prot_P-canaliculata_contig10252.391.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig10252.391.1
Unique Nameprot_P-canaliculata_contig10252.391.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length381
Homology
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BLAST of mRNA_P-canaliculata_contig10252.391.1 vs. uniprot
Match: A0A6H5LAU8_9PHAE (CXXC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAU8_9PHAE)

HSP 1 Score: 151 bits (382), Expect = 1.810e-36
Identity = 73/116 (62.93%), Postives = 86/116 (74.14%), Query Frame = 0 
Query:  234 LRPSLVLARNPNRSGYQWPARVCDKDEVEESFSHSDLDPVTHEHKVL---VVFLCEGGHHYFAWVPEGDVSLMPAGDIGLGKFGELWPVDFTAAVMWARQLSRVQIDEEQKKLLEA 346
            LRPS+VLA+NPNR G  WPAR+CD+DEVEESF+HSDL+     H+ L   +VFLCEGGHHYFAWV E D+  MP+GD GLG     W +DF+A VMWARQLS +Q  EE KKL  A
Sbjct:  523 LRPSIVLAKNPNRGGNLWPARLCDRDEVEESFAHSDLNAEAQAHRALRALLVFLCEGGHHYFAWVSESDIFPMPSGDEGLGAEAGEWLIDFSAGVMWARQLSALQAAEENKKLTAA 638
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BLAST of mRNA_P-canaliculata_contig10252.391.1 vs. uniprot
Match: D7G6J0_ECTSI (CXXC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6J0_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 5.750e-21
Identity = 57/113 (50.44%), Postives = 69/113 (61.06%), Query Frame = 0 
Query:  234 LRPSLVLARNPNRSGYQWPARVCDKDEVEESFSHSDLDPVTHEHKVLVVFLCEGGHHYFAWVPEGDVSLMPAGDIGLGKFGELWPVDFTAAVMWARQLSRVQIDEEQKKLLEA 346
            LRPS+VLA+NPNR G  WPAR+CD+DEVEESF+HSDL+                     A   E D+  MP+GD GLG     W +DF+A VMWARQLS +Q  EE KK + A
Sbjct:  181 LRPSIVLAKNPNRGGNLWPARLCDRDEVEESFAHSDLN---------------------AEAQESDIFPMPSGDEGLGAEAGEWLIDFSAGVMWARQLSALQAAEENKKRVTA 272
[Close]
BLAST of mRNA_P-canaliculata_contig10252.391.1 vs. uniprot
Match: A0A835YWT3_9STRA (AP2/ERF domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWT3_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 3.660e-6
Identity = 35/86 (40.70%), Postives = 48/86 (55.81%), Query Frame = 0 
Query:  234 LRP--SLVLARNPNRSGYQWPARVCDKDEVEESFSHSDLDPVTHEHKVLVVFLCEGGHHYFAWVPEGDVSLMPAGDIGLGKFGELW 317
            +RP  ++ LARNP R    WPAR+CD+ EV+E  S  +  P   +  VLVV+LC+ GHH  AWV   D++   A      +  E W
Sbjct:    5 IRPIKTIALARNPQRRKL-WPARICDQQEVQEWIS--EKGPPHSKGLVLVVYLCDEGHHVVAWVLPTDLTPYRAHRTQDARLAEEW 87
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10252.391.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5LAU8_9PHAE1.810e-3662.93CXXC-type domain-containing protein n=1 Tax=Ectoca... [more]
D7G6J0_ECTSI5.750e-2150.44CXXC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A835YWT3_9STRA3.660e-640.70AP2/ERF domain-containing protein n=1 Tax=Tribonem... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSUPERFAMILY63748Tudor/PWWP/MBTcoord: 238..339

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10252contigP-canaliculata_contig10252:3067..7868 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10252.391.1mRNA_P-canaliculata_contig10252.391.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig10252 3067..7869 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig10252.391.1 ID=prot_P-canaliculata_contig10252.391.1|Name=mRNA_P-canaliculata_contig10252.391.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=381bp
SGGGGGSGSPATMSSAARAARAARTWTKESRGGAGKQKRVPKAASSRSRN
KSAEEDSHEEEDGAEKDAREKGQGDGERGNKEAETAAKPPGKKTFAANKE
RVAYRPRHAGGTASKSTAAQGKFSPGSSSRVTLAPAIPAASAAPTPAAYA
SWTKKTGETISRHPIVPGRTVPEDGRPATTAAVAPATLPTSSRDGGVGNG
GSSSGGGGGGSSSIASSVGSSVSVVPDGRGKPTLRPSLVLARNPNRSGYQ
WPARVCDKDEVEESFSHSDLDPVTHEHKVLVVFLCEGGHHYFAWVPEGDV
SLMPAGDIGLGKFGELWPVDFTAAVMWARQLSRVQIDEEQKKLLEAEGDL
RRQEAPPYKRPRQASPRSTPTASAPPSQAGA
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