mRNA_P-canaliculata_contig99957.24106.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-canaliculata_contig99957.24106.1 vs. uniprot
Match: A0A7Y2NFT9_9ACTN (PKD domain-containing protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7Y2NFT9_9ACTN) HSP 1 Score: 69.7 bits (169), Expect = 5.740e-11 Identity = 54/155 (34.84%), Postives = 85/155 (54.84%), Query Frame = 1 Query: 37 PVVEVEENNGRTTTAQDIDGAAFNLSANVNIAN-----STTIPHVTILGLGDNSSDFYQFTVPQGADIRIESDSVVGFG-GNVQ----------LRLGSGNNSNVQTSSNGLLIRNN-------VTAGTYTVRVRDLAAGNVPLGASYQLHVSIE 432 PV EVE N+ TAQ++DG ++NL+ + +I + STTIPH++ILG G+N+ D+Y FTV G+ + D +G G+V + L S ++S+ + G + + +AGTY +RVR+ VP GA+Y L VS++ Sbjct: 32 PVPEVEPNDS-IATAQNVDGESWNLNYSPDIGDTSSNTSTTIPHISILGTGNNTFDYYSFTVAAGSFGIFDIDYGETYGPGSVDTWLHLFDSSGVLLASDDDSSTSWGAGGSVDSYDSYIEYTFASAGTYVIRVREYFDYPVPAGATYTLQVSLD 185
BLAST of mRNA_P-canaliculata_contig99957.24106.1 vs. uniprot
Match: A0A5C6EGD1_9BACT (Matrixin n=1 Tax=Rubripirellula reticaptiva TaxID=2528013 RepID=A0A5C6EGD1_9BACT) HSP 1 Score: 63.9 bits (154), Expect = 7.340e-9 Identity = 49/148 (33.11%), Postives = 68/148 (45.95%), Query Frame = 1 Query: 61 NGRTTTAQDIDGAAFNLSANVNIANSTTIPHVTILGLGDNSSDFYQFTVPQGAD--------------IRIESDSVVGFGGNVQLRLGSGNNSNVQTSSNGLLIRNNVTA-GTYTVRVR---------DLAAGNVPLGASYQLHVSIE 432 N TAQ +DG A+ L NV+I NSTT PH TI G+GDN+ D++ FTV D + + + GN SG+ SN+ + I + TA GTY + V + VP G Y+LHVS++ Sbjct: 3185 NDTIATAQSLDGNAWTLQTNVDITNSTTRPHQTINGIGDNTYDYFSFTVQNAGDTATFDIDAGAFDTELHLYDAAGTPLNGNDDAGGDSGSTSNLDS-----FITHTFTAPGTYIIGVAAFPSSTTAGGITGSPVPNGGFYRLHVSLD 3327
BLAST of mRNA_P-canaliculata_contig99957.24106.1 vs. uniprot
Match: A0A5C6E826_9BACT (Cadherin domain-containing protein n=1 Tax=Novipirellula aureliae TaxID=2527966 RepID=A0A5C6E826_9BACT) HSP 1 Score: 63.2 bits (152), Expect = 1.360e-8 Identity = 54/148 (36.49%), Postives = 75/148 (50.68%), Query Frame = 1 Query: 61 NGRTTTAQDIDGAAFNLSANVNIANSTTIPHVTILGLGDNSSDFYQFTVPQ-GADIRIESDSVVGFGGNVQLRLGSGN-------NSNVQTSSNGLL-IRNN------VTAGTYTVRVRDLA--------AGN-VPLGASYQLHVSIE 432 N TAQ++DG ++L + NI NST PH++I LGDN+ D+Y FTV Q GA + D+ F + L SGN + NV NG IR++ T G YT+ V + AGN VP G YQL++S++ Sbjct: 3258 NDSLATAQNLDGEEWSLGFDTNIDNSTARPHLSISALGDNTFDYYSFTVDQAGATAGFDIDAS-SFDTELFLYDSSGNLLAANDDDYNVSPGDNGTTSIRDSYIEYTFATPGVYTIAVGQFSSYDFLGGLAGNPVPFGGVYQLNISLD 3404
BLAST of mRNA_P-canaliculata_contig99957.24106.1 vs. uniprot
Match: A0A5C6A3K0_9BACT (Bifunctional hemolysin/adenylate cyclase n=1 Tax=Stieleria varia TaxID=2528005 RepID=A0A5C6A3K0_9BACT) HSP 1 Score: 63.2 bits (152), Expect = 1.360e-8 Identity = 53/157 (33.76%), Postives = 74/157 (47.13%), Query Frame = 1 Query: 40 VVEVEENNGRTTTAQDIDGAAFNLSANVNIANSTTIPHVTILGLGDNSSDFYQFTVPQGA----DIRIESDSVVGFGGNVQLRLGSGNNSNVQTSSNG-------LLIRNNVTAGTYTVRVR-------------DLAAGNVPLGASYQLHVSIEDH 438 V E E N+ R T AQDIDG + L+ N N+ ST+IPHV+I G GDNS D++ FT G DI S F + L + N+ N+ + G + ++GT+ + V D G + G +Y LHVSIE+H Sbjct: 6028 VAEYEPNDSRLT-AQDIDGENWTLANNPNVEQSTSIPHVSITGTGDNSIDYFSFTANAGDRAIFDIDANSFDTELFLFDEAGMLLAANDDNIGPNDAGQGDGVSSFIDYTFQSSGTFVIGVSGYNSKAENGEIVPDGVGGPIQPGETYTLHVSIENH 6183
BLAST of mRNA_P-canaliculata_contig99957.24106.1 vs. uniprot
Match: A0A2N5KJC2_9ACTN (Uncharacterized protein (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A2N5KJC2_9ACTN) HSP 1 Score: 57.8 bits (138), Expect = 5.770e-8 Identity = 31/62 (50.00%), Postives = 42/62 (67.74%), Query Frame = 1 Query: 28 LDVPVVEVEENNGRTTTAQDIDGAAFNLSANVNIANSTTIPHVTILGLGDNSSDFYQFTVPQ 213 L PV EVE N+ T AQ+ID F+L N I+NSTT+PH T+ G G+++ D+Y FTVP+ Sbjct: 19 LSAPVNEVEPNDS-TAQAQNID-RYFSLDNNPEISNSTTVPHATVNGTGNDTFDYYSFTVPE 78
BLAST of mRNA_P-canaliculata_contig99957.24106.1 vs. uniprot
Match: A0A539DBS3_9BACT (Serralysin (Fragment) n=1 Tax=bacterium TaxID=1869227 RepID=A0A539DBS3_9BACT) HSP 1 Score: 60.1 bits (144), Expect = 1.460e-7 Identity = 45/139 (32.37%), Postives = 66/139 (47.48%), Query Frame = 1 Query: 52 EENNGRTTTAQDIDGAAFNLSANVNIANSTTIPHVTILGLGDNSSDFYQFTVPQGADIRIESDSV-------VGFGGNVQLRLGSGNNSNVQTSSNGLLIRNNVTAGTYTVRVRDLAAGNVPL-------GASYQLHVS 426 + NG TA + GA F+L N IA+STTIPH T++ + ++Y+ TV G + + D + G V+L N S+ S++ L TAGTY ++V +G+ P G SY LHVS Sbjct: 650 DTTNGSIGTAVSLSGA-FDLFENPAIADSTTIPHATVVATSHGNVEYYRVTVTAGETVNFDIDGATFDSTLRLFDGAGVELASNDDNASDGGDSTDSALSHTFATAGTYYIQVGRWVSGSAPFVSGPPPAGQSYTLHVS 787
BLAST of mRNA_P-canaliculata_contig99957.24106.1 vs. uniprot
Match: A0A2E8D4E2_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E8D4E2_9PLAN) HSP 1 Score: 57.4 bits (137), Expect = 1.360e-6 Identity = 50/162 (30.86%), Postives = 78/162 (48.15%), Query Frame = 1 Query: 34 VPVVEVEENNGRTTTAQDIDGAAFNLSANVNIAN-----STTIPHVTILGLGDNSSDFYQFTVPQGADIRIESDSV-----------VGF--GGNVQLRLGSGNNSNVQTSSNGLLIRNNVTAGTYTVRV--------RDLAAGNVP-LGASYQLHVSIEDH 438 +PVV+ E NN Q++DG ++L+++ +I + S +IPH+TILG GD++ D+YQFTV G+ + D+ +GF N S +S+ L +T G YT+ V + G+ P G SY+L VS+E H Sbjct: 4219 IPVVDAEPNN-TLAAPQNLDGERWSLASDRDIGDTSMNTSMSIPHLTILGSGDSTFDYYQFTVSAGSRGIFDIDAANFDTELFLFDELGFELAANDNAASASDGEGGSTVTSDSFLEFTFLTTGLYTLAVGKFDSSVTAGVLGGSTPDPGDSYELQVSVEGH 4379
BLAST of mRNA_P-canaliculata_contig99957.24106.1 vs. uniprot
Match: A0A099K8F1_COLPS (Pseudolysin n=1 Tax=Colwellia psychrerythraea TaxID=28229 RepID=A0A099K8F1_COLPS) HSP 1 Score: 56.6 bits (135), Expect = 2.450e-6 Identity = 50/155 (32.26%), Postives = 77/155 (49.68%), Query Frame = 1 Query: 40 VVEVEENNGRTTTAQDIDGAAFNLSANVNIANSTT-----IPHVTILGLGDNSSDFYQF---TVPQGA--DIRIESDSVVGFGGNVQLR------LGSGNNSNVQTSSNG-------LLIRNNVTAGTYTVRVRDLAAGNVPLGASYQLHVSIED 435 V++ E NN AQ+ID FNL+ + NI + TT +PHV+I+G GD S D+++F T P A D+ S F ++L L S +++N+ +G L+ GTY ++V + +P A+Y LHVSIE+ Sbjct: 674 VIDTESNNS-IAEAQNID-TGFNLNYSENIGDQTTNTSQVMPHVSIIGSGDESYDYFEFSILTAPSQAIFDVDNGSGGTGSFDSYLRLYDEQGNLLSSNDDANLSYGESGSTSGLDSFLMHTFSEVGTYYIKVSRYSDSIIPNNATYTLHVSIEN 826
BLAST of mRNA_P-canaliculata_contig99957.24106.1 vs. uniprot
Match: A0A0P1GKH4_9RHOB (Poly(Beta-D-mannuronate) C5 epimerase 1 n=3 Tax=Tropicibacter naphthalenivorans TaxID=441103 RepID=A0A0P1GKH4_9RHOB) HSP 1 Score: 55.1 bits (131), Expect = 7.990e-6 Identity = 51/169 (30.18%), Postives = 80/169 (47.34%), Query Frame = 1 Query: 40 VVEVEENNGRTTTAQDIDGAAFNLSANVNIANSTTIPHVTILGLGDNSSDFYQFTVPQ-GADIRIESDSVVGFGGNVQLRLGSGNNSNVQ--------------TSSNGLLIRNNVTAGTYTVRVRDLAAGN-----VPLGASYQLHVS----IEDHATPTPTTVTIPA 474 ++E+E NN AQ++DG F L+ N NI NS T+P V I+G G+N++D+Y FTV + G + + D GG+ + N++ + +S + L T GTY + V + VP G +Y+L ++ I T T +TIPA Sbjct: 139 IIEIEPNNS-IAQAQNLDGL-FTLNPNPNILNSDTLPSVNIVGTGNNTADYYAFTVTEAGTSMHFDIDFGSSSGGSFDAYIHLWNSAGARISRSDDSPRDPGSVSSLDSELSYTFSTPGTYYISVGRFPGYSNPDNPVPSGGTYELQITTTAQIGGVGTDEDTALTIPA 305
BLAST of mRNA_P-canaliculata_contig99957.24106.1 vs. uniprot
Match: A0A3D0CGC0_COLSX (Uncharacterized protein (Fragment) n=1 Tax=Colwellia sp. TaxID=56799 RepID=A0A3D0CGC0_COLSX) HSP 1 Score: 55.1 bits (131), Expect = 8.210e-6 Identity = 49/155 (31.61%), Postives = 73/155 (47.10%), Query Frame = 1 Query: 40 VVEVEENNGRTTTAQDIDGAAFNLSANVNIANSTT-----IPHVTILGLGDNSSDFYQF---TVPQGADIRIESDSVVGFGGNVQLRL---------------GSGNNSNVQTSSNGLLIRNNVTAGTYTVRVRDLAAGNVPLGASYQLHVSIED 435 +++ E NN AQ+ID A FNL+ + +I + TT +PHV+I+G GD S D+++F T P A I+ S V + LRL S S +S + L GTY ++V +P A+Y LH+SIE+ Sbjct: 674 IIDTESNNS-IAEAQNID-AGFNLNYSDDIGDQTTNTSQVMPHVSIIGSGDESYDYFEFSIVTAPSRAIFDIDDGSGVSGAFDSYLRLYDDQENLLSSNDDASSSYGESGSTSSLDSFLTYTFSEVGTYYIKVSRYTDSIIPNDATYTLHISIEN 826 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig99957.24106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig99957.24106.1 >prot_P-canaliculata_contig99957.24106.1 ID=prot_P-canaliculata_contig99957.24106.1|Name=mRNA_P-canaliculata_contig99957.24106.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=158bp TAAYGADYWLDVPVVEVEENNGRTTTAQDIDGAAFNLSANVNIANSTTIPback to top mRNA from alignment at P-canaliculata_contig99957:234..707+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig99957.24106.1 ID=mRNA_P-canaliculata_contig99957.24106.1|Name=mRNA_P-canaliculata_contig99957.24106.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=474bp|location=Sequence derived from alignment at P-canaliculata_contig99957:234..707+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig99957:234..707+ >mRNA_P-canaliculata_contig99957.24106.1 ID=mRNA_P-canaliculata_contig99957.24106.1|Name=mRNA_P-canaliculata_contig99957.24106.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=948bp|location=Sequence derived from alignment at P-canaliculata_contig99957:234..707+ (Pelvetia canaliculata dioecious)back to top |