mRNA_P-canaliculata_contig9971.24086.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig9971.24086.1 vs. uniprot
Match: A0A6H5JF50_9PHAE (LNR domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF50_9PHAE) HSP 1 Score: 238 bits (608), Expect = 3.140e-61 Identity = 151/423 (35.70%), Postives = 234/423 (55.32%), Query Frame = 2 Query: 20 KTLLAQKTSFTSLSGDSFEDSMARQVWVGEESVNDVLDPR-------RTVTITWGEVCNVETFLLKVTSSDPGNGTLSVTKSIPCVPGASVDICVVKTEVIPLDDEKPKLVSTDAEGRVRSRALVAQTGRPLPAAGKVVMDAGRTSS---EKRHLHSTTKIDVMYLYTQGGKDLLGGISDAQMQTTLATALTTSNDAMTNSDI-DLTFSLVYVGRLPYKETS---TSSSTV-----LENLSTDVDVADLRDTHNADLVQMAGNVGFSCGIAKLFSGSSADGFSAVNPLCIDFLSHTHEIGHNFGCYHNRGNSNKHTDYAHGYRHCHSTDPYRTIMASF---C-------PDPDVPRINWFSNPDVVVLDKVTGTNHNDCARVIEENMLRIADFRPLNRCVDQNDPNYKCNGLRNGTVLELQWC 1201
+T++A++TS++S+ G+ D AR+ W+GE V+DP RTV++TW + C++ETFLLK+ S + +G+ S+ S+PC G+S +IC+V+ + D+ S + S+ ++ + + + + R S R L TT IDV+ Y+ GISDAQ+ T + + T N A+TNS I DL + LV+V LPY + + S + L+ L+ + V DLR+ + DLVQ+ G +CG+ +F+G++ GFS V C D SHTHEI HN GCYH+R NS +Y HGYR+C +DPYRTIM+ + C DP VP++N+FSNP+V L+K TGT D AR IEE+M+ +++FR D ++ C+ + +++ C
Sbjct: 198 ETVIAERTSYSSIDGNVLPDGNARKTWLGE-----VVDPEPSTNSIPRTVSMTWTDPCDIETFLLKLVSRN-SDGSTSIATSVPCSAGSSSEICMVELQKFFYDESDAVDTSQSSSSSSTSKYQGSRMLKERRVSTTFMEEGSRWSQGIPSDRSLQGTTVIDVLIFYSPEAASS-EGISDAQLLTRIVEGMVTLNQAITNSAIADLEYRLVHVAELPYSQMTYDPIDSDDIDLEPELDALAANSAVNDLRNEYQGDLVQLVGYFPGTCGLGYIFNGNAEFGFSLVGSNCFDNFSHTHEIAHNMGCYHDRDNSETQDEYRHGYRYCTGSDPYRTIMSYYQNGCGGDPTPEADPIVPQVNYFSNPEVTYLNKPTGTATADNARCIEESMVAVSNFRA--------DGDFICSDDGDACAVDIDCC 605
BLAST of mRNA_P-canaliculata_contig9971.24086.1 vs. uniprot
Match: A0A6H5JRC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRC1_9PHAE) HSP 1 Score: 222 bits (566), Expect = 1.610e-56 Identity = 147/416 (35.34%), Postives = 225/416 (54.09%), Query Frame = 2 Query: 5 VGLTRKTLLAQKTSFTSLSGDSFEDSMAR-------------QVWVGEESVNDVLDPR-------RTVTITWGEVCNVETFLLKVTSSDPGNGTLSVTKSIPCVPGASVDICVVKTEVIPLDDEKPK---------LVSTDAEGRVRSRALVAQTGRPLPAAGKVVMDAGRTSSEKRHLHSTTKIDVMYLYTQGGKDLLGGISDAQMQTTLATALTTSNDAMTNSDI-DLTFSLVYVGRLPYKETSTSSST------VLENLSTDVDVADLRDTHNADLVQMAGNVGFSCGIAKLFSGSSADGFSAVNPLCIDFLSHTHEIGHNFGCYHNRGNSNKHTDYAHGYRHCHSTDPYRTIMASF---C-------PDPDVPRINWFSNPDVVVLDKVTGTNHNDCARVIEENMLRIADFR 1114
+ +T +T++A++TS++S+ G D + R Q W+GE V+DP RTV++TW + C+ E+FLLK+ S + +G+ S+ S+PC G+S +IC+V+ E+ D+ + + D R+ V+ T G + + S R L TT IDV+ +Y+ GI++AQ+ T + + T N A+TNS I L + LV V LPY + + S L+ L+ + +V DLR+ + DLVQ+ G +CG+ +F+G +A GFS V+ C D SHTHEI HN GCYH++ NS+ Y HG+R+C DPYRTIM+ + C DP VPR+N+FSNP+V L+K TGT D AR IE++M+ +++FR
Sbjct: 2 LSVTSQTVIAERTSYSSIDGSVLSDGITRKDELTGDGSHGLFQTWLGE-----VVDPEPSANSIPRTVSMTWTDPCDTESFLLKLVSRN-ADGSTSIFTSVPCSAGSSNEICMVELEMFFHDESETEDTXXXXXXXXXXKDQGSRMLKERRVSTT---YTEEGSL---RSQGMSSDRRLQGTTVIDVLIVYSPEAA-YARGIAEAQLLTRIVEGMVTLNQAITNSGIAGLEYRLVQVAELPYSQMAYIPSDDIDLKPELDALAANSNVTDLRNQYQGDLVQLVGYFPGTCGLGYIFNGDAAFGFSLVDSNCFDNFSHTHEIAHNMGCYHDKNNSDTQHAYRHGWRYCEGADPYRTIMSYYHNGCGGDPTSEDDPIVPRVNYFSNPNVTYLNKSTGTAAADNARCIEDSMVAVSEFR 404
BLAST of mRNA_P-canaliculata_contig9971.24086.1 vs. uniprot
Match: D8LMP2_ECTSI (Peptidyl-Asp metallopeptidase. metallo peptidase. MEROPS family M72 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMP2_ECTSI) HSP 1 Score: 125 bits (314), Expect = 2.870e-29 Identity = 74/169 (43.79%), Postives = 98/169 (57.99%), Query Frame = 2 Query: 467 KIDVMYLYTQGGKDLLGGISDAQMQTTLATALTTSNDAMTNSDI-DLTFSLVYVGRLPYKETSTSSST------VLENLSTDVDVADLRDTHNADLVQMAGNVGFSCGIAKLFSGSSADGFSAVNPLCIDFLSHTHEIGHNFGCYHNRGNSNKHTDYAHGYRHCHSTDP 952
KIDV+ Y+ GISDAQ+ T + + T N A+TNS I DL + LV+V LPY + + + L+ L+ D DV DLRD + DLVQ+ G +CG+ +F+G++ GFS V C D SHTHEI HN GCYH+R NS + HGYR+C TDP
Sbjct: 12 KIDVLIFYSPEAASS-EGISDAQLLTRIVEGMVTLNQAITNSAIADLEYRLVHVAELPYSQMTYDPNDDIDLGPELDALAADSDVDDLRDQYQGDLVQLVGYFPGTCGLGYVFNGNAEYGFSLVGSNCFDNFSHTHEIAHNMGCYHDRLNSGPQDAFRHGYRYCTGTDP 179
BLAST of mRNA_P-canaliculata_contig9971.24086.1 vs. uniprot
Match: D8LLU0_ECTSI (PKD domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLU0_ECTSI) HSP 1 Score: 124 bits (311), Expect = 9.640e-27 Identity = 99/326 (30.37%), Postives = 152/326 (46.63%), Query Frame = 2 Query: 20 KTLLAQKTSFTSLSGDSFEDSMARQVWVGEESVNDVLDPR-------RTVTITWGEVCNVETFLLKVTSSDPGNGTLSVTKSIPCVPGASVDICVVKTEVIPLD-DEKPKLVSTDAEG--------RVRSRALVAQTGRPLPAAGKVVMDAGRTSSEKRHLHSTTKIDVMYLYTQGGKDLLGGISDAQMQTTLATALTTSNDAMTNSDIDLTFSLVYVGRLPYKET---STSSSTVLENLSTDVDVADLRDTHNADLVQMAGNVGFSCGIAKLFSGSSADGFSAVNPLCIDFLSHTHEIGHNFGCYHNRGNSNKH-TDYAHGYRHC 937
+T++A++TS++S+ G+ F D R+ W+GE V+DP RTV++TW C VE+FLL V S + +G+ S+ +SIPC G+S ++C+V+ V+ D D +S D + ++ Q GR L G+ S LHS + G ++L G + +LPY + +T L+ ++ + VA LRD H ADLV + G +CG +F+ + A GFS ++ +C + THEIGHN GC H+R NSN T Y HG R+C
Sbjct: 110 ETVIAERTSYSSIDGNIFPDGETRKTWMGE-----VVDPEPPAGSAPRTVSMTWTNPCGVESFLLTVVSHN-NDGSTSIVRSIPCAAGSSSEVCMVELAVVFNDGDSAVDSISADNDDDDFESMTLENPGESVEGQEGRMLKTIRAPTKSVGKES-----LHSRG--------SPGSRELQAGNT----------------------------------QLPYDQMLDDTTDYGPELDAMTGNAAVAALRDEHEADLVLLVGYFPNTCGRGWIFNFNEALGFSLMDSICFSNWTQTHEIGHNLGCRHDRDNSNTGMTAYGHGLRYC 382
BLAST of mRNA_P-canaliculata_contig9971.24086.1 vs. uniprot
Match: A0A7S2LJR7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LJR7_9STRA) HSP 1 Score: 112 bits (281), Expect = 1.390e-22 Identity = 83/230 (36.09%), Postives = 116/230 (50.43%), Query Frame = 2 Query: 470 IDVMYLYTQGGKDLLGGIS-----DAQMQTTLA----TALTTSNDAMTNSDIDLTFSLVYVGRLPYKETSTSSSTVLENLSTDVD-----VADLRDTHNADLVQMAGNVGFSCGIAKLFSGSSADGFSAVNPLCIDFLSHTHEIGHNFGCYHNRGNSNKHTDYAHGYRHCHSTDPYRTIMASFCPDPDVPRINWFSNPDVVVL--DKVTGTNHNDCARVIEENMLRIADF 1111
IDVM +YT+ G++ A ++T+ A+ +N + NS+ + +LV+ + Y E S ST L+ TD D V RDTH AD+V + G G S A+ FS N I + HE+GHN+GCYHNR NSN +YAHGY+ T +RTI+A C + PR+NW+S+ D + +K G N NDCAR I E + DF
Sbjct: 179 IDVMVVYTEEAMCEAAGVALSSCNQASHKSTIEGQINLAVANNNVGLANSNTGTSLNLVHQDMVDYTE-SGDLSTDLDRFRTDGDGHMDTVHTHRDTHKADIVALITANGSGIGYV---GASKANMFSITNWGYIPGHTFAHELGHNWGCYHNRANSNTQVNYAHGYQSPDET--FRTILAYNCANSYCPRVNWYSSSDTSITYQNKAIGDNVNDCARKIRERRQTVTDF 402
BLAST of mRNA_P-canaliculata_contig9971.24086.1 vs. uniprot
Match: D8LCC0_ECTSI (Peptidyl-Asp metalloendopeptidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCC0_ECTSI) HSP 1 Score: 110 bits (276), Expect = 2.060e-21 Identity = 87/278 (31.29%), Postives = 125/278 (44.96%), Query Frame = 2 Query: 320 PKLVSTDAEGRVRSRALVA---------QTGRPLPAAGKVVMDAGRTSSEKRHLHSTTKIDVMYLYTQGGKDLLGG----ISDAQMQTTLATALTTSNDAMTNSDIDLTFSLVYVGRLPYKETSTSSSTVLENLSTDVDVADLRDTHNADLVQMAGNVGFSCGIAKLFSGSSADGFSAVNPLCIDFLSHTHEIGHNFGCYHNRGNSNKHTDYAHGYRHCHSTDPYRTIMASFCPDPDVPRINWFSNPDVVVLDKVTGTNHNDCARVIEENMLRIADFR 1114
P + + D + R+ + LVA + G ++ +V M +GR L +TT+IDVM LYT G +++ QM+T + TA T+NDA+ +S I T ++V+V Y + ++ F G G+S V+ C+D LSH HEIGHN G HNR +++ DYAH R+C PYRTIMA PR+ FS D K GT D ARVIEE++ + +FR
Sbjct: 189 PDIDAKDEDVRLLNEYLVASAPEQEVFHERGVRRLSSAEVQMPSGRV------LTATTEIDVMVLYTPAAMISSGTAGTLLTNQQMETEIITAYATANDALADSGISATINVVHVAEARYVMATPRAA---------------------------------------FEGF---GYSIVHTHCLDNLSHIHEIGHNMGANHNREDTSSEHDYAHAQRYCTGDTPYRTIMAYETGCLQAPRVAMFSTQDKTYASKSLGTTSTDNARVIEESLSTVVNFR 418
BLAST of mRNA_P-canaliculata_contig9971.24086.1 vs. uniprot
Match: D8LCP8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCP8_ECTSI) HSP 1 Score: 108 bits (270), Expect = 4.680e-21 Identity = 90/275 (32.73%), Postives = 136/275 (49.45%), Query Frame = 2 Query: 20 KTLLAQKTSFTSLSGDSFEDSMARQVWVGEESVNDVLDPR--------RTVTITWGEVCNVETFLLKVTSSDPGNGTLSVTKSIPCVPGAS-VDICVVKTEVIPLDDEKPKLVSTDAEGRVRSRALVAQTGRPLPAAGK-------------VVMDAGRTSSEKRHLHSTTKIDVMYLYTQGGKDLLGGISDAQMQTTLATALTTSNDAMTNSDIDLTFSLVYVGRLPY-KETSTSSSTVLENLSTDVDVADLRDTHNADLVQMAGNVGFSCGIA 775
+T++A +TS+T +SG++F + R++W G V+DP R V++TWGEVC+VETF LKV S G S KS+PC G S V++C+V+ L ++P V ++ G+ S A+ + G + G M LYT L+G +SD QM+T ++ A++T N NS+I + + VY GRLPY ++ + SST L L D V LRD + AD+V + + +CGIA
Sbjct: 193 ETIIANRTSYTVVSGETFTGGVGRRIWNGV-----VIDPEPDAGEAFPRGVSMTWGEVCDVETFSLKV-SKHTVEGNTSAVKSVPC--GLSGVEVCLVEVAFDFLPGKEPLRVGVNSTGQ--STAVRRRLGDGILGGGSRDRHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMVLYTNMSLVLMG-VSDVQMETMVSAAISTVNVGFENSNIGIETTTVYKGRLPYYQDCADDSSTKLSALREDEGVNALRDEYGADIVLLVDYLTDACGIA 456
BLAST of mRNA_P-canaliculata_contig9971.24086.1 vs. uniprot
Match: A0A7S2PP87_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PP87_9STRA) HSP 1 Score: 102 bits (253), Expect = 6.050e-21 Identity = 65/157 (41.40%), Postives = 83/157 (52.87%), Query Frame = 2 Query: 662 STVLENLSTDVD-----VADLRDTHNADLVQMAGNVGFSCGIAKLFSGSSADGFSAVNPLCIDFLSHTHEIGHNFGCYHNRGNSNKHTDYAHGYRHCHSTDPYRTIMASFCPDPDVPRINWFSNPDVVVL--DKVTGTNHNDCARVIEENMLRIADF 1111
ST L+ TD D V RDTH AD+V + G G S A+ FS N I + HE+GHN+GCYHNR NSN +YAHGY+ T +RTI+A C + PR+NW+S+ D + +K G N NDCAR I E + DF
Sbjct: 11 STDLDRFRTDGDGHMDTVHTHRDTHKADIVALITANGSGIGYV---GASKANMFSITNWGYIPGHTFAHELGHNWGCYHNRANSNTQVNYAHGYQSPDET--FRTILAYNCANSYCPRVNWYSSSDTSITYQNKAIGDNVNDCARKIRERRQTVTDF 162
BLAST of mRNA_P-canaliculata_contig9971.24086.1 vs. uniprot
Match: A0A353CCN4_9BACT (Uncharacterized protein n=1 Tax=Blastocatellia bacterium TaxID=2052146 RepID=A0A353CCN4_9BACT) HSP 1 Score: 105 bits (263), Expect = 4.850e-20 Identity = 89/255 (34.90%), Postives = 121/255 (47.45%), Query Frame = 2 Query: 452 LHSTTKIDVMYLYTQGGKDLLGGISDAQMQTTLATALTTSNDAMTNSDIDLTFSLVYVGRLPYKETSTSSSTVLENLSTDVDVADLRDTHNADLVQMAGNVGFSCGIAKLFS--GSSADGFSAVNPLC-IDFLSHTHEIGHNFGCYHNRGN-SNKHTDYAHGYRHCHSTDPYRTIMASFCPDPD-VPRINWFSNPDVVVLDKVTGT-NHNDCARVIEENMLRIADFRPLNRCVDQNDPNYKCNGLRNGTVLELQW 1198
+ S +IDVM +YT K+ +GG DAQ QT A+ SN A NS + +V+ + ET SS+ L L + V LR+THNADLV M G V CGI L G S G++ C + LS HE+GHN G HN N S Y++G+ + +RT+M+ P P R +FSNPDV TG N D AR + E +A++R + + N + G LQW
Sbjct: 171 IDSGDRIDVMVVYTTATKNAVGG--DAQAQTLAQQAIDASNTAYINSGVRQRLRMVHATEYVFVETGNSSAD-LSTLRNNATVQALRNTHNADLVAMIGEVSDVCGIGYLSGTPGGSEFGYTITARSCAVGNLSFAHELGHNMGSQHNPENGSGGFAPYSYGH---YVNGVFRTVMSYTNPCPSGCTRRPYFSNPDVYYNGFATGIFNARDNARSLNETADNMANYRYSGSSIQMTNLNGFRAEIPRGIRRTLQW 419
BLAST of mRNA_P-canaliculata_contig9971.24086.1 vs. uniprot
Match: A0A7V9IDX9_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Blastocatellia bacterium TaxID=2052146 RepID=A0A7V9IDX9_9BACT) HSP 1 Score: 101 bits (251), Expect = 1.400e-18 Identity = 89/260 (34.23%), Postives = 125/260 (48.08%), Query Frame = 2 Query: 368 LVAQTGRPLPAAGKVVMDAGRTS-----SEKRHLHSTTKIDVMYLYTQGGKDLLGGISDAQMQTTLATALTTSNDAMTNSDIDLTFSLVYVGRLPYKETSTSSSTVLENLSTDVDVADLRDTHNADLVQMAGNVGFSCGIAKLFS--GSSADGFSAVNPLC-IDFLSHTHEIGHNFGCYHNRGNSNKHTDYAHGYRHCHSTDPYRTIMASF--CPDPDVPRINWFSNPDVVVLDKVTGT-NHNDCARVIEENMLRIADFR 1114
L+ R P G V+D ++ S + + S +IDV+ +YT K+ LGG DAQ+QT +A+ ++N NS + LV+ + ET SS+ L L + V LR+THNADLV M G V CGIA L G A G+S C I L+ HE+GHN +HN N+ Y + Y H YRT+M+ C + V R W SNP+V + TG N D R + +A++R
Sbjct: 145 LIELDQRLFPECGGEVIDEMASTDAVAPSPESSIDSGDRIDVLVVYTTATKNFLGG--DAQVQTFAQSAVDSTNSTYINSKVRQRIRLVHAAEYEFVETGNSSND-LTTLRANATVQALRNTHNADLVAMLGEVSDVCGIAYLVGTPGGQASGYSLTARSCAIGNLTFAHELGHNMASHHNPENAGS-ALYPYSYGHW-IDGQYRTVMSYINPCTNGCVRRPYW-SNPNVRFNNIPTGVENLRDNVRSLNNTANNVANYR 398 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9971.24086.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig9971.24086.1 >prot_P-canaliculata_contig9971.24086.1 ID=prot_P-canaliculata_contig9971.24086.1|Name=mRNA_P-canaliculata_contig9971.24086.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=458bp MARQVWVGEESVNDVLDPRRTVTITWGEVCNVETFLLKVTSSDPGNGTLSback to top mRNA from alignment at P-canaliculata_contig9971:2..9983- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig9971.24086.1 ID=mRNA_P-canaliculata_contig9971.24086.1|Name=mRNA_P-canaliculata_contig9971.24086.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=9982bp|location=Sequence derived from alignment at P-canaliculata_contig9971:2..9983- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig9971:2..9983- >mRNA_P-canaliculata_contig9971.24086.1 ID=mRNA_P-canaliculata_contig9971.24086.1|Name=mRNA_P-canaliculata_contig9971.24086.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=2748bp|location=Sequence derived from alignment at P-canaliculata_contig9971:2..9983- (Pelvetia canaliculata dioecious)back to top |