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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Bacteria |
| Seed ortholog score | 93.6 |
| Seed ortholog evalue | 7.8e-17 |
| Seed eggNOG ortholog | 999611.KI421504_gene2768 |
| EggNOG OGs | 1R9WP@1224,281NA@191028,28P0W@1,2U5XJ@28211,2ZBXD@2 |
| Best tax level | Leisingera |
| Best eggNOG OG | NA|NA|NA |
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Model size | 417 |
| Cds size | 417 |
| Stop | 1 |
| Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817356.154302-CDS-P-canaliculata_contig99663:431..848 | 1622817356.154302-CDS-P-canaliculata_contig99663:431..848 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig99663 432..848 - |
| 1693495244.0885525-CDS-P-canaliculata_contig99663:431..848 | 1693495244.0885525-CDS-P-canaliculata_contig99663:431..848 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig99663 432..848 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig99663.24082.1 >prot_P-canaliculata_contig99663.24082.1 ID=prot_P-canaliculata_contig99663.24082.1|Name=mRNA_P-canaliculata_contig99663.24082.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=139bp
AADFDVSGLIESKNNHNVQAISDDYVILLASMEETLIPKDSKSPWQGATG
PCGGAVEIKQGKIKGDGFCSFTDNENDKFVISWTAQSMNEQGGPIGVWEL
TAGTGKYANASASGEYNDVPSEDSTRSSITIIGQLTIP* back to topmRNA from alignment at P-canaliculata_contig99663:432..848- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-canaliculata_contig99663.24082.1 ID=mRNA_P-canaliculata_contig99663.24082.1|Name=mRNA_P-canaliculata_contig99663.24082.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=417bp|location=Sequence derived from alignment at P-canaliculata_contig99663:432..848- (Pelvetia canaliculata dioecious)
GCAGCGGATTTTGACGTATCTGGCTTAATTGAAAGCAAAAATAATCATAA
CGTTCAAGCGATCTCCGATGATTATGTTATTTTGCTTGCCTCAATGGAGG
AAACACTGATACCGAAAGACAGTAAGAGTCCGTGGCAAGGTGCTACCGGA
CCTTGCGGTGGTGCTGTTGAAATCAAGCAAGGAAAAATAAAGGGTGATGG
TTTCTGCTCATTCACAGACAATGAAAATGACAAGTTTGTAATCTCTTGGA
CTGCTCAGTCAATGAACGAACAAGGTGGTCCAATTGGAGTGTGGGAGCTA
ACTGCCGGCACTGGCAAATATGCTAATGCATCAGCCAGTGGGGAGTACAA
TGACGTCCCGAGTGAGGACTCCACACGGAGTTCTATCACAATTATTGGCC
AGCTAACAATTCCATAG back to topCoding sequence (CDS) from alignment at P-canaliculata_contig99663:432..848- >mRNA_P-canaliculata_contig99663.24082.1 ID=mRNA_P-canaliculata_contig99663.24082.1|Name=mRNA_P-canaliculata_contig99663.24082.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=834bp|location=Sequence derived from alignment at P-canaliculata_contig99663:432..848- (Pelvetia canaliculata dioecious)
GCAGCGGATTTTGACGTATCTGGCTTAATTGAAAGCAAAAATAATCATAA
CGTTCAAGCGATCTCCGATGATTATGTTATTTTGCTTGCCTCAATGGAGG
AAACACTGATACCGAAAGACAGTAAGAGTCCGTGGCAAGGTGCTACCGGA
CCTTGCGGTGGTGCTGTTGAAATCAAGCAAGGAAAAATAAAGGGTGATGG
TTTCTGCTCATTCACAGACAATGAAAATGACAAGTTTGTAATCTCTTGGA
CTGCTCAGTCAATGAACGAACAAGGTGGTCCAATTGGAGTGTGGGAGCTA
ACTGCCGGCACTGGCAAATATGCTAATGCATCAGCCAGTGGGGAGTACAA
TGACGTCCCGAGTGAGGACTCCACACGGAGTTCTATCACAATTATTGGCC
AGCTAACAATTCCATAGGCAGCGGATTTTGACGTATCTGGCTTAATTGAA
AGCAAAAATAATCATAACGTTCAAGCGATCTCCGATGATTATGTTATTTT
GCTTGCCTCAATGGAGGAAACACTGATACCGAAAGACAGTAAGAGTCCGT
GGCAAGGTGCTACCGGACCTTGCGGTGGTGCTGTTGAAATCAAGCAAGGA
AAAATAAAGGGTGATGGTTTCTGCTCATTCACAGACAATGAAAATGACAA
GTTTGTAATCTCTTGGACTGCTCAGTCAATGAACGAACAAGGTGGTCCAA
TTGGAGTGTGGGAGCTAACTGCCGGCACTGGCAAATATGCTAATGCATCA
GCCAGTGGGGAGTACAATGACGTCCCGAGTGAGGACTCCACACGGAGTTC
TATCACAATTATTGGCCAGCTAACAATTCCATAG back to top
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