prot_P-canaliculata_contig10378.522.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig10378.522.1
Unique Nameprot_P-canaliculata_contig10378.522.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length738
Homology
BLAST of mRNA_P-canaliculata_contig10378.522.1 vs. uniprot
Match: A0A6H5JYW2_9PHAE (SH2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JYW2_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 1.150e-30
Identity = 208/572 (36.36%), Postives = 271/572 (47.38%), Query Frame = 0
Query:   15 GSPIGGAGWRLPLVEGGEEDLGGSTSVQHALLVYEGGFFSDEKGRLGRFPTLDELLKSKISALARYPLSFRRQRGRYILIEPPPRGTPATDSGEANPEGTLPAAPMSSTHGTSNNPS----AERDGSSGA---------TQCFAPAEDGI---PGE---GVGMNPAWSSPGSA------SPRA-SAGAFRDNHSPRGGDRRLLRGSNNRHDSYSSRG------GNWIDGRSKSNQIGVLGPAGGGASGXXXXXXXXXXXXXXXXXXREQPSAASGAWGAGVRSKRLGSGASG-SENEALSA----AVATDGLVDGVGKSLPLSSPEGGSFRRTLASQRGWKQPPNTSLAVDDVSSPHLAAEASAV---------REMYSRAHAELYGGRTSNQPSAMARAAEEVAAVTTAKGHPLARRVEEHMHAVQSGADRALATLEVWLKPLVKRRQ---------------SPASSAGGQGSIRGS--SSAYRSPHDPRP--------PLAWSETGERGTRWIASVSTTVEAAAPLARAAALLMERANARRLELIDSAQALRERAICLAVAEASAVGEG 515
            GSP G    +   +EG  + L GST VQHALL++EGGFFSDEKGRLGRF TL+ELLKSKISA+AR+PLSFRR+R  Y+LI+   +  P   S +          P SST  T+ +PS    A  D ++ A             AP+ +G    PG    G     A SSP S+      SPRA +AGA  +N   +   RR     N   +S S+        G+W D R  S+        G  A+     XXXXXX    XXXX  + S  +    A  R+    S  SG    ++LS+    AVA+ G   G G +  L    G     + A+ RG     + S AVDD  +    +  S++          +   +   ++ G    +  SAMA AAE  A +  A+ HP  RRVEE   + Q+G DRA A L   L+PLV R+                S +SSA  +G  R S  SS++ S  D  P        P    E  +R   WIA+      A APLA AAALLMERA   R EL  SA  L ERA+ LAVAE ++   G
Sbjct:  422 GSPQGEKLGKGLSLEGVRDSLAGSTLVQHALLMHEGGFFSDEKGRLGRFSTLEELLKSKISAIARHPLSFRRERNGYVLID---QDDPTALSHQ----------PASSTTSTNLSPSTNSFARADKAASAHDQIIRGNPASSVAPSANGNLFGPGSSRLGAAAVDATSSPPSSPLVSSLSPRAGNAGA--ENPFDKALRRRR---PNTTAESGSTTAVSRRVTGDWTDSRVPSHGKPNARRGGSVANSGAGSXXXXXXLWMEXXXXXVEQSGPAAVVAAPSRNVTGVSNVSGLPHGDSLSSDGGTAVAS-GSFRGTGGAESLLDSRG-----SAAAGRGGSMNWSGS-AVDDAGARGRMSSPSSIFSDVRGPSFHQQQHQPRMKISGSGRRDTTSAMAEAAEAAAVMAAARDHPDVRRVEERTRSAQAGVDRAAAVLAQRLRPLVARKTPMHSPLQRSPRHSQTSSSSSADFRGFRRTSPPSSSFSSSRDVSPRSLDVSSAPFLGREPQQR---WIAAAPEG-SATAPLAAAAALLMERACTCRRELAVSAHELNERAVALAVAETTSPAAG 964          
BLAST of mRNA_P-canaliculata_contig10378.522.1 vs. uniprot
Match: A0A835YQQ8_9STRA (SH2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQQ8_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 2.610e-7
Identity = 29/52 (55.77%), Postives = 39/52 (75.00%), Query Frame = 0
Query:   38 STSVQHALLVYEGGFFSDEKGRLGRFPTLDELLKSKISALARYPLSFRRQRG 89
            +   QH L+ YE G ++D++GRLGRFPTL+ELL+SK++ LA  PL FRR  G
Sbjct:  378 AKGAQHVLINYEQGHYTDQQGRLGRFPTLEELLQSKVAQLATRPLRFRRVHG 429          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10378.522.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JYW2_9PHAE1.150e-3036.36SH2 domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835YQQ8_9STRA2.610e-755.77SH2 domain-containing protein n=1 Tax=Tribonema mi... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 480..500

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10378contigP-canaliculata_contig10378:3887..7963 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10378.522.1mRNA_P-canaliculata_contig10378.522.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig10378 1562..8084 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig10378.522.1 ID=prot_P-canaliculata_contig10378.522.1|Name=mRNA_P-canaliculata_contig10378.522.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=738bp
MVFSPSAAGARWTRGSPIGGAGWRLPLVEGGEEDLGGSTSVQHALLVYEG
GFFSDEKGRLGRFPTLDELLKSKISALARYPLSFRRQRGRYILIEPPPRG
TPATDSGEANPEGTLPAAPMSSTHGTSNNPSAERDGSSGATQCFAPAEDG
IPGEGVGMNPAWSSPGSASPRASAGAFRDNHSPRGGDRRLLRGSNNRHDS
YSSRGGNWIDGRSKSNQIGVLGPAGGGASGSGSLWMEAAAAAAAATATRE
QPSAASGAWGAGVRSKRLGSGASGSENEALSAAVATDGLVDGVGKSLPLS
SPEGGSFRRTLASQRGWKQPPNTSLAVDDVSSPHLAAEASAVREMYSRAH
AELYGGRTSNQPSAMARAAEEVAAVTTAKGHPLARRVEEHMHAVQSGADR
ALATLEVWLKPLVKRRQSPASSAGGQGSIRGSSSAYRSPHDPRPPLAWSE
TGERGTRWIASVSTTVEAAAPLARAAALLMERANARRLELIDSAQALRER
AICLAVAEASAVGEGGDSPDPGASFSRNFLGGGGSLFSPSSDERYVGGAA
HRSKATTVGFGGASRQSIVQEVAEGLPGLSSCRDFERILGEETRGRDCAA
LFVITKAHNDGAQQQAAAARSPLSVGSDLGSSVSDSSVVAEPSSTSFGAD
LFAVGGERFATTARGVRQGKHSPTRKEIDAKSSPDSWREVFRDVAFAEEH
WKELVVDWCSAGLAFREACEDDFGEADGGMTQDFLFE*
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