prot_P-canaliculata_contig10548.756.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig10548.756.1
Unique Nameprot_P-canaliculata_contig10548.756.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length397
Homology
BLAST of mRNA_P-canaliculata_contig10548.756.1 vs. uniprot
Match: D7G4I1_ECTSI (Predicted mitochondrial protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4I1_ECTSI)

HSP 1 Score: 323 bits (827), Expect = 6.220e-104
Identity = 162/251 (64.54%), Postives = 197/251 (78.49%), Query Frame = 0
Query:   73 VLPGSRPSKGAENQDEAAVKYANDGDWKKALQLIKAMRDGDLKPSVTAYVATIEACRKGLFFDYASALLRDMFRVCMPEDLFAEFAPNHPNDAEVTQTERVFALLLMMREDGVSPVQETYRAIMGLCSKEGLWHLSLLLLDHLRRSGLVPGKFVWDEICTVLFKSGHTEMATMMFEMALDEDVSGEETTGVSNGLLDLHNHTASTALAAVRIALLDMVRKPAGRGYHDPMRPLSVVTGMGNNSKDGEAVIK 323
            + PG+   +GAE QDEAAV+YA  GDW+K++QLIKAMRD D  PSV AYVATIEACRK   +D+AS LL DM +VC+PEDL   +A  HPN   VTQT++VF L +MMR+D + P +ETYRAIMGL SKE LW +SLLL++HL+R+GLVPGKFV+DEIC+VLFK+GH EMATM+FE AL + +  EE    +   LDLHNHT STALAAVR+ LLDM RKPA R +HDP + L ++TGMGNNSKDGEAVIK
Sbjct:  143 LAPGAVAPEGAEKQDEAAVEYAVGGDWEKSVQLIKAMRDSDFVPSVNAYVATIEACRKAGEYDHASTLLSDMNKVCLPEDLIKAYAAPHPNAPGVTQTQKVFCLAMMMRQDKIEPFEETYRAIMGLASKEKLWQVSLLLVEHLKRNGLVPGKFVYDEICSVLFKTGHPEMATMIFEDALGDKI--EELNSFAPPELDLHNHTVSTALAAVRVVLLDMARKPATRTFHDPAQELLIITGMGNNSKDGEAVIK 391          
BLAST of mRNA_P-canaliculata_contig10548.756.1 vs. uniprot
Match: A0A835YUL6_9STRA (Smr domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUL6_9STRA)

HSP 1 Score: 234 bits (597), Expect = 4.620e-70
Identity = 126/266 (47.37%), Postives = 174/266 (65.41%), Query Frame = 0
Query:   73 VLPGSRPSKGAENQDEAAVKYANDGDWKKALQLIKAMRDGDLKPSVTAYVATIEACRKGLFFDYASALLRDMFRVCMPEDLFAEFAPNHPNDAEVTQTERVFAL---------------LLMMREDGVSPVQETYRAIMGLCSKEGLWHLSLLLLDHLRRSGLVPGKFVWDEICTVLFKSGHTEMATMMFEMALDEDVSGEETTGVSNGLLDLHNHTASTALAAVRIALLDMVRKPAGRGYHDPMRPLSVVTGMGNNSKDGEAVIK 323
            V PG+  +      ++A  KYA+ G+W KA+ LI  MR+ +L PS+ AY  TI A R+GL FD A ALL DM+  CMP DLFA++A   P+DA  TQT+ VFAL               LL MR D + P  +TYRA+MG+C+K+ LWHLSLLLL+H+R  G+ PGKF+++EICTVL   G  ++A +++E +L E V   E     +  +DLH+ T +TA AAVR AL DM+R+P+GR +HDP  P+ ++TG+G  S++G AVIK
Sbjct:   12 VPPGAEAAPETAKYNDAIKKYASGGEWAKAVVLIDKMREINLSPSIEAYGDTITALRRGLEFDRADALLADMYDACMPADLFAKYAAADPSDASSTQTQCVFALENXXXXXXXXXXXXLLLCMRTDQLEPDVDTYRAVMGMCTKDRLWHLSLLLLEHMRLRGVQPGKFIYNEICTVLDMEGKHDLAEIVYERSLGEGVF--EPWIEDDNKVDLHSFTLNTARAAVRSALTDMLRQPSGRPFHDPAAPMHIITGVGRRSEEGVAVIK 275          
BLAST of mRNA_P-canaliculata_contig10548.756.1 vs. uniprot
Match: D7G4J1_ECTSI (Smr domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4J1_ECTSI)

HSP 1 Score: 146 bits (368), Expect = 3.630e-37
Identity = 85/253 (33.60%), Postives = 136/253 (53.75%), Query Frame = 0
Query:   94 ANDGDWKKALQLIKAMRDGDLKPSVTAYVATIEACRKGLFFDYASALLRDMFRVCMPEDLFAEFAPNHPNDAEVTQTERVFALLLMMRED-GVSPVQETYRAIMGLCSKEGLWHLSLLLLDHLRRSGLVPGKFVWDEICTVLFKSGHTEMATMMFEMAL-DEDVSGEETTG---------------------VSNGLLDLHNHTASTALAAVRIALLDMVRKPAGRGYHDPMRPLSVVTGMGNNSKDGEAVIK 323
            + +GDW+ AL++++ +RD  +KPS++ ++  I  CR+ L +D AS   R+M    + +  F + A     D       R   ++  M+ D G+ P   TYRA++ LC  EG W  ++LLL+H RRS      F +D + T + K G+ E++TM++E+ + D D +  ET G                         +L+LH+ T   AL  V++ALLD++R+P  R Y    +   ++TGMGNNSKD EA+IK
Sbjct:    2 SREGDWEGALEMLQRIRDKGMKPSMSTHMDVISVCRRALEWDQASKAYREMIEAHLTDHPFDDMACQDYEDESNHVFARACGIVAGMQADAGIKPNNGTYRALLQLCKDEGSWEAAILLLEHSRRSKAKLNLFSFDLLITTVAKQGYKEVSTMLYELGVVDADRALLETEGNXXXXXXXXVEWPKWPLKVGRTGGAILELHDLTQGIALETVQVALLDVIRRPLRRPYWSGDKRWRIITGMGNNSKDREAIIK 254          
BLAST of mRNA_P-canaliculata_contig10548.756.1 vs. uniprot
Match: A0A812T8Y8_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812T8Y8_9DINO)

HSP 1 Score: 55.5 bits (132), Expect = 8.830e-5
Identity = 45/139 (32.37%), Postives = 63/139 (45.32%), Query Frame = 0
Query:  192 YRAIMGLCSKEGLWHLSLLLLDHLRRSGLVPGKFVWDEICTVLFKSGHTEMATMMFEMALDEDVSGEETTGVSNGLLDLHNHTASTALAAVRIALLDMV--------RKPAGRGYHDPMRPLSVVTGMGNNSKDGEAVI 322
            + A +  C     W  +L L++ ++  GL P   +WD++   +  SG  EMA  M   AL  +         +   LDLH  T   A  AVRIALLD+          K A  G       LS+V G+G  SK GEA++
Sbjct:   69 FDAAISSCCHARQWQHALRLVEDMQDDGLAPDTGIWDKLLEAMVLSG--EMAAAM---ALCREAKALLGLRPAAQGLDLHGKTVELAKLAVRIALLDVALALQHGQAAKSAELGL-TAQGSLSLVVGLGRQSKTGEAIL 201          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10548.756.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G4I1_ECTSI6.220e-10464.54Predicted mitochondrial protein n=2 Tax=Ectocarpus... [more]
A0A835YUL6_9STRA4.620e-7047.37Smr domain-containing protein n=1 Tax=Tribonema mi... [more]
D7G4J1_ECTSI3.630e-3733.60Smr domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A812T8Y8_9DINO8.830e-532.37Hypothetical protein n=1 Tax=Symbiodinium natans T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 91..160
e-value: 2.3E-6
score: 29.0
coord: 164..268
e-value: 1.2E-8
score: 36.5
NoneNo IPR availableGENE3D3.30.1370.110coord: 269..328
e-value: 3.4E-5
score: 25.9
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 191..220
e-value: 0.57
score: 10.6
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 82..116
score: 6.369
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 223..257
score: 5.251
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 117..151
score: 5.13
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 188..222
score: 8.659
IPR036063Smr domain superfamilySUPERFAMILY160443SMR domain-likecoord: 267..326

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10548contigP-canaliculata_contig10548:2844..7860 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10548.756.1mRNA_P-canaliculata_contig10548.756.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig10548 1404..8010 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig10548.756.1 ID=prot_P-canaliculata_contig10548.756.1|Name=mRNA_P-canaliculata_contig10548.756.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=397bp
MTEALSVTTAAVAEFSNRDTFRREPPLLALVSWRRGRRGRGAMSAVAATL
ASSDANEKSPPVEARIGKVSEKVLPGSRPSKGAENQDEAAVKYANDGDWK
KALQLIKAMRDGDLKPSVTAYVATIEACRKGLFFDYASALLRDMFRVCMP
EDLFAEFAPNHPNDAEVTQTERVFALLLMMREDGVSPVQETYRAIMGLCS
KEGLWHLSLLLLDHLRRSGLVPGKFVWDEICTVLFKSGHTEMATMMFEMA
LDEDVSGEETTGVSNGLLDLHNHTASTALAAVRIALLDMVRKPAGRGYHD
PMRPLSVVTGMGNNSKDGEAVIKVMLGGCDRNPLPWYRVYYIPPFIAFFS
SDIIALNQSVQAHNSETAYKTTGAVSISHTCRSVVVDLSSLTSLPR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat
IPR036063Smr_dom_sf