mRNA_P-canaliculata_contig99738.24089.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-canaliculata_contig99738.24089.1 vs. uniprot
Match: A0A431IPZ5_9ACTN (HK97 gp10 family phage protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A431IPZ5_9ACTN) HSP 1 Score: 57.8 bits (138), Expect = 1.980e-9 Identity = 22/38 (57.89%), Postives = 31/38 (81.58%), Query Frame = 1 Query: 1 NSVPYIRRLEYGWSRQSPAGMLRINIARWDDIVAQGVR 114 N +PY +RLEYGWS+Q+PAGM+R+ +A +D IVA G + Sbjct: 89 NGLPYAQRLEYGWSKQAPAGMVRVTVAEFDSIVAAGAQ 126
BLAST of mRNA_P-canaliculata_contig99738.24089.1 vs. uniprot
Match: A0A291AX91_9CAUD (Putative tail protein n=12 Tax=root TaxID=1 RepID=A0A291AX91_9CAUD) HSP 1 Score: 54.3 bits (129), Expect = 4.780e-8 Identity = 19/35 (54.29%), Postives = 30/35 (85.71%), Query Frame = 1 Query: 1 NSVPYIRRLEYGWSRQSPAGMLRINIARWDDIVAQ 105 N++PY RLEYGWS+Q+P GM+R+NIAR++ ++ + Sbjct: 92 NNLPYAERLEYGWSKQAPTGMIRVNIARFNTLLTE 126
BLAST of mRNA_P-canaliculata_contig99738.24089.1 vs. uniprot
Match: A0A0K2FIJ9_9CAUD (Uncharacterized protein n=2 Tax=Viruses TaxID=10239 RepID=A0A0K2FIJ9_9CAUD) HSP 1 Score: 53.9 bits (128), Expect = 6.750e-8 Identity = 19/33 (57.58%), Postives = 28/33 (84.85%), Query Frame = 1 Query: 1 NSVPYIRRLEYGWSRQSPAGMLRINIARWDDIV 99 N++PY RLEYGWS+Q+P GM+R+NIAR+ ++ Sbjct: 92 NNLPYAERLEYGWSKQAPVGMVRVNIARFQQLI 124
BLAST of mRNA_P-canaliculata_contig99738.24089.1 vs. uniprot
Match: A0A291AX54_9CAUD (Uncharacterized protein n=1 Tax=Salmonella phage St161 TaxID=2024311 RepID=A0A291AX54_9CAUD) HSP 1 Score: 51.2 bits (121), Expect = 7.500e-7 Identity = 18/33 (54.55%), Postives = 29/33 (87.88%), Query Frame = 1 Query: 1 NSVPYIRRLEYGWSRQSPAGMLRINIARWDDIV 99 N++PY RLEYGWS+Q+P G++R+NIAR++ ++ Sbjct: 92 NNLPYAERLEYGWSKQAPQGIVRVNIARFNTLL 124
BLAST of mRNA_P-canaliculata_contig99738.24089.1 vs. uniprot
Match: A0A2I7RB56_9CAUD (Coil containing protein n=1 Tax=Vibrio phage 1.151.O._10N.222.46.B1 TaxID=1881430 RepID=A0A2I7RB56_9CAUD) HSP 1 Score: 50.8 bits (120), Expect = 8.810e-7 Identity = 21/38 (55.26%), Postives = 29/38 (76.32%), Query Frame = 1 Query: 1 NSVPYIRRLEYGWSRQSPAGMLRINIARWDDIVAQGVR 114 N VPYI LEYG S+Q+PAGM+R+++ +WD IV + R Sbjct: 82 NIVPYILALEYGHSKQAPAGMVRLSVNQWDRIVKKATR 119
BLAST of mRNA_P-canaliculata_contig99738.24089.1 vs. uniprot
Match: A0A542LGC8_9BURK (Uncharacterized protein n=1 Tax=Herbaspirillum sp. SJZ107 TaxID=2572881 RepID=A0A542LGC8_9BURK) HSP 1 Score: 50.4 bits (119), Expect = 2.400e-6 Identity = 21/42 (50.00%), Postives = 30/42 (71.43%), Query Frame = 1 Query: 1 NSVPYIRRLEYGWSRQSPAGMLRINIARWDDI---VAQGVRA 117 N+VPY +RLE GWSRQ+P G++ I + W++I V GV+A Sbjct: 106 NTVPYAKRLEQGWSRQAPVGVVAITVVEWNNIIENVVNGVKA 147
BLAST of mRNA_P-canaliculata_contig99738.24089.1 vs. uniprot
Match: UPI0004622E02 (hypothetical protein n=3 Tax=Pseudomonas TaxID=286 RepID=UPI0004622E02) HSP 1 Score: 49.3 bits (116), Expect = 4.100e-6 Identity = 22/33 (66.67%), Postives = 28/33 (84.85%), Query Frame = 1 Query: 1 NSVPYIRRLEYGWSRQSPAGMLRINIARWDDIV 99 NS+PYI RLEYG+S+Q+P+GM+R NIAR IV Sbjct: 90 NSLPYIDRLEYGYSQQAPSGMVRRNIARVQRIV 122
BLAST of mRNA_P-canaliculata_contig99738.24089.1 vs. uniprot
Match: A0A0A1IUN5_9CAUD (Uncharacterized protein n=3 Tax=Abidjanvirus TaxID=1982095 RepID=A0A0A1IUN5_9CAUD) HSP 1 Score: 48.5 bits (114), Expect = 8.280e-6 Identity = 21/36 (58.33%), Postives = 30/36 (83.33%), Query Frame = 1 Query: 1 NSVPYIRRLEY-GWSR-QSPAGMLRINIARWDDIVA 102 N++PY R+E+ GWSR ++P GM+R N+ARWD+IVA Sbjct: 89 NNLPYAHRIEFDGWSRYKAPQGMVRKNVARWDEIVA 124
BLAST of mRNA_P-canaliculata_contig99738.24089.1 vs. uniprot
Match: B9TMR4_RICCO (Uncharacterized protein n=1 Tax=Ricinus communis TaxID=3988 RepID=B9TMR4_RICCO) HSP 1 Score: 47.4 bits (111), Expect = 1.190e-5 Identity = 16/33 (48.48%), Postives = 25/33 (75.76%), Query Frame = 1 Query: 1 NSVPYIRRLEYGWSRQSPAGMLRINIARWDDIV 99 NS+PY +RLEYGWS+Q+P GM+R+ + + + Sbjct: 54 NSLPYAKRLEYGWSKQAPGGMVRLAVQNYSQTI 86
BLAST of mRNA_P-canaliculata_contig99738.24089.1 vs. uniprot
Match: A0A857J820_9BURK (HK97 gp10 family phage protein n=1 Tax=Xylophilus rhododendri TaxID=2697032 RepID=A0A857J820_9BURK) HSP 1 Score: 47.8 bits (112), Expect = 1.560e-5 Identity = 18/37 (48.65%), Postives = 27/37 (72.97%), Query Frame = 1 Query: 1 NSVPYIRRLEYGWSRQSPAGMLRINIARWDDIVAQGV 111 NS+PY +RLEYGWS+Q+PAGM+R A + + + + Sbjct: 91 NSLPYAQRLEYGWSKQAPAGMVRTTTAEYGTYLRKAI 127 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig99738.24089.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig99738.24089.1 >prot_P-canaliculata_contig99738.24089.1 ID=prot_P-canaliculata_contig99738.24089.1|Name=mRNA_P-canaliculata_contig99738.24089.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=44bp NSVPYIRRLEYGWSRQSPAGMLRINIARWDDIVAQGVRAAGGS*back to top mRNA from alignment at P-canaliculata_contig99738:1..132+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig99738.24089.1 ID=mRNA_P-canaliculata_contig99738.24089.1|Name=mRNA_P-canaliculata_contig99738.24089.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=132bp|location=Sequence derived from alignment at P-canaliculata_contig99738:1..132+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig99738:1..132+ >mRNA_P-canaliculata_contig99738.24089.1 ID=mRNA_P-canaliculata_contig99738.24089.1|Name=mRNA_P-canaliculata_contig99738.24089.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=264bp|location=Sequence derived from alignment at P-canaliculata_contig99738:1..132+ (Pelvetia canaliculata dioecious)back to top |