Homology
BLAST of mRNA_P-canaliculata_contig9958.24071.1 vs. uniprot
Match:
D8LN70_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN70_ECTSI)
HSP 1 Score: 122 bits (307), Expect = 2.580e-25
Identity = 216/721 (29.96%), Postives = 280/721 (38.83%), Query Frame = 1
Query: 1 LGGLTLGGFRVVGDD-------LADPKAGESDDQGHRQGGXXXGRTPGPTKGPRYPLEASTLERVP-------PQDKVLLEANA-----------------VEAPPGGRERYSLMYDG------AVGGYAQRNHRAIPGADS------------FSVHEDVLRTSGSMGADGKAGAEGSG--------------SRGRLGRRGN--DMPNLSGSLEGNLSAADFVTSASATTRASFRQHPPQKDEAEVMSGDSFS----LENWGIMQYGLTLEDPVTDADVDGGSEVAGEAGENRLRHSREIP--------DGNGGGDRXXXXXXXXXXXXXXXXXS---------ASVAMMMDSLSLRDSRSRDGRYPGEAGTRDGASATSRSFLYGNSVGAGDGGRPCVEERRRTGEDVVLAGDFGLAALPGAETGADNADFSFLGTRSGPIFDPGVDARVPLLHQQHKQHVLHSHRSNA--LPLHPRRVVGRSPSIAPMRRRLPPPSEALESEKFAPAPGGA---NV-GRSSDAWQGSTGSGGXXXXXVNGVTSSGTGLLRWSFPPPSGIGGHVGGPSADDEEHVGVTRLSGFEQ-------DGGGTSARQVGGGSGGRGGSGECRDVRGEWGGNGMRPVLAIDYGVSRRLFCDADKGHGGGDGIGD-------------GTARSKQPSLSGSVDSHQFAMMRGQHRSFEESAPTVRSDYDDRGAAAG 1827
+G L+LGGFR VG L+ A D R+ G GRTPGPT+GPRYPLE STL + ++++++ PGG L Y+G Y QR + G+ S F+ D G + S G L R G+ D+ L S + L+AA + A+ + P E + G S + ++NWGI+QYGLTLEDPV D S A + + + R S ++ +G GGG XXXXXXXX ASVAMMM SLS+ +S AG R GA GN +G G GG E+ V A D+ L P G FL +S A PLHPRR VG SPS+ P RRLP + + A NV S+D GS +G V G +GLLRWSFPPP G+ GH GG + + + G SG + A VGGG G GE + G+ + ++PV A +YGVSRRL D G GGG IG+ G + LSGSVDSHQ+A++RGQ R E R +D A AG
Sbjct: 175 IGSLSLGGFRSVGGGPFQDRAPLSHQAASGDDRSSTRRQGRGGGRTPGPTRGPRYPLEDSTLGHNSGALGGGAETEGMMMQSSEDFSHSXXXXXXXXXXXXXXVIPGGLH-LPLAYEGYGXXXXXXXAYEQRGDASSYGSRSAXXXXXXXXGEPFAHAHDQRLHRGXXXXXXXXXXQXXXXXXXXXXXXXXXXRSEGGLPRPGSNGDVTGLRRSFDSGLAAA--AGGHQLPSMATEKPPPGAAAEGNAVHGGSSTAGPPVDNWGILQYGLTLEDPVAGHGSDAPSAAAADGSQRQQRLSEKMDSAGRSTAAEGRGGGGGQFSXXXXXXXXRGSGRLGGQGASSXXXASVAMMMGSLSIAGDQSA-------AGQRYGA---------GNELGRGGGGGGQPED------GVNFADDYDLVGPP---DGXXXXXXXFLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSTAPRTPLHPRRGVGGSPSLTPQPRRLPHDVGGFPASGASAATXXXXXXNVTAMSTDHLHGSGSNG-----AVGGGAPLASGLLRWSFPPP-GMPGHPGGVTGEGDGAGGGPMPSGLGRLXXXXXXXXXXXXAGDVGGGGGDERSGGERGE--GQHWSSTVQPVAA-EYGVSRRL----DYGEGGG--IGEEQXXXXAGARDRRGGXXXRGGGLSGSVDSHQYALLRGQRRELEYRGGLSRGGGEDGAAGAG 852
BLAST of mRNA_P-canaliculata_contig9958.24071.1 vs. uniprot
Match:
A0A6H5KNA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNA0_9PHAE)
HSP 1 Score: 86.7 bits (213), Expect = 6.090e-14
Identity = 105/314 (33.44%), Postives = 132/314 (42.04%), Query Frame = 1
Query: 1042 FSFLGTRSGPIFDPGVDARVPLLHQQHKQHVLHSHR------SNALPLHPRRVVGRSPSIAPMRRRLP------PPSEALESE------------------------------------KFAPAPGGANV-GRSSDAWQGSTGSGGXXXXXVNGVTSSGTGLLRWSFPPPSGIGGHVGGPSADDEEH------VGVTRLSGFEQ-DGGGTSARQVGGGSGGRGGSGECRDVRGEWGGNGMRPVLAIDYGVSRRLFCDADKGHGGG----DGIGDGTARSKQPS----------LSGSVDSHQFAMMRGQHRSFE 1773
F FL T ++PG D R PL QQH + P+ PRR VG SPS+ P RRRLP P S + + GG NV S+D GS +G + G +GLLRWSFPPP G+ H GG + + + G+ RL+GF G SA VGGG G GE + G+ + ++PV A +YGVSRRL D G GGG G GD AR + LSGSVDSHQ+A++RGQ R E
Sbjct: 583 FGFLDTPPPSNYEPGHDDRAPLQQQQHXXXXXXXXXXXXXXXAPLAPILPRRGVGGSPSLTPQRRRLPHDVGGFPVSGSAATSGGGGGNVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGGGNVTAMSTDHLHGSGSNG-----ALGGGAPLASGLLRWSFPPP-GVSEHPGGVTGEGDGAGGGPVPSGLGRLNGFGALSGVSVSAGDVGGGGGDERSGGERGE--GQHWSSTLQPVAA-EYGVSRRL----DYGEGGGIGEDQGGGDTGARDMRGGGRGRGGRGGGLSGSVDSHQYALLRGQRRELE 883
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9958.24071.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 2.58e-25 / Id = 29.96 Expect = 6.09e-14 / Id = 33.44 Sequence D8LN70_ECTSI A0A6H5KNA0_9PHAE
Match Name E-value Identity Description
D8LN70_ECTSI 2.580e-25 29.96 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more] A0A6H5KNA0_9PHAE 6.090e-14 33.44 Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation Exons 3 Model size 1829 Cds size 1827 Stop 0 Start 0
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622817355.2509036-CDS-P-canaliculata_contig9958:2998..3052 1622817355.2509036-CDS-P-canaliculata_contig9958:2998..3052 Pelvetia canaliculata dioecious CDS P-canaliculata_contig9958 2999..3052 - 1693495243.3998587-CDS-P-canaliculata_contig9958:2998..3052 1693495243.3998587-CDS-P-canaliculata_contig9958:2998..3052 Pelvetia canaliculata dioecious CDS P-canaliculata_contig9958 2999..3052 - 1622817355.2646933-CDS-P-canaliculata_contig9958:3764..5477 1622817355.2646933-CDS-P-canaliculata_contig9958:3764..5477 Pelvetia canaliculata dioecious CDS P-canaliculata_contig9958 3765..5477 - 1693495243.4097242-CDS-P-canaliculata_contig9958:3764..5477 1693495243.4097242-CDS-P-canaliculata_contig9958:3764..5477 Pelvetia canaliculata dioecious CDS P-canaliculata_contig9958 3765..5477 - 1622817355.2790866-CDS-P-canaliculata_contig9958:6454..6514 1622817355.2790866-CDS-P-canaliculata_contig9958:6454..6514 Pelvetia canaliculata dioecious CDS P-canaliculata_contig9958 6455..6514 - 1693495243.4191813-CDS-P-canaliculata_contig9958:6454..6514 1693495243.4191813-CDS-P-canaliculata_contig9958:6454..6514 Pelvetia canaliculata dioecious CDS P-canaliculata_contig9958 6455..6514 -
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig9958.24071.1
>prot_P-canaliculata_contig9958.24071.1 ID=prot_P-canaliculata_contig9958.24071.1|Name=mRNA_P-canaliculata_contig9958.24071.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=609bp
LGGLTLGGFRVVGDDLADPKAGESDDQGHRQGGGGGGRTPGPTKGPRYPL back to top mRNA from alignment at P-canaliculata_contig9958:2998..6514-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig9958.24071.1 ID=mRNA_P-canaliculata_contig9958.24071.1|Name=mRNA_P-canaliculata_contig9958.24071.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=3517bp|location=Sequence derived from alignment at P-canaliculata_contig9958:2998..6514- (Pelvetia canaliculata dioecious)CTGGGAGGGCTGACTCTCGGAGGCTTTCGAGTGGTTGGAGACGATCTCGC
AGATCCGAAG GTGAAAATAAGTTTGATGAGCAGGTTCTGTCTGTTGTTGT
CATGTTTCCACACGACCGCCTGCCTGCCCGCGAAAATGGTGGCTGCGGAG
ATAGGGTTGCTGGATCCGCTGGTGCGGCCCGCAGGGTTGTCTTGGAGCGG
AGTCATACGCGAGGATTGTAGCATGCTGTCGCCCTGCCTGTACGTTTAGC
ATGTTTCGCTTCCCGCGCTCGCGACTGCGGCGCAGCCGTCAAAATCCAGA
TCATGTTCGGACGTCGCTTTCCACTATCTCATGAAAACCTGTGTGGTGGT
CTCGTACGAGATCCTTTGCCCAACGAGGCACCCAAGAGTATGAGATTTCA
ATGCCCGCGTTTCCCCCCCCTGCCCCCATTGCTTGGAACATTGAGAATAG
CGAAGTCGGCCTTGATTTAAAGAGATGCACATCACCTTACTCTCCGCCTA
GCCTAGAAAAAGAGAGGCGCAAAAATATGGCCCATGGTGACACCTGAACA
GGCAACGCCTTTTAGTTGAAATACCTTGAGAACTAGAACTATTGGCCCTG
TGCCGGAGGACTCTCGGCAGTGAACGTCATTGGTACGCATCTGCGTGACC
TGATCGACTCGGGGTTGTCCCGATGGAATTCCGTGAGTAAGCACCAGATT
CAGCCTATTAATGCTATTAATACTATTAATAGAGTGTGGAGAATGAGCGG
GCTAACGCGGGACGGGATGACCGAATCCGTCTCGCGAGACCAAGTTCTCA
GGCGCGAACGGAGACAGGGAAATTCCCTGTTGCAGCTGACCACGAGCAGG
ATTGGCAGCCATACCCGGTTGATCCATTCTCTGTTAGAAGTGGTGACCTT
ACATACATACGGTACATAACACACTAATTTTTAATATACACTGCTTCAGT
ACAGAACCCAGTTTCAAACTTGCGGCGTGATTTTGGTCGCGATTCACACT
CATCGTGGCATCATTATTTTGTCTCCGCCGGGCGCAGGCGGGAGAAAGCG
ACGACCAGGGCCATAGGCAAGGGGGCGGCGGTGGCGGCAGGACCCCTGGG
CCGACGAAGGGTCCGCGTTACCCCCTAGAGGCCTCCACCCTCGAACGCGT
GCCTCCACAGGACAAGGTTCTCCTCGAGGCGAACGCCGTCGAGGCACCTC
CCGGCGGAAGGGAGAGATACAGCCTGATGTACGACGGTGCTGTCGGCGGA
TACGCCCAGCGAAACCATCGAGCGATACCCGGGGCGGACTCGTTCTCTGT
TCACGAGGATGTGCTAAGAACCAGCGGAAGCATGGGCGCGGACGGAAAGG
CAGGTGCGGAGGGCAGCGGTAGCCGAGGGAGGCTGGGGCGGCGTGGCAAC
GACATGCCGAACCTGAGTGGATCGTTGGAAGGGAACCTTTCTGCCGCTGA
TTTCGTTACATCGGCGTCGGCGACGACTCGGGCTTCTTTTCGGCAGCACC
CGCCGCAGAAGGACGAGGCTGAAGTTATGTCTGGAGACTCTTTTTCTCTG
GAAAATTGGGGGATCATGCAGTACGGGCTAACGCTCGAAGACCCGGTGAC
TGATGCAGATGTTGATGGAGGCTCAGAGGTCGCTGGCGAGGCCGGCGAGA
ATCGTCTCCGCCACTCGAGGGAGATCCCGGATGGCAACGGAGGAGGGGAC
AGAGGCGGTAACGGTGGCGACTCAGGGGGGGGAAGCGAAGCGTTGTCGTC
ATCTTCCGCTAGCGTCGCAATGATGATGGACTCGCTTTCTCTCCGTGACT
CCCGCTCGCGCGACGGGCGGTACCCCGGCGAGGCAGGGACGAGAGATGGC
GCTTCCGCGACGTCGAGATCGTTTCTGTACGGCAATAGTGTCGGAGCAGG
CGACGGAGGCCGCCCGTGCGTGGAGGAGCGGAGACGGACGGGAGAGGACG
TAGTTCTCGCCGGCGACTTCGGCTTGGCGGCGCTGCCCGGAGCCGAGACA
GGGGCCGATAACGCCGATTTCAGCTTCTTGGGCACGCGTAGCGGTCCTAT
CTTCGATCCCGGGGTTGACGCCCGCGTTCCGTTACTTCACCAGCAGCACA
AGCAGCATGTTTTGCACAGCCATCGGTCAAACGCTCTTCCCCTCCATCCT
CGGCGGGTGGTTGGTAGGTCGCCATCGATCGCCCCTATGCGGAGACGCCT
GCCCCCCCCAAGTGAGGCCCTCGAGTCGGAGAAGTTTGCCCCTGCGCCTG
GCGGAGCGAACGTTGGCAGGAGTTCCGACGCATGGCAGGGCAGTACCGGC
AGCGGCGGGGGCAGTGGGGGTGGCGTCAACGGAGTGACTAGCTCCGGGAC
GGGGCTCCTCCGTTGGTCATTCCCTCCCCCGTCAGGAATTGGGGGACACG
TCGGAGGCCCTTCAGCCGATGACGAAGAGCATGTCGGCGTAACTCGCTTG
AGCGGGTTCGAACAGGACGGTGGAGGGACTTCCGCGAGACAGGTTGGAGG
CGGCAGCGGTGGCCGAGGCGGCAGTGGCGAATGCAGGGACGTTCGCGGCG
AGTGGGGCGGAAATGGGATGCGGCCGGTGCTGGCGATCGATTATGGGGTT
TCACGGAGGCTTTTTTGTGACGCCGACAAGGGTCATGGTGGAGGCGATGG
TATCGGCGACGGCACAGCACGCAGCAAGCAGCCAAGCTTATCTGGGTCGG
TGGATAGCCATCAATTCGCCATGATGCGCGGGCAGCACAGAAGTTTTGAG
GTGCGTTTTTTTTTACGGTTGGCATGAGGCTTATAGGCTTATACCCACGC
GTTCGGTTCGAGGTTTTTCCAAGAATCCCAGCAGCATGTTCGGGCTGCGA
AGTATCCCGCGTTGACGCTCCGATTTTTACGAGACAGAGTGCGCTCGAAC
CTATCCCCTTGGAACCCCAAGTGACTATTACCCGCGTCGACGCGCTGATT
TTTGCTCGACGGAGTATGCTCGAACGTACCCCCCCCCTTGGAACCCCACG
TGACGTTTTTAGTCGAGGCCATCGACGCAAATACTTGTACCTCACCTGAC
TGGTGGTGCAGTTTCATACTCGGCACTAAAAAACAAGTTTTACAAAAAAA
TTGCCATAAATGAGTCGAGATTGACTAGATCCTCGTTCAGATTCTGTGTC
GTGTTGTGGTCTGGTTTGGCTGTATGGCTGTCTGGTTTAGGTGTAAAGAC
CAGTGTACTGTGTACGGTATCTAACTCTTGATTCAGTGTTTTCTAACATT
TCTCTGAACATGAGCCACAGTCCCATCCCAAACCCATCACCCCGCGCATG
GTGACGCCTGCCGCGTCTCTCCCCCCCCCCCCACGGTAGACGGACAACCG
CATAGACAGTGGCTTTAACGGAGTCGGTGAAACGTCACCTGACGACGGCA
GAGTCCCCGGCCAAAACCATTTCTCCGTTTTTCACCATACGCGTTTCGCT
TCAAATCTCCAGGAATCCGCCCCCACAGTGAGAAGCGACTATGACGATAG
GGGGGCAGCGGCTGGC back to top Coding sequence (CDS) from alignment at P-canaliculata_contig9958:2998..6514-
>mRNA_P-canaliculata_contig9958.24071.1 ID=mRNA_P-canaliculata_contig9958.24071.1|Name=mRNA_P-canaliculata_contig9958.24071.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=3654bp|location=Sequence derived from alignment at P-canaliculata_contig9958:2998..6514- (Pelvetia canaliculata dioecious) back to top