Homology
BLAST of mRNA_P-canaliculata_contig99627.24076.1 vs. uniprot
Match:
UPI0013EA2E4C (hypothetical protein n=1 Tax=unclassified Paludisphaera TaxID=2624067 RepID=UPI0013EA2E4C)
HSP 1 Score: 78.2 bits (191), Expect = 3.310e-16
Identity = 36/88 (40.91%), Postives = 55/88 (62.50%), Query Frame = 1
Query: 31 IKLKIHVVFYKDSLGDWIAHCLEMDLCGHGASQVSAVKMLNDAIAMQIEFSLAGDNPENIFSPADAKFFQMFAEGDDKLVGNLEVTIE 294
++L + +VFY++ W+AHCLE DL G G ++ A+ L DA +Q E S DNP N FSPA+ ++F+M+A G D ++V+ E
Sbjct: 7 LRLSLRIVFYRED-ESWVAHCLETDLVGVGETKREAMATLWDATTLQFEASREWDNPANFFSPAEGRYFEMYARGRDVATAEMDVSAE 93
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig99627.24076.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 3.31e-16 / Id = 40.91 Sequence UPI0013EA2E4C
Match Name E-value Identity Description
UPI0013EA2E4C 3.310e-16 40.91 hypothetical protein n=1 Tax=unclassified Paludisp... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation Exons 1 Model size 369 Cds size 348 Stop 1 Start 1
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622817355.541757-CDS-P-canaliculata_contig99627:491..839 1622817355.541757-CDS-P-canaliculata_contig99627:491..839 Pelvetia canaliculata dioecious CDS P-canaliculata_contig99627 492..839 - 1693495243.6007557-CDS-P-canaliculata_contig99627:491..839 1693495243.6007557-CDS-P-canaliculata_contig99627:491..839 Pelvetia canaliculata dioecious CDS P-canaliculata_contig99627 492..839 -
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622817355.5571184-UTR-P-canaliculata_contig99627:839..860 1622817355.5571184-UTR-P-canaliculata_contig99627:839..860 Pelvetia canaliculata dioecious UTR P-canaliculata_contig99627 840..860 - 1693495243.61382-UTR-P-canaliculata_contig99627:839..860 1693495243.61382-UTR-P-canaliculata_contig99627:839..860 Pelvetia canaliculata dioecious UTR P-canaliculata_contig99627 840..860 -
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig99627.24076.1
>prot_P-canaliculata_contig99627.24076.1 ID=prot_P-canaliculata_contig99627.24076.1|Name=mRNA_P-canaliculata_contig99627.24076.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=116bp
MPEIKLKIHVVFYKDSLGDWIAHCLEMDLCGHGASQVSAVKMLNDAIAMQ back to top mRNA from alignment at P-canaliculata_contig99627:492..860-
Legend: UTR CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig99627.24076.1 ID=mRNA_P-canaliculata_contig99627.24076.1|Name=mRNA_P-canaliculata_contig99627.24076.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=369bp|location=Sequence derived from alignment at P-canaliculata_contig99627:492..860- (Pelvetia canaliculata dioecious)AAACATATTATTTCCAAAATT ATGCCCGAAATAAAGTTAAAAATCCACGT
TGTCTTTTACAAAGATTCACTTGGCGATTGGATTGCACACTGCTTGGAAA
TGGACCTTTGCGGTCACGGTGCCTCACAGGTTTCTGCGGTTAAAATGCTA
AACGATGCGATTGCAATGCAGATAGAGTTTTCTCTTGCGGGCGACAATCC
TGAGAATATTTTCTCACCAGCCGATGCAAAATTCTTTCAGATGTTTGCCG
AAGGCGATGATAAACTTGTCGGCAATCTTGAAGTGACTATCGAAGAAGAA
TATGATTCTTTTAAGTTTCAGGGGTCTGAGTCTAGGCAGTATTCCGGCGG
AACAACACTGGCTTTTTAA back to top Coding sequence (CDS) from alignment at P-canaliculata_contig99627:492..860-
>mRNA_P-canaliculata_contig99627.24076.1 ID=mRNA_P-canaliculata_contig99627.24076.1|Name=mRNA_P-canaliculata_contig99627.24076.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=696bp|location=Sequence derived from alignment at P-canaliculata_contig99627:492..860- (Pelvetia canaliculata dioecious) back to top