mRNA_P-canaliculata_contig99738.24090.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig99738.24090.1 vs. uniprot
Match: UPI001F575AE5 (hypothetical protein n=1 Tax=Sphingomonas sp. JXJ CY 53 TaxID=2917992 RepID=UPI001F575AE5) HSP 1 Score: 55.8 bits (133), Expect = 6.300e-7 Identity = 43/140 (30.71%), Postives = 63/140 (45.00%), Query Frame = 1 Query: 25 AGSEVALSAIAPATLDTQTDWEALTWTPWEECTNIGEYGVTADEAIYTPVKSGEKVKISTIVDNGELTLEGPFDDTDPALAILQVATSARPIAPVYARVTNSLGNVRYMKGNPRSFKEKPNTAGDILMIMANVSVSGAIL 444
AGS +A+SA APAT+D + ALT+T +C IG G T + + P+K G K K+ D G L D+ D + + A RVT G +RY + + E + A I+M V V ++
Sbjct: 7 AGSAIAISAAAPATMDAA-GYAALTYTEGGQCEKIGTIGSTFTKTEFQPLK-GPKDKLKGSADYGALQPSFALDEEDVGQMLFRSAADDETNKLFSIRVTMQSGALRYFRSRVFGWPETVDGADPIVMATPTVEVCSKVV 144
BLAST of mRNA_P-canaliculata_contig99738.24090.1 vs. uniprot
Match: UPI001F1A5675 (hypothetical protein n=1 Tax=Pseudohongiella sp. O18 TaxID=2904248 RepID=UPI001F1A5675) HSP 1 Score: 50.8 bits (120), Expect = 4.790e-5 Identity = 43/146 (29.45%), Postives = 69/146 (47.26%), Query Frame = 1 Query: 1 MPTNGVASAGSEVALSAIAPATLDTQTDWEALTWTPWEECTNIGEYGVTADEAIYTPVKSGEKVKISTIVDNGELTLEGPFDDT-DPALAILQVATSARPIAPVYARVTNSLGNVRYMKGNPRSFKEKPNTAGDILMIMANVSVSG 435
M T+ + + G+E+A+SA APAT D+ T + ALT+T + GE G + P +G+ K D G L + T D +AIL+ A +AR + V + T G V Y + N + A + + +++SG
Sbjct: 1 MSTDFMPTVGTEIAVSAAAPATHDS-TGFAALTYTDIDVVGEFGETGANDSPVTFVPAGTGDTEKAQGATDYGNENLNMKYTTTADAGVAILRTAHAAR--SKVSVKKTLPDGAVIYYRANCMGVRTVTGGANTPIGLATTLAISG 143 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig99738.24090.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig99738.24090.1 >prot_P-canaliculata_contig99738.24090.1 ID=prot_P-canaliculata_contig99738.24090.1|Name=mRNA_P-canaliculata_contig99738.24090.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=152bp MPTNGVASAGSEVALSAIAPATLDTQTDWEALTWTPWEECTNIGEYGVTAback to top mRNA from alignment at P-canaliculata_contig99738:570..1025+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig99738.24090.1 ID=mRNA_P-canaliculata_contig99738.24090.1|Name=mRNA_P-canaliculata_contig99738.24090.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=456bp|location=Sequence derived from alignment at P-canaliculata_contig99738:570..1025+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig99738:570..1025+ >mRNA_P-canaliculata_contig99738.24090.1 ID=mRNA_P-canaliculata_contig99738.24090.1|Name=mRNA_P-canaliculata_contig99738.24090.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=912bp|location=Sequence derived from alignment at P-canaliculata_contig99738:570..1025+ (Pelvetia canaliculata dioecious)back to top |