mRNA_P-canaliculata_contig99598.24074.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig99598.24074.1
Unique NamemRNA_P-canaliculata_contig99598.24074.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig99598.24074.1 vs. uniprot
Match: A0A518EU49_9BACT (D-inositol-3-phosphate glycosyltransferase n=1 Tax=Planctomycetes bacterium Poly30 TaxID=2528018 RepID=A0A518EU49_9BACT)

HSP 1 Score: 181 bits (459), Expect = 2.360e-52
Identity = 105/180 (58.33%), Postives = 124/180 (68.89%), Query Frame = 1
Query:    1 RDILVLGAIRGSRLPLDALAAFGSLASRAPSVRLLFVGRPGDASAPFSEALERSPLR---SRVRWIQDPEEARMPACVAGASVLLHLTQDEASPVTPLEAARMGLTVVASRIPAFEEAFGRSAR--FVDSADPEGIAAALEAALEDAASSTARAGLKKIAAPFTWRASAEAHLAAWQTML 525
            RDILVLGAIR +R P++ALAAF  L  R    RLLFVGRPGDA+A   EA+    +R   + VRWI +PEEARMP CVAGA++LLHL +DEASPVTPLEAARMGL ++AS++PAFEE  G SA   FV  +DP  IA ALE  L   +    R      A PFTW A+A AH AAW+ ML
Sbjct:  219 RDILVLGAIRAARFPVEALAAFDVLRQRRADARLLFVGRPGDAAAALQEAVGHLVVRHGQAAVRWIDEPEEARMPRCVAGATLLLHLAEDEASPVTPLEAARMGLPLIASKLPAFEEVLGESAGSWFVSESDPVEIADALELGLAAGSDPEFRRQRADSAKPFTWEAAALAHCAAWKRML 398          
BLAST of mRNA_P-canaliculata_contig99598.24074.1 vs. uniprot
Match: A0A523PV71_9BACT (Glycosyltransferase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A523PV71_9BACT)

HSP 1 Score: 125 bits (313), Expect = 4.280e-31
Identity = 73/178 (41.01%), Postives = 102/178 (57.30%), Query Frame = 1
Query:    7 ILVLGAIRGSRLPLDALAAFGSLASRAPSVRLLFVGRPGDASAPFSEALERSPLRSRVRWIQDPEEARMPACVAGASVLLHLTQDEASPVTPLEAARMGLTVVASRIPAFEEAFGRSARFVDSAD---PEGIAAALEAALEDAASSTARAGLKKIAAPFTWRASAEAHLAAWQTMLCQ 531
            +LVLGA+R  R PL  L A  +L +      L+F+GRPGDA+     AL  SP    VRWI+ P E  MPA +A A+VL+HL  DE + VTPLEA  +G+ VVA+R+PAFEEA G  A  + + D   P  +A A+  A+   +   A A  + +A  + W  +A   L  W+ +L +
Sbjct:  188 LLVLGAVRSERHPLAVLRALEALRAGGVEAELVFIGRPGDAAGDLRRALRASPAGDVVRWIESPVERDMPALLASATVLVHLADDEGTAVTPLEAFSLGVPVVATRLPAFEEALGGGAELLPAPDTHAPAALAEAIARAIRGRSDGPAAAHRRALAEAYPWDRNARETLGLWRRILAR 365          
BLAST of mRNA_P-canaliculata_contig99598.24074.1 vs. uniprot
Match: A0A521KJJ2_9BACT (Glycosyltransferase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A521KJJ2_9BACT)

HSP 1 Score: 106 bits (264), Expect = 5.620e-24
Identity = 70/180 (38.89%), Postives = 95/180 (52.78%), Query Frame = 1
Query:    4 DILVLGAIRGSRLPLDALAAFGSLASRAPSVRLLFVGRPGDASAPFSEALERSPLRSRVRWIQDPEEARMPACVAGASVLLHLTQDEASPVTPLEAARMGLTVVASRIPAFEEAFGRSARFVDS---ADPEGIAAALEAALEDAASSTARAGLKKIAAPFTWRASAEAHLAAWQTMLCQP 534
             +LVLGA+R  R     L AF  LA+R  + RLLFVG  G    P         +R  V WI    E +MP  +A ++ L H++  E +PVTPLEA   G  V+AS +PAF+EA G +A +  +   AD   +AA LE A+E    + A    + IAA FTW   A   +AAW+ +   P
Sbjct:  191 QVLVLGALRSGRGHAALLEAFARLAARGRAARLLFVGPDGIEREPLFARAAALGVRESVEWIGHAIEEQMPRVMAESAALAHVSDGELTPVTPLEAFASGTAVLASPLPAFQEALGDAATWAPAEAVADAGALAALLERAIESGLDARAAEARRAIAARFTWAEHARKTVAAWRRVAADP 370          
BLAST of mRNA_P-canaliculata_contig99598.24074.1 vs. uniprot
Match: A0A7V3K6D5_9CHLR (Glycosyltransferase family 1 protein n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7V3K6D5_9CHLR)

HSP 1 Score: 63.5 bits (153), Expect = 1.630e-8
Identity = 58/179 (32.40%), Postives = 83/179 (46.37%), Query Frame = 1
Query:    1 RDILVLGAIRGSRLPLDALAAFGSLASRAPSVR--LLFVGRPGDASAPFSEALERSPLRSRVRWIQDPEEARMPACVAGASVLLHLTQDEASPVTPLEAARMGLTVVASRIPAFEEAFGRSARFVDSADPEGIAAALEAALEDAASSTARAGLKKI-AAPFTWRASAEAHLAAWQTMLC 528
            R IL LG +   +     + A+  L    P     L+ VGR G  S     A+  + L  RV    D  +  +PA ++ A++    +  E   + PLEA   G+ VVAS   +  E  G +A  V   DPEGIA A+ A L+D  +  A A    + A+ F W  SAEA L A+  + C
Sbjct:  288 RYILSLGTLEPRKNFEGLIRAYADLLRLRPETEEDLVLVGRRGWMSEGIGRAIAETGLGERVHIRTDVADEELPAVLSMATLFAFPSWYEGFGLPPLEAMACGVPVVASDRGSLREVLGNAACTVAPEDPEGIARAMAALLDDEPARRALAACGPVQASRFDWGRSAEALLDAYHRLAC 466          
BLAST of mRNA_P-canaliculata_contig99598.24074.1 vs. uniprot
Match: UPI001E432FE3 (glycosyltransferase family 4 protein n=2 Tax=Luteimonas sp. D4P002 TaxID=2901869 RepID=UPI001E432FE3)

HSP 1 Score: 57.8 bits (138), Expect = 1.770e-6
Identity = 41/135 (30.37%), Postives = 67/135 (49.63%), Query Frame = 1
Query:    7 ILVLGAIRGSRLPLDALAAFGSLASRAPSVRLLFVGRPGDASAPFSEALERSPLR-SRVRWIQDPEEARMPACVAGASVLLHLTQDEASPVTPLEAARMGLTVVASRIPAFEEAFGRSARFVDSADPEGIAAALE 408
            +L +G I   +   DAL    +L  R  +  L+ VGR G +       L + PL  + + W++D  +  + A    A+ LL L++ E   +  +EAA +GL ++A  +P F E  G    F+D+  P   AAA+E
Sbjct:  667 LLSVGTIEPRKGHADALRICQALWDRGEAANLVIVGRRGWSEDALERQLRQHPLNGTALFWLEDANDVELAALYVHATALLALSKAEGFGLPLVEAASIGLPILARPLPVFREVLGTYPHFLDADAPCSWAAAVE 801          
BLAST of mRNA_P-canaliculata_contig99598.24074.1 vs. uniprot
Match: A0A7Y9ZEI9_9ACTN (Glycosyltransferase-like protein n=3 Tax=Nocardioides aromaticivorans TaxID=200618 RepID=A0A7Y9ZEI9_9ACTN)

HSP 1 Score: 54.3 bits (129), Expect = 2.170e-5
Identity = 59/178 (33.15%), Postives = 82/178 (46.07%), Query Frame = 1
Query:    1 RDILVLGAIRGSRLPLDALAAFGSLASRAPS---VRLLFVGRPGDASAPFSEALERSPLRSRVRWI-QDP------EEARMPACVAGASVLLHLTQDEASPVTPLEAARMGLTVVASRIPAFEEAFGRSARFVDSADPEGIAAALEAALEDAASSTARAGLKKIAAPFTWRASAEAHL 504
            R +L LG I   +  +D L A   L +  P+   VRL+F    G     F     R+    R   +  DP       +  +PA V  A+ L  ++  E   +  +EA   G+ VVA  +P   E FG    +   AD  GIAAAL   L   A     AG +++AA +TWRA+AEAHL
Sbjct:  190 RYVLALGGIEPRKGSIDLLEAHALLVASDPALADVRLVF----GGGETLFDYRDYRAAFEQRAAALGTDPVVLGPVPDDELPALVGEAAALGFVSTKEGFGLAAMEALAAGVPVVARDLPILREVFGEVVAYA--ADVPGIAAALGTVLH--APPPPVAG-EELAASYTWRAAAEAHL 358          
BLAST of mRNA_P-canaliculata_contig99598.24074.1 vs. uniprot
Match: A0A368T894_9ACTN (Glycosyl transferase family 1 n=1 Tax=Marinitenerispora sediminis TaxID=1931232 RepID=A0A368T894_9ACTN)

HSP 1 Score: 52.8 bits (125), Expect = 7.790e-5
Identity = 52/163 (31.90%), Postives = 75/163 (46.01%), Query Frame = 1
Query:   25 IRGSRLPLDALAAFGSLASRAPSVRLLFVGRPGDASAPFSEALERSPLRSRVRWIQDPEEARMPACVAGASVLLHLTQDEASPVTPLEAARMGLTVVASRIPAFEEAFGR---SARFVDSADPEGIAAALEAALEDAASST--ARAGLKKIAAPFTWRASAEA 498
            ++G    L A+A  G+       V L  V RP     P    ++   LR RV ++   E+A +   +A A V +  +  E   +  +EA   G  +VASR  A  E  G    + R V   DPE +AAA+ A L+DAA       A  +++   FTWRA A A
Sbjct:  246 LKGVATLLRAVAKLGT----ERDVSLTVVSRP-TPDGPTDRLVDELSLRDRVTFVSGIEDAELARVLATAEVAVVPSLYEGFSLPAVEAMACGTPLVASRAGALPEVVGEDGAAGRLVTPGDPEELAAAVGALLDDAAERERMGAAAWRRVEERFTWRAVAAA 403          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig99598.24074.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A518EU49_9BACT2.360e-5258.33D-inositol-3-phosphate glycosyltransferase n=1 Tax... [more]
A0A523PV71_9BACT4.280e-3141.01Glycosyltransferase n=1 Tax=Planctomycetes bacteri... [more]
A0A521KJJ2_9BACT5.620e-2438.89Glycosyltransferase n=1 Tax=Planctomycetes bacteri... [more]
A0A7V3K6D5_9CHLR1.630e-832.40Glycosyltransferase family 1 protein n=1 Tax=Anaer... [more]
UPI001E432FE31.770e-630.37glycosyltransferase family 4 protein n=2 Tax=Lutei... [more]
A0A7Y9ZEI9_9ACTN2.170e-533.15Glycosyltransferase-like protein n=3 Tax=Nocardioi... [more]
A0A368T894_9ACTN7.790e-531.90Glycosyl transferase family 1 n=1 Tax=Mariniteneri... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig99598contigP-canaliculata_contig99598:285..839 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score68.2
Seed ortholog evalue4.7e-09
Seed eggNOG ortholog1121015.N789_12365
Preferred namewbpX
KEGG koko:K12993
EggNOG free text desc.Glycosyl transferases group 1
EggNOG OGs1N5HW@1224,1RPPH@1236,1X68G@135614,COG0438@1,COG0438@2
COG Functional cat.M
CAZyGT4
Best tax levelXanthomonadales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01003,ko01005
Hectar predicted targeting categoryother localisation
Exons1
Model size555
Cds size555
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817355.4778605-CDS-P-canaliculata_contig99598:284..8391622817355.4778605-CDS-P-canaliculata_contig99598:284..839Pelvetia canaliculata dioeciousCDSP-canaliculata_contig99598 285..839 +
1693495243.5680122-CDS-P-canaliculata_contig99598:284..8391693495243.5680122-CDS-P-canaliculata_contig99598:284..839Pelvetia canaliculata dioeciousCDSP-canaliculata_contig99598 285..839 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig99598.24074.1prot_P-canaliculata_contig99598.24074.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig99598 285..839 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig99598.24074.1

>prot_P-canaliculata_contig99598.24074.1 ID=prot_P-canaliculata_contig99598.24074.1|Name=mRNA_P-canaliculata_contig99598.24074.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=185bp
RDILVLGAIRGSRLPLDALAAFGSLASRAPSVRLLFVGRPGDASAPFSEA
LERSPLRSRVRWIQDPEEARMPACVAGASVLLHLTQDEASPVTPLEAARM
GLTVVASRIPAFEEAFGRSARFVDSADPEGIAAALEAALEDAASSTARAG
LKKIAAPFTWRASAEAHLAAWQTMLCQPPPPSAG*
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mRNA from alignment at P-canaliculata_contig99598:285..839+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig99598.24074.1 ID=mRNA_P-canaliculata_contig99598.24074.1|Name=mRNA_P-canaliculata_contig99598.24074.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=555bp|location=Sequence derived from alignment at P-canaliculata_contig99598:285..839+ (Pelvetia canaliculata dioecious)
CGGGATATCCTCGTCCTAGGTGCGATCCGGGGTAGCCGACTGCCACTGGA CGCCCTGGCCGCCTTTGGGTCGCTGGCGTCACGCGCCCCCAGTGTCCGGC TTCTGTTCGTGGGGCGGCCCGGCGATGCCAGCGCGCCCTTCTCCGAAGCG CTGGAGAGATCCCCCCTGCGATCCCGCGTGCGCTGGATTCAGGATCCCGA GGAGGCGCGCATGCCGGCCTGCGTCGCCGGTGCAAGCGTGCTCCTGCACC TGACCCAGGATGAGGCGTCTCCGGTGACCCCCTTGGAGGCCGCGCGCATG GGGTTGACGGTCGTAGCGAGCCGGATACCCGCCTTTGAGGAGGCCTTCGG CCGCTCGGCTCGATTCGTCGACTCGGCCGACCCGGAGGGCATCGCCGCGG CCCTTGAGGCGGCCCTCGAGGACGCCGCGTCGAGCACCGCCCGCGCGGGC TTGAAGAAGATCGCGGCACCCTTTACATGGCGCGCGAGCGCAGAAGCGCA CCTCGCCGCATGGCAAACTATGCTCTGCCAGCCCCCGCCTCCTTCCGCGG GGTGA
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Coding sequence (CDS) from alignment at P-canaliculata_contig99598:285..839+

>mRNA_P-canaliculata_contig99598.24074.1 ID=mRNA_P-canaliculata_contig99598.24074.1|Name=mRNA_P-canaliculata_contig99598.24074.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1110bp|location=Sequence derived from alignment at P-canaliculata_contig99598:285..839+ (Pelvetia canaliculata dioecious)
CGGGATATCCTCGTCCTAGGTGCGATCCGGGGTAGCCGACTGCCACTGGA
CGCCCTGGCCGCCTTTGGGTCGCTGGCGTCACGCGCCCCCAGTGTCCGGC
TTCTGTTCGTGGGGCGGCCCGGCGATGCCAGCGCGCCCTTCTCCGAAGCG
CTGGAGAGATCCCCCCTGCGATCCCGCGTGCGCTGGATTCAGGATCCCGA
GGAGGCGCGCATGCCGGCCTGCGTCGCCGGTGCAAGCGTGCTCCTGCACC
TGACCCAGGATGAGGCGTCTCCGGTGACCCCCTTGGAGGCCGCGCGCATG
GGGTTGACGGTCGTAGCGAGCCGGATACCCGCCTTTGAGGAGGCCTTCGG
CCGCTCGGCTCGATTCGTCGACTCGGCCGACCCGGAGGGCATCGCCGCGG
CCCTTGAGGCGGCCCTCGAGGACGCCGCGTCGAGCACCGCCCGCGCGGGC
TTGAAGAAGATCGCGGCACCCTTTACATGGCGCGCGAGCGCAGAAGCGCA
CCTCGCCGCATGGCAAACTATGCTCTGCCAGCCCCCGCCTCCTTCCGCGG
GGTGACGGGATATCCTCGTCCTAGGTGCGATCCGGGGTAGCCGACTGCCA
CTGGACGCCCTGGCCGCCTTTGGGTCGCTGGCGTCACGCGCCCCCAGTGT
CCGGCTTCTGTTCGTGGGGCGGCCCGGCGATGCCAGCGCGCCCTTCTCCG
AAGCGCTGGAGAGATCCCCCCTGCGATCCCGCGTGCGCTGGATTCAGGAT
CCCGAGGAGGCGCGCATGCCGGCCTGCGTCGCCGGTGCAAGCGTGCTCCT
GCACCTGACCCAGGATGAGGCGTCTCCGGTGACCCCCTTGGAGGCCGCGC
GCATGGGGTTGACGGTCGTAGCGAGCCGGATACCCGCCTTTGAGGAGGCC
TTCGGCCGCTCGGCTCGATTCGTCGACTCGGCCGACCCGGAGGGCATCGC
CGCGGCCCTTGAGGCGGCCCTCGAGGACGCCGCGTCGAGCACCGCCCGCG
CGGGCTTGAAGAAGATCGCGGCACCCTTTACATGGCGCGCGAGCGCAGAA
GCGCACCTCGCCGCATGGCAAACTATGCTCTGCCAGCCCCCGCCTCCTTC
CGCGGGGTGA
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