prot_P-canaliculata_contig101224.212.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-canaliculata_contig101224.212.1
Unique Name	prot_P-canaliculata_contig101224.212.1
Type	polypeptide
Organism	Pelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length	107

Homology

The following BLAST results are available for this feature:

BLAST of mRNA_P-canaliculata_contig101224.212.1 vs. uniprot

BLAST of mRNA_P-canaliculata_contig101224.212.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29

ZOOM

x 1

POSITION

0


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002797	Polysaccharide biosynthesis protein	PFAM	PF01943	Polysacc_synt	coord: 3..104 e-value: 2.9E-7 score: 30.2
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 64..83
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 40..63
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..6
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 7..28
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 84..106
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 107..107
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 29..39
None	No IPR available	TMHMM	TMhelix		coord: 41..63
None	No IPR available	TMHMM	TMhelix		coord: 84..106
None	No IPR available	TMHMM	TMhelix		coord: 9..31

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-canaliculata_contig101224	contig	P-canaliculata_contig101224:445..765 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Pelvetia canaliculata dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-canaliculata_contig101224.212.1	mRNA_P-canaliculata_contig101224.212.1	Pelvetia canaliculata dioecious	mRNA	P-canaliculata_contig101224 445..765 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-canaliculata_contig101224.212.1 ID=prot_P-canaliculata_contig101224.212.1|Name=mRNA_P-canaliculata_contig101224.212.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=107bp
SKFLKNGSWISLGFGIKSISQFLVSIFLTRILLPNTLGDYFLVANLVPFV
NIIGSLGLPQTLVKIVPKLFLADNYHAISKYYTFFFKILFVSTLLISLIF
ILVFSFF

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002797	Polysacc_synth