prot_P-canaliculata_contig10351.488.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig10351.488.1
Unique Nameprot_P-canaliculata_contig10351.488.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length688
Homology
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BLAST of mRNA_P-canaliculata_contig10351.488.1 vs. uniprot
Match: D7FTS4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTS4_ECTSI)

HSP 1 Score: 335 bits (859), Expect = 8.500e-103
Identity = 249/603 (41.29%), Postives = 331/603 (54.89%), Query Frame = 0 
Query:  118 VSRPFRVIT--KAPSDETLRATNMDDLRRGTSGG---ERVMTLVGFEGISKLRYFLMLARESWAIRTAVPGVPEAQMLPSTSIAAQRYLEEVRDAMTGSLRDEV-------DAQVELLEGLTDEMIFDTTVKAAFFSTGDVLFEIIRRVVGIIDGIPSAADKSVAAGLQNDKLHSENEVSRDHFKKSHQAALVDARSLSAAAAVFDAAFFHSLEISRRMDFVARPLPFSLPTLAEILVNAFFGVRRRLQRYRKSKASADDSGWSRQENVYRMRQRSNAFLLESFEEGRDVDEKRVLDHVVRAVNGISDAIILFNIEHENVGLVRNLVGVGLGRAWRSGVEPARSQTLDFLVAINDRTMDLIQELGLVERKKREVEEARRCRRNRHERAPPPLTTNDATANKSRRHSLAVYVYRLGF----PGRSPDARCSKTNCGGGALSGEPSLDTAEDSEHDPLEEGNGKKFGEAGVTNHALGEVRHEEAHGDTS----------LEATLDGGGRPDS--------------SSPRDSLLSSVPVILHSYAKLLNALVCGSYDLKTAFLSACEVDLLNLGQRGGCLDVLENLDGGSPRMVLRESSRFLREI 680
            VSRPFR+    K    E+   +  D     ++ G    R + LVGFE I +LR+FL++A ESWAIR  V G    ++L    +AAQRYL  V + MTG LRD+V       DAQVEL++ L DEMI D  VK AFFSTGD+ FEI RR+         AA  +VAAG   +    E     D F    +A + DAR +SA AAV DAAFFHS++I +R+D V RP P SLP +AE LV  +  + RR+    +  A   D     + ++          L E      D     VLD VVRA+NGISD + LFNIEHE++G+VRNLVGVGLG   R G++PA S  L F+V +NDR +DLI++L   E+++R++EEAR         A  P++ +  T+ K++    +V+  RLG     P RS     S  +       G P ++   D   + + EG     G A  T    G  + E++  D +          LE    GG    S              SSPR   LSS PV+LHSYAKLLNALVCGSY+L+ AF S+CEVD+ N+G+ GG LDVL  LDGG+PR+V R+++ FL EI
Sbjct:    2 VSRPFRITAAKKLAHCESAVGSAADKGPETSASGADEHRHILLVGFEDICRLRHFLVVACESWAIRNGV-GTRAKELLSCAPVAAQRYLAGVLEVMTGPLRDQVLQTEGTVDAQVELMQDLADEMILDAVVKEAFFSTGDIFFEISRRL--------EAAAATVAAGSAVNTAAGEIAFRHDGFD-GRRAVVSDARLISATAAVLDAAFFHSIQIPQRIDLVGRPKPMSLPAVAEHLVFVYCALCRRIVTNCEDGADNSDIDTGGRNDLKGFSPAGVERLAEDAMSPLDALSTGVLDRVVRALNGISDVVSLFNIEHEHLGIVRNLVGVGLGVKVRVGIQPAASDALAFVVRVNDRAVDLIEDLDRREQERRQLEEARLL-------ALGPVSVSP-TSEKNKGKKRSVFA-RLGSLSPRPRRSVTPPLSPPSPAVEPPVGLPPINDNSDVRTNYILEGGS---GSASKTTARAGVPKQEKSDVDNASGGLLGGLVGLEGRRGGGNSVGSPPPPSATQCFESQVSSPR-GFLSSAPVLLHSYAKLLNALVCGSYNLREAFFSSCEVDIRNIGREGGYLDVLSRLDGGAPRLVFRQTALFLHEI 581
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10351.488.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FTS4_ECTSI8.500e-10341.29Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..330
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 350..687
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 331..349

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10351contigP-canaliculata_contig10351:7108..9983 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10351.488.1mRNA_P-canaliculata_contig10351.488.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig10351 7108..9983 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig10351.488.1 ID=prot_P-canaliculata_contig10351.488.1|Name=mRNA_P-canaliculata_contig10351.488.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=688bp
LLKTNKRLGTVDRWDSIRGLLRFLGHAPLLHIEGIIWISTSGQKVHCIAA
VSNWSLFLIVPQRGSSLVGGIAHGRRIKTINTGSPKLLEIALSSILEISM
VSAREHLNTFAKIEANWVSRPFRVITKAPSDETLRATNMDDLRRGTSGGE
RVMTLVGFEGISKLRYFLMLARESWAIRTAVPGVPEAQMLPSTSIAAQRY
LEEVRDAMTGSLRDEVDAQVELLEGLTDEMIFDTTVKAAFFSTGDVLFEI
IRRVVGIIDGIPSAADKSVAAGLQNDKLHSENEVSRDHFKKSHQAALVDA
RSLSAAAAVFDAAFFHSLEISRRMDFVARPLPFSLPTLAEILVNAFFGVR
RRLQRYRKSKASADDSGWSRQENVYRMRQRSNAFLLESFEEGRDVDEKRV
LDHVVRAVNGISDAIILFNIEHENVGLVRNLVGVGLGRAWRSGVEPARSQ
TLDFLVAINDRTMDLIQELGLVERKKREVEEARRCRRNRHERAPPPLTTN
DATANKSRRHSLAVYVYRLGFPGRSPDARCSKTNCGGGALSGEPSLDTAE
DSEHDPLEEGNGKKFGEAGVTNHALGEVRHEEAHGDTSLEATLDGGGRPD
SSSPRDSLLSSVPVILHSYAKLLNALVCGSYDLKTAFLSACEVDLLNLGQ
RGGCLDVLENLDGGSPRMVLRESSRFLREILAECDSS*
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