prot_P-canaliculata_contig10611.816.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig10611.816.1
Unique Nameprot_P-canaliculata_contig10611.816.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length359
Homology
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BLAST of mRNA_P-canaliculata_contig10611.816.1 vs. uniprot
Match: D7G8K1_ECTSI (SET domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8K1_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 1.590e-29
Identity = 137/433 (31.64%), Postives = 172/433 (39.72%), Query Frame = 0 
Query:    1 MLDNPWDAAEVTCCLLPG---DMLFERRKARLRASGQHTFRKLRIRRGQWSSDLLQFNRCACLAVSELNLLEAQ--EDARSAGHPGQSRPGVDVAQARKVMG------------------GARQAVTYAASETFCSRPGANFGDERIVKGMRLA----------LDEED-------------------ACGCQLAL-DEPRYSNASRG---------------------------------------------FPGRAVSIENELAALTEIVVQLLEARDIFPTKLESDERLIREV--NGDAFPELLNALKYRVTIKRILAEHLHLAERAIVFVQDIKQELESIRDATVDHGNTKTDTSWDMSTHPVEDD--DHVPISFKTYLEDLRGCFLALRAPLSATPGGMDGGFGCEVRQLETTSFCARVLVDDSANVS 331
            MLDN WDAAEV C L P      L  RRKA LRASGQHT R LR+RR  W  +LL+F RCACL   EL+ LEA   + AR A    QSRP     + R + G                    R +         C       GD     G   A             ED                   A  C L L DE    +  RG                                             FP RA++ +NE+AALTE V  L +ARD +PT LE DE   RE   + D+ PEL  AL YRVT+KRILA  L +AE A  FVQ+I    +  + +  +      +    M + PV     DH+  S  +    L    L+ RA  S T GG++    C    L++  F     +D  + VS
Sbjct:  268 MLDNEWDAAEVICSLPPSHDQSPLDRRRKACLRASGQHTVRILRVRRDVWPEELLRFCRCACLTAPELDNLEALGGQQARMAS---QSRPS-GAMRPRGIAGTVEPTAAAVPPYQDLCRCARRSSKQATRGRAECGSGSGGSGDRTATGGATAAPLSSSLPSCEKAREDTINNNNGDDDTLREGLSVHASKCTLPLRDEHEEGSGDRGDRGAGAGAKEEGQEDGDVPSGAGGAGEKRGGVDSPDENPDASGCRFPCRALTAQNEVAALTEAVKYLAQARDNYPTTLEHDENAYREARTSPDSSPELATALIYRVTVKRILARQLEMAEAANAFVQNIAAVRDQFQSSDENGKGAGHENGSSMVSAPVSSSRLDHLLASPPSPPSRLSSPPLSTRAS-STTGGGIENK--CHQHHLQSHRFSLATGIDSPSFVS 693
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10611.816.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8K1_ECTSI1.590e-2931.64SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036464Rubisco LSMT, substrate-binding domain superfamilyGENE3D3.90.1420.10coord: 100..236
e-value: 1.7E-6
score: 29.9
IPR036464Rubisco LSMT, substrate-binding domain superfamilySUPERFAMILY81822RuBisCo LSMT C-terminal, substrate-binding domaincoord: 143..231

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10611contigP-canaliculata_contig10611:1944..4387 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10611.816.1mRNA_P-canaliculata_contig10611.816.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig10611 557..5132 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig10611.816.1 ID=prot_P-canaliculata_contig10611.816.1|Name=mRNA_P-canaliculata_contig10611.816.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=359bp
MLDNPWDAAEVTCCLLPGDMLFERRKARLRASGQHTFRKLRIRRGQWSSD
LLQFNRCACLAVSELNLLEAQEDARSAGHPGQSRPGVDVAQARKVMGGAR
QAVTYAASETFCSRPGANFGDERIVKGMRLALDEEDACGCQLALDEPRYS
NASRGFPGRAVSIENELAALTEIVVQLLEARDIFPTKLESDERLIREVNG
DAFPELLNALKYRVTIKRILAEHLHLAERAIVFVQDIKQELESIRDATVD
HGNTKTDTSWDMSTHPVEDDDHVPISFKTYLEDLRGCFLALRAPLSATPG
GMDGGFGCEVRQLETTSFCARVLVDDSANVSSTSTGMCSRSAAGDSRPKM
PATSSVPV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036464Rubisco_LSMT_subst-bd_sf