSSHRGH-MNMKKLDDETEEFQHTRVDRGLAQAIQQARLGKKMTQKQLATQINEKPQVVGEYESGKAIPNPQIIGKLERALGVRLPRPGKK 136
            QDW+ V + ++  +  +    +A    AA+ +G + TERK  AG N+S+H G  +N KKL+ E++E +H +VD+ L++AI QAR+ KKMTQK+LAT INEKPQV+GEYESGKAIPNPQII K+ER LG +LPRPGKK
Sbjct:   10 QDWDAVNVGRSGASGRKAVPKSAAGITAAKASGLVATERKHGAGGNRSAHSGSGVNAKKLE-ESDELKHAKVDKSLSKAIMQARMAKKMTQKELATAINEKPQVIGEYESGKAIPNPQIISKMERKLGCKLPRPGKK 145          
BLAST of mRNA_P-canaliculata_contig10702.930.1 vs. uniprot
Match: A0A6U3S3Y8_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3S3Y8_9STRA)

HSP 1 Score: 133 bits (334), Expect = 7.560e-37
Identity = 80/141 (56.74%), Postives = 97/141 (68.79%), Query Frame = 0
Query:    3 QDWNTVIIS------KTRPTATRGQKNAATAAAQRTGTLETERKFAAGENKSSHRGH-MNMKKLDDETEEFQHTRVDRGLAQAIQQARLGKKMTQKQLATQINEKPQVVGEYESGKAIPNPQIIGKLERALGVRLPRPGKK 136
            QDW  V +       KT P    G   A  A     G L TE+KF AG N+S+H G  +N KKL+ ET+E +H++VD+ L++AI QAR  KK+TQK LAT INEKPQV+ EYESGKAIPNPQII K+ER LGV+LPRPGKK
Sbjct:   10 QDWGAVNVGSSSVRKKTVPKTAHGITQAKAA-----GLLATEKKFGAGGNRSAHSGAGVNAKKLE-ETDELKHSKVDKSLSKAIMQARTAKKLTQKDLATAINEKPQVIAEYESGKAIPNPQIISKMERKLGVKLPRPGKK 144          
BLAST of mRNA_P-canaliculata_contig10702.930.1 vs. uniprot
Match: A0A6U3TVK3_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3TVK3_9STRA)

HSP 1 Score: 132 bits (331), Expect = 1.660e-36
Identity = 75/135 (55.56%), Postives = 97/135 (71.85%), Query Frame = 0
Query:    3 QDWNTVIISKTRPTATRGQKNA-ATAAAQRTGTLETERKFAAGENKSSHRGHMNMKKLDDETEEFQHTRVDRGLAQAIQQARLGKKMTQKQLATQINEKPQVVGEYESGKAIPNPQIIGKLERALGVRLPRPGKK 136
            QDW  V + ++        K A     A+  G L TE+KF AG N+S+H   +N KK++D ++E +  +VD+ L++AIQQAR+ KKMTQK LAT+INEKPQVVGEYESGKA+PN QII K+ER LGV+LPRPGKK
Sbjct:   10 QDWGAVNVGRSSAGRVAVPKTAHGVTRAKAMGLLATEKKFGAGGNRSAHTASVNAKKIED-SDELKLNKVDKSLSKAIQQARMAKKMTQKDLATRINEKPQVVGEYESGKAVPNGQIIVKMERVLGVKLPRPGKK 143          
BLAST of mRNA_P-canaliculata_contig10702.930.1 vs. uniprot
Match: K0SSW2_THAOC (HTH cro/C1-type domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SSW2_THAOC)

HSP 1 Score: 130 bits (328), Expect = 4.850e-36
Identity = 73/136 (53.68%), Postives = 102/136 (75.00%), Query Frame = 0
Query:    3 QDWNTVIISKT-RPTATRGQKNAATAAAQRT-GTLETERKFAAGENKSSHRGHMNMKKLDDETEEFQHTRVDRGLAQAIQQARLGKKMTQKQLATQINEKPQVVGEYESGKAIPNPQIIGKLERALGVRLPRPGKK 136
            QDW +V + ++      +  K+AA  +  +  G ++TERK+ AG N S+H   +N +K++ E++E +H +VD+ L++AIQQAR+ KKMTQK LAT+INEKPQV+GEYE+GKAIPN QII K+ERALG +LPRPGKK
Sbjct:   10 QDWGSVNVGRSGAANRVKVPKSAAGVSRMKAMGIVQTERKYGAGGNASAHTASVNARKIE-ESDELKHNKVDKSLSKAIQQARMAKKMTQKDLATKINEKPQVIGEYENGKAIPNGQIIVKIERALGCKLPRPGKK 144          
BLAST of mRNA_P-canaliculata_contig10702.930.1 vs. uniprot
Match: A0A067CG61_SAPPC (HTH cro/C1-type domain-containing protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CG61_SAPPC)

HSP 1 Score: 129 bits (324), Expect = 1.090e-35
Identity = 77/136 (56.62%), Postives = 92/136 (67.65%), Query Frame = 0
Query:    3 QDWNTVIISKTRPTATRGQ--KNAATAAAQRTGTLETERKFAAGENKSSHRGHMNMKKLDDETEEFQHTRVDRGLAQAIQQARLGKKMTQKQLATQINEKPQVVGEYESGKAIPNPQIIGKLERALGVRLPRPGKK 136
            QDW     +K R     G   K AA   A+R G + TE K   G N+S+H    NM+KLD++TE F+H  VDR L+QA+ +ARL K MTQK LAT INEKPQV+GEYESG+AIPNP II K+ERALG RLPR  KK
Sbjct:    7 QDWEVQGWNKARSGGRIGNESKEAALNRARRAGNVSTEVKHTNGLNRSAHGAAGNMRKLDEDTENFKHDTVDRSLSQALSKARLDKGMTQKALATAINEKPQVIGEYESGRAIPNPAIISKIERALGCRLPRGPKK 142          
BLAST of mRNA_P-canaliculata_contig10702.930.1 vs. uniprot
Match: K3WS97_GLOUD (HTH cro/C1-type domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WS97_GLOUD)

HSP 1 Score: 129 bits (323), Expect = 1.370e-35
Identity = 79/137 (57.66%), Postives = 96/137 (70.07%), Query Frame = 0
Query:    3 QDWNTVIISKTRPTATRGQKNAATAAAQRTGTLETERKFAAGENKSSHRG-HMNMKKLDDETEEFQHTRVDRGLAQAIQQARLGKKMTQKQLATQINEKPQVVGEYESGKAIPNPQIIGKLERALGVRLPRPGKKGK 138
            QDW+T   S   P A+   K+    AA+R G +  E K  AG NKSSH G ++NM+KL+++TE F+H  VDR L+QA+ +AR  KKMTQK LAT INEKPQV+ EYESGKAIPN QII KLERALG +LPR   K K
Sbjct:    7 QDWSTAGWSNKGP-ASGAAKSQQMNAARRQGNVVAEAKHMAGTNKSSHSGANVNMRKLEEDTETFKHNVVDRSLSQALIKARTEKKMTQKALATTINEKPQVIAEYESGKAIPNGQIIAKLERALGAKLPRGAPKKK 142          
BLAST of mRNA_P-canaliculata_contig10702.930.1 vs. uniprot
Match: I3SNY1_LOTJA (HTH cro/C1-type domain-containing protein n=1 Tax=Lotus japonicus TaxID=34305 RepID=I3SNY1_LOTJA)

HSP 1 Score: 127 bits (320), Expect = 3.690e-35
Identity = 78/138 (56.52%), Postives = 97/138 (70.29%), Query Frame = 0
Query:    1 MSQDWNTVIISKTRPTATRGQKNAATAAAQRTGT-LETERKFAAGENKSSHRG-HMNMKKLDDETEEFQHTRVDRGLAQAIQQARLGKKMTQKQLATQINEKPQVVGEYESGKAIPNPQIIGKLERALGVRLPRPGKK 136
            +SQDW  V++ K  PTA   + + A  AA+R G  +ET RK  AG NK++  G  +N K+LD++T+   H RV   L +AI QAR+GKK+TQ QLA  INEKPQV+ EYESGKAIPN QIIGKLERALG +LP  GKK
Sbjct:    8 VSQDWEPVVLRKKAPTAAARRDDKAVNAARRAGADIETVRKHNAGTNKAASSGTSLNTKRLDEDTKNLTHDRVPTELKKAIMQARMGKKLTQAQLAQIINEKPQVIQEYESGKAIPNQQIIGKLERALGAKLP--GKK 143          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10702.930.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LR14_ECTSI7.860e-8595.68Flagellar associated protein, transcriptional coac... [more]
A0A835ZEI2_9STRA2.060e-5870.07Flagellar associated protein n=1 Tax=Tribonema min... [more]
A0A7S2UVN6_9STRA6.750e-4572.27Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S4MPQ6_9STRA9.340e-3855.47Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A6U3S3Y8_9STRA7.560e-3756.74Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A6U3TVK3_9STRA1.660e-3655.56Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
K0SSW2_THAOC4.850e-3653.68HTH cro/C1-type domain-containing protein n=1 Tax=... [more]
A0A067CG61_SAPPC1.090e-3556.62HTH cro/C1-type domain-containing protein n=3 Tax=... [more]
K3WS97_GLOUD1.370e-3557.66HTH cro/C1-type domain-containing protein n=1 Tax=... [more]
I3SNY1_LOTJA3.690e-3556.52HTH cro/C1-type domain-containing protein n=1 Tax=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001387Cro/C1-type helix-turn-helix domainSMARTSM00530mbf_short4coord: 78..133
e-value: 1.3E-10
score: 51.3
IPR001387Cro/C1-type helix-turn-helix domainPFAMPF01381HTH_3coord: 79..130
e-value: 5.0E-13
score: 48.9
IPR001387Cro/C1-type helix-turn-helix domainPROSITEPS50943HTH_CROC1coord: 79..133
score: 12.833
NoneNo IPR availableGENE3D1.10.260.40coord: 63..139
e-value: 1.1E-27
score: 97.2
NoneNo IPR availablePANTHERPTHR10245:SF15ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1coord: 1..132
NoneNo IPR availablePANTHERPTHR10245ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1coord: 1..132
IPR013729Multiprotein bridging factor 1, N-terminalPFAMPF08523MBF1coord: 3..71
e-value: 3.1E-19
score: 69.2
IPR010982Lambda repressor-like, DNA-binding domain superfamilySUPERFAMILY47413lambda repressor-like DNA-binding domainscoord: 75..130

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10702contigP-canaliculata_contig10702:1698..5358 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10702.930.1mRNA_P-canaliculata_contig10702.930.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig10702 1602..6329 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig10702.930.1 ID=prot_P-canaliculata_contig10702.930.1|Name=mRNA_P-canaliculata_contig10702.930.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=140bp
MSQDWNTVIISKTRPTATRGQKNAATAAAQRTGTLETERKFAAGENKSSH
RGHMNMKKLDDETEEFQHTRVDRGLAQAIQQARLGKKMTQKQLATQINEK
PQVVGEYESGKAIPNPQIIGKLERALGVRLPRPGKKGKK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001387Cro/C1-type_HTH
IPR013729MBF1_N
IPR010982Lambda_DNA-bd_dom_sf