mRNA_P-canaliculata_contig9999.24108.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig9999.24108.1 vs. uniprot
Match: D7G5D6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5D6_ECTSI) HSP 1 Score: 163 bits (413), Expect = 1.190e-39 Identity = 114/317 (35.96%), Postives = 163/317 (51.42%), Query Frame = 3 Query: 909 KSETYGECQPDTISFDGTPPCTDCPFGDVTISAGQTECVLGALVYLNLPQSVADAIVEDAVGGFAGPGWAVFDDRAWLRVLLAEDANVLSLAGTFHRWEDVDPTIPASAVIFAYIYTDDDPDNFLSSQGTLDTSTGAFTVVVEDVPTGESSLVLSFAILDSADAPPDMGTNTVYDYNVANVGCGNALTLTLEWDPRTILSEYSSSYYVATYMELLVTEPTGAELPIDE--STIGLHSSGDSY---PIVYTVYGD-NPDA---LGTYKIEVYERGVPLGTE-WTLTAKIRDEEVWVESGVHDSSPSNDITELEIVLDD 1829
+ E G C ++ S G PPCT CP G+V+ G T C+ LV L+LP+++A A+ DA+GGFAGPG ++ L ED +SL+GTF R D +P+S +F Y PD+F+ Q LD STGAF+ VV D+P G S L+LSF ++D A+A G +T + +V+N C +LT+TLEW E S ++L V EP G + +G + D+Y P Y + +P A LG Y+ V TE W LTA++ E VW+E G SS +D + + + D
Sbjct: 133 QEEVAGLCASNSFSSTGAPPCTTCPDGEVS-GTGATACIRQELVGLSLPENIAAAMAADAMGGFAGPGSLTTTPAGTIQ-LTEEDGGSVSLSGTFVR--DDGAALPSSTSVFIYTENTAQPDDFVRGQEALDPSTGAFSTVVTDIPAGSSRLLLSFVVVDPAEALDTAGADTAFALDVSNSACVPSLTITLEWT-----GEISD-------VDLYVVEPGGEVVYFSNRGGDVGFLDNDDTYGFGPENYIIDSALDPAASQVLGEYETYVKLYSGDAATETWRLTARVSGEVVWIEEGDFISSTQSDTFAVSLSVYD 433
BLAST of mRNA_P-canaliculata_contig9999.24108.1 vs. uniprot
Match: D7G3X5_ECTSI (VWFD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3X5_ECTSI) HSP 1 Score: 160 bits (405), Expect = 1.110e-37 Identity = 110/305 (36.07%), Postives = 157/305 (51.48%), Query Frame = 3 Query: 945 ISFDGTPPCTDCPFGDVTISAGQTECVLGALVYLNLPQSVADAIVEDAVGGFAGPGWAVFDDRAWLRVLLAEDANVLSLAGTFHRWEDVDPTIPASAVIFAYIYTDDDPDNFLSSQGTLDTSTGAFTVVVEDVPTGESSLVLSFAILDSADAPPDMGTNTVYDYNVANVGCGNALTLTLEWDPRTILSEYSSSYYVATYMELLVTEPTGAELPIDE--STIGLHSSGDSY---PIVYTVYGD-NPDA---LGTYKIEVYERGVPLGTE-WTLTAKIRDEEVWVESGVHDSSPSNDITELEIVLDD 1829
S G PPCT CP G+V+ G T C+ LV L+LP+++A A+ DA+GGFAGPG ++ L ED +SL+GTF R D +P+S +F Y PD+F+ Q LD STGAF+ VV D+P G S L+LSF ++D A+A G +T + +V+N C +LT+TLEW T + ++L V EP G + +G + D+Y P Y + +P A LG Y+ V TE W LTA++ E VW+E G SS +D + + + D
Sbjct: 271 FSSTGAPPCTTCPDGEVS-GTGATACIRQELVGLSLPENIAAAMAADAMGGFAGPGSLTTTPAGTIQ-LTEEDGGSVSLSGTFVR--DDGAALPSSTSVFIYTENTAQPDDFVRGQEALDPSTGAFSTVVTDIPAGSSRLLLSFVVVDPAEALDTAGADTAFALDVSNSACVPSLTITLEWTGET------------SDVDLYVVEPGGEVVYFSNRGGDVGFLDNDDTYGFGPENYIIDSALDPAASQVLGEYETYVKLYSGDAATETWRLTARVSGEVVWIEEGDFISSTQSDTFAVSLSVYD 559
BLAST of mRNA_P-canaliculata_contig9999.24108.1 vs. uniprot
Match: A0A6H5JLL4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLL4_9PHAE) HSP 1 Score: 113 bits (283), Expect = 9.030e-22 Identity = 94/323 (29.10%), Postives = 150/323 (46.44%), Query Frame = 3 Query: 924 GECQPDTISFDGTPPCTDCPFGDVTISAGQTECVLGALVYLNLP-QSVADAIVEDAVGGFAGPGWAV------------FDDRAWLRVLLAEDANVLSL--AGTFHRWEDVDPTIPASAVIFAYIYTDDDPDNFLSSQGTLDTSTGAFTVVVEDVPTGESSLVLSFAILDSADA----PPDMGTNTVYDYNVANVGCGNALTLTLEWDPRTILSEYSSSYYVATYMELLVTEPTGAELPIDESTIGLHSSGDSYPIVYTVYGDNPDALGTYKIEVYERGVPLGTE--WTLTAKIRDEEVWVESGVHDSSPSNDITELEIVLDD 1829
G C +T S GTPPCTDCP G+V+ G CV + + LP +++ A++ DA GGFAGPG + D + W + L DAN+ S+ +G F R + +P S+ +F YI D PD+ + ++G F++VV DVP G S L LSF I D A+A + +++ ++N+ C +LT+T EW + Y + T + +G ++ G + Y + + D LG YK + +P T W +TA++ E V++ + +DI E ++L D
Sbjct: 760 GLCTTNTFSSTGTPPCTDCPAGEVS-GRGAKVCVPQGVPAVALPSEAIVAAMLADATGGFAGPGSLIDGGVMGGFGVTEVDIQPWGEIELT-DANLGSVYVSGKFVRHDSA--PLPFSSAVFFYIENADQPDDIARGSSKIRGTSGDFSMVVMDVPPGNSRLFLSFVIKDPAEALNVAAEVVPATSIFSLQISNMACVPSLTITHEWIGGNF-APYEITEPDLTTIHSGHGNYSGGVGVFQDNWAGSSPAAKRYILYSGLDVDTSQVLGEYKGRKFLPILPSETPPTWRITARVSGEIVYMYK---EEQVQSDIVEFTVLLTD 1074
BLAST of mRNA_P-canaliculata_contig9999.24108.1 vs. uniprot
Match: A0A6H5KFA6_9PHAE (F5/8 type C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KFA6_9PHAE) HSP 1 Score: 92.4 bits (228), Expect = 3.130e-15 Identity = 59/163 (36.20%), Postives = 88/163 (53.99%), Query Frame = 3 Query: 12 TPVTDLTASANGYDG--RVDGWGCAPSGCLPSNAIDGSLEYPSRWSCVRYLIDGYDSSSDQSEMCELTLDLLEPTNIEEVRVALWKGHQRARSFNIVVDGVVMGVFTSSGTTESFETYELTATLASRVVLQAQHTADDNSWFSLLEIQLMTESEVVTSPPVQP 494
T T +T +A+ +D VD GC P+GC + DG + SRW+C L +C ++ DL ++EVRVAL+ G R R+ N+ VDG ++ +TSSGTT FE+ L T AS V++ Q DD+ W S++E ++M + V +PP P
Sbjct: 368 TQDTTVTTTADLFDPDLAVDN-GCDPAGCTGALTRDGDMTDTSRWACAPSL----------GGVCFISYDLGREFGLDEVRVALYNGDIRVRTINVFVDGALVTTWTSSGTTNGFESIALPDT-ASGTVVELQGVLDDSEWLSIIETEIMVWPQNVVTPPPAP 518
BLAST of mRNA_P-canaliculata_contig9999.24108.1 vs. uniprot
Match: A0A6H5KH45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH45_9PHAE) HSP 1 Score: 91.7 bits (226), Expect = 4.850e-15 Identity = 57/158 (36.08%), Postives = 85/158 (53.80%), Query Frame = 3 Query: 27 LTASANGYDGR--VDGWGCAPSGCLPSNAIDGSLEYPSRWSCVRYLIDGYDSSSDQSEMCELTLDLLEPTNIEEVRVALWKGHQRARSFNIVVDGVVMGVFTSSGTTESFETYELTATLASRVVLQAQHTADDNSWFSLLEIQLMTESEVVTSPPVQP 494
+TA A+ YD R VDG GC PSGC+ N DG L SRWSC L C ++ DL +++E+R+A++KG +R S + VD ++ +TSSGTT+ FE +L+ T VL+ DD+ W S++E ++M + + P P
Sbjct: 178 VTAGASFYDPRLAVDG-GCDPSGCVVDNTRDGDLSTASRWSCAPTL----------GGECTISYDLGTAYDLDELRLAMFKGTERQVSMKVRVDDALVTTWTSSGTTDGFEAIDLSGTWGQ--VLEITGVLDDSEWLSIIEAEIMVLEDGASPMPTTP 322
BLAST of mRNA_P-canaliculata_contig9999.24108.1 vs. uniprot
Match: D7FZZ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZZ4_ECTSI) HSP 1 Score: 89.4 bits (220), Expect = 2.490e-14 Identity = 55/163 (33.74%), Postives = 87/163 (53.37%), Query Frame = 3 Query: 12 TPVTDLTASANGYDGR--VDGWGCAPSGCLPSNAIDGSLEYPSRWSCVRYLIDGYDSSSDQSEMCELTLDLLEPTNIEEVRVALWKGHQRARSFNIVVDGVVMGVFTSSGTTESFETYELTATLASRVVLQAQHTADDNSWFSLLEIQLMTESEVVTSPPVQP 494
T T +T +A+ +D +D GC P+GC + DG SRWSC L + +C ++ DL ++E+RVAL+ G R R+ ++ VDGV++ +TSSGTT+ FE+ + S V+ Q DD+ W S++E ++M + V +PP P
Sbjct: 246 TQDTTVTTTADLFDPALAIDN-GCDPAGCTAALTRDGDTGDASRWSCATNL-------GGEGAVCSISYDLGREFGLDELRVALYNGDIRVRTIDVSVDGVLVATWTSSGTTDGFESIAFPDGV-SGTVINLQGVLDDSEWLSIIETEIMVWPQNVVTPPPTP 399
BLAST of mRNA_P-canaliculata_contig9999.24108.1 vs. uniprot
Match: D7FTH1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTH1_ECTSI) HSP 1 Score: 85.9 bits (211), Expect = 3.190e-13 Identity = 53/145 (36.55%), Postives = 80/145 (55.17%), Query Frame = 3 Query: 27 LTASANGYDGR--VDGWGCAPSGCLPSNAIDGSLEYPSRWSCVRYLIDGYDSSSDQSEMCELTLDLLEPTNIEEVRVALWKGHQRARSFNIVVDGVVMGVFTSSGTTESFETYELTATLASRVVLQAQHTADDNSWFSLLEIQLM 455
+T A+ YD VDG GC PSGC+ N DG L SRWSC L C ++ DL +++EVR+A++KG +R + + VD ++ +TSSGTT+ FE +++ T S VL+ DD+ W S++E ++M
Sbjct: 365 VTVGASLYDPSLAVDG-GCDPSGCVADNTRDGDLSAASRWSCAPKL----------GGECSISYDLGTAYDLDEVRLAMFKGTERQVTMEVRVDDALVITWTSSGTTDGFEAIDMSGT--SGQVLEITGVLDDSEWLSIIEAEIM 496
BLAST of mRNA_P-canaliculata_contig9999.24108.1 vs. uniprot
Match: D8LKE7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKE7_ECTSI) HSP 1 Score: 74.3 bits (181), Expect = 1.120e-10 Identity = 73/281 (25.98%), Postives = 120/281 (42.70%), Query Frame = 3 Query: 1086 AVGGFAGPGWAV------------FDDRAWLRVLLAEDANVLSL--AGTFHRWEDVDPTIPASAVIFAYIYTDDDPDNFLSSQGTLDTSTGAFTVVVEDVPTGESSLVLSFAILDSADA----PPDMGTNTVYDYNVANVGCGNALTLTLEW-------------DPRTILSEYSSSYYVATYMELLVTEPTGAELPIDESTIGLHSSGDSYPIVYTVYGDNPDALGTYKIEVYERGVPLGTE--WTLTAKIRDEEVWVESGVHDSSPSNDITELEIVLDD 1829
A GGFAGPG + D + W + L DAN+ S+ +G F R + +P S+ +F YI D PD+F + ++G +++V DVP G S L LSF I D A+A + +++ +++N+GC +LT+T EW D TI S++ + +G ++ G + Y + + D LG YK ++ V T W TA++ E V++ + +D E ++L D
Sbjct: 10 ATGGFAGPGSLIDGGVMGGFGVTEVDIQPWGEIELT-DANLGSVYVSGKFVRHDSA--ALPFSSAVFFYIENADQPDDFARGSFKIRGASGDLSMLVTDVPPGNSRLFLSFVIEDPAEALNVAAEVVPATSIFSLDISNMGCVPSLTITHEWIGGNFAPYEITEPDLNTINSDHG--------------DVSGGVGVFQDNWAGSSPAAKRYILYSGLDVDTSQVLGEYKGRMFLPFVTSETPPTWRSTARVSGEIVYMYK---EEQVQSDTVEFTVLLTD 270
BLAST of mRNA_P-canaliculata_contig9999.24108.1 vs. uniprot
Match: UPI001061B8BB (polysaccharide lyase family 7 protein n=1 Tax=Paraglaciecola marina TaxID=2500157 RepID=UPI001061B8BB) HSP 1 Score: 59.3 bits (142), Expect = 3.300e-5 Identity = 47/161 (29.19%), Postives = 78/161 (48.45%), Query Frame = 3 Query: 24 DLTASANGYDGRVDGW---------GCAPSGCLPSNAIDGSLEYPSRWSCVRYLIDGYDSSSDQSEMCELTLDLLEPTNIEEVRVALWKGHQRARSFNIVVDGVVMGVFT------SSGTTESFETYELTATLASRVVLQAQHTADDNSWFSLLEIQLMTE 461
+ T+++ G D DG G + S PSNAIDGS + SRW ++S S LTL+L E N+++V ++ +G R+ +F I G +T SSG + E Y++T A +V ++AQ + +SW ++ E+++ E
Sbjct: 149 ESTSTSPGSDTGTDGELTISTAFDDGTSHSNYPPSNAIDGSSAWASRW-----------AASLGSNATNLTLELEEVQNVKQVGISWGRGDSRSHTFEIYARPGTSGNWTKIADTVSSGNSTDIELYDVTDFDAQQVRVKAQSNSAGSSWMNITEVKIYGE 298 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9999.24108.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig9999.24108.1 >prot_P-canaliculata_contig9999.24108.1 ID=prot_P-canaliculata_contig9999.24108.1|Name=mRNA_P-canaliculata_contig9999.24108.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=552bp MCELTLDLLEPTNIEEVRVALWKGHQRARSFNIVVDGVVMGVFTSSGTTEback to top mRNA from alignment at P-canaliculata_contig9999:1912..7384- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig9999.24108.1 ID=mRNA_P-canaliculata_contig9999.24108.1|Name=mRNA_P-canaliculata_contig9999.24108.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=5473bp|location=Sequence derived from alignment at P-canaliculata_contig9999:1912..7384- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig9999:1912..7384- >mRNA_P-canaliculata_contig9999.24108.1 ID=mRNA_P-canaliculata_contig9999.24108.1|Name=mRNA_P-canaliculata_contig9999.24108.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=3312bp|location=Sequence derived from alignment at P-canaliculata_contig9999:1912..7384- (Pelvetia canaliculata dioecious)back to top |