mRNA_P-canaliculata_contig99569.24067.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig99569.24067.1
Unique NamemRNA_P-canaliculata_contig99569.24067.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig99569.24067.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig99569contigP-canaliculata_contig99569:23..1042 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1020
Cds size1020
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817354.854664-CDS-P-canaliculata_contig99569:22..10421622817354.854664-CDS-P-canaliculata_contig99569:22..1042Pelvetia canaliculata dioeciousCDSP-canaliculata_contig99569 23..1042 +
1693495243.0852962-CDS-P-canaliculata_contig99569:22..10421693495243.0852962-CDS-P-canaliculata_contig99569:22..1042Pelvetia canaliculata dioeciousCDSP-canaliculata_contig99569 23..1042 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig99569.24067.1prot_P-canaliculata_contig99569.24067.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig99569 23..1042 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig99569.24067.1

>prot_P-canaliculata_contig99569.24067.1 ID=prot_P-canaliculata_contig99569.24067.1|Name=mRNA_P-canaliculata_contig99569.24067.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=340bp
AAGIPYDNVSLQKDYEERTHPEGAADWIESTKLVDWGREVKVYEQLPYLG
RESEEPVNLVPGGGASDWPGEPLVADFLMEMEPVINLIERASSHSTPVRF
PVKFDGIGTLHPYHQESRSIQRLLSLDCDFAYFHKDHQRVMRDLSLMEAT
AEAYDGRDCLISGLVNGALRSIRMSAMRRTLTHCQWSASELDTLRDSLAL
KEDISARWQYIMLRERAFGLAIVDEPPENLAQAIGQEEQFSRQLKLYTGP
SEVTTLIEAYQKIIELPKGADISKWKQRGDALDDWIATLPSNSLAAMLVP
AGYSCLEAEVRVEEIRRWTLTAIAIQQFKLQNERWPKELA
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mRNA from alignment at P-canaliculata_contig99569:23..1042+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig99569.24067.1 ID=mRNA_P-canaliculata_contig99569.24067.1|Name=mRNA_P-canaliculata_contig99569.24067.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=1020bp|location=Sequence derived from alignment at P-canaliculata_contig99569:23..1042+ (Pelvetia canaliculata dioecious)
GCAGCGGGTATTCCTTATGATAATGTCAGCCTGCAGAAAGACTACGAAGA
ACGAACCCATCCGGAAGGTGCTGCAGATTGGATTGAGAGTACCAAGCTCG
TTGATTGGGGACGTGAAGTTAAGGTTTACGAGCAACTTCCCTACCTTGGA
AGGGAATCCGAGGAACCAGTGAACTTGGTGCCCGGTGGCGGTGCATCCGA
TTGGCCTGGCGAACCACTTGTGGCCGACTTTTTGATGGAAATGGAACCGG
TGATCAATTTGATTGAGCGAGCCAGTTCCCATTCAACGCCGGTGCGTTTT
CCAGTAAAGTTTGACGGGATTGGAACCCTGCACCCTTACCATCAGGAATC
TCGCAGCATCCAAAGATTGCTTTCGCTTGATTGTGATTTTGCTTATTTTC
ATAAAGACCATCAGCGAGTGATGCGCGACCTTTCGTTAATGGAAGCGACT
GCCGAAGCTTATGATGGGCGAGATTGTCTGATTTCTGGATTGGTGAATGG
GGCATTACGAAGTATCCGCATGAGCGCAATGCGCCGCACGTTGACCCACT
GTCAATGGTCGGCGTCAGAATTGGATACGCTTAGAGATTCGCTCGCTTTA
AAAGAAGACATTTCGGCGAGGTGGCAATACATCATGCTACGCGAGAGAGC
GTTCGGACTTGCTATCGTCGATGAGCCTCCAGAAAACCTCGCTCAGGCGA
TTGGTCAAGAAGAACAGTTTTCAAGGCAATTAAAACTTTATACAGGGCCT
TCCGAAGTTACCACATTGATAGAAGCGTATCAAAAGATTATCGAGTTGCC
GAAAGGTGCGGATATCAGTAAGTGGAAACAACGAGGTGACGCACTGGATG
ACTGGATTGCAACGCTGCCTTCGAACTCTCTCGCTGCAATGCTAGTTCCT
GCGGGTTATTCATGTCTCGAAGCTGAGGTGCGAGTCGAAGAAATTCGGCG
CTGGACTTTGACGGCGATAGCGATTCAACAATTTAAACTGCAAAACGAAA
GGTGGCCCAAAGAGCTGGCT
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Coding sequence (CDS) from alignment at P-canaliculata_contig99569:23..1042+

>mRNA_P-canaliculata_contig99569.24067.1 ID=mRNA_P-canaliculata_contig99569.24067.1|Name=mRNA_P-canaliculata_contig99569.24067.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=2040bp|location=Sequence derived from alignment at P-canaliculata_contig99569:23..1042+ (Pelvetia canaliculata dioecious)
GCAGCGGGTATTCCTTATGATAATGTCAGCCTGCAGAAAGACTACGAAGA
ACGAACCCATCCGGAAGGTGCTGCAGATTGGATTGAGAGTACCAAGCTCG
TTGATTGGGGACGTGAAGTTAAGGTTTACGAGCAACTTCCCTACCTTGGA
AGGGAATCCGAGGAACCAGTGAACTTGGTGCCCGGTGGCGGTGCATCCGA
TTGGCCTGGCGAACCACTTGTGGCCGACTTTTTGATGGAAATGGAACCGG
TGATCAATTTGATTGAGCGAGCCAGTTCCCATTCAACGCCGGTGCGTTTT
CCAGTAAAGTTTGACGGGATTGGAACCCTGCACCCTTACCATCAGGAATC
TCGCAGCATCCAAAGATTGCTTTCGCTTGATTGTGATTTTGCTTATTTTC
ATAAAGACCATCAGCGAGTGATGCGCGACCTTTCGTTAATGGAAGCGACT
GCCGAAGCTTATGATGGGCGAGATTGTCTGATTTCTGGATTGGTGAATGG
GGCATTACGAAGTATCCGCATGAGCGCAATGCGCCGCACGTTGACCCACT
GTCAATGGTCGGCGTCAGAATTGGATACGCTTAGAGATTCGCTCGCTTTA
AAAGAAGACATTTCGGCGAGGTGGCAATACATCATGCTACGCGAGAGAGC
GTTCGGACTTGCTATCGTCGATGAGCCTCCAGAAAACCTCGCTCAGGCGA
TTGGTCAAGAAGAACAGTTTTCAAGGCAATTAAAACTTTATACAGGGCCT
TCCGAAGTTACCACATTGATAGAAGCGTATCAAAAGATTATCGAGTTGCC
GAAAGGTGCGGATATCAGTAAGTGGAAACAACGAGGTGACGCACTGGATG
ACTGGATTGCAACGCTGCCTTCGAACTCTCTCGCTGCAATGCTAGTTCCT
GCGGGTTATTCATGTCTCGAAGCTGAGGTGCGAGTCGAAGAAATTCGGCG
CTGGACTTTGACGGCGATAGCGATTCAACAATTTAAACTGCAAAACGAAA
GGTGGCCCAAAGAGCTGGCTGCAGCGGGTATTCCTTATGATAATGTCAGC
CTGCAGAAAGACTACGAAGAACGAACCCATCCGGAAGGTGCTGCAGATTG
GATTGAGAGTACCAAGCTCGTTGATTGGGGACGTGAAGTTAAGGTTTACG
AGCAACTTCCCTACCTTGGAAGGGAATCCGAGGAACCAGTGAACTTGGTG
CCCGGTGGCGGTGCATCCGATTGGCCTGGCGAACCACTTGTGGCCGACTT
TTTGATGGAAATGGAACCGGTGATCAATTTGATTGAGCGAGCCAGTTCCC
ATTCAACGCCGGTGCGTTTTCCAGTAAAGTTTGACGGGATTGGAACCCTG
CACCCTTACCATCAGGAATCTCGCAGCATCCAAAGATTGCTTTCGCTTGA
TTGTGATTTTGCTTATTTTCATAAAGACCATCAGCGAGTGATGCGCGACC
TTTCGTTAATGGAAGCGACTGCCGAAGCTTATGATGGGCGAGATTGTCTG
ATTTCTGGATTGGTGAATGGGGCATTACGAAGTATCCGCATGAGCGCAAT
GCGCCGCACGTTGACCCACTGTCAATGGTCGGCGTCAGAATTGGATACGC
TTAGAGATTCGCTCGCTTTAAAAGAAGACATTTCGGCGAGGTGGCAATAC
ATCATGCTACGCGAGAGAGCGTTCGGACTTGCTATCGTCGATGAGCCTCC
AGAAAACCTCGCTCAGGCGATTGGTCAAGAAGAACAGTTTTCAAGGCAAT
TAAAACTTTATACAGGGCCTTCCGAAGTTACCACATTGATAGAAGCGTAT
CAAAAGATTATCGAGTTGCCGAAAGGTGCGGATATCAGTAAGTGGAAACA
ACGAGGTGACGCACTGGATGACTGGATTGCAACGCTGCCTTCGAACTCTC
TCGCTGCAATGCTAGTTCCTGCGGGTTATTCATGTCTCGAAGCTGAGGTG
CGAGTCGAAGAAATTCGGCGCTGGACTTTGACGGCGATAGCGATTCAACA
ATTTAAACTGCAAAACGAAAGGTGGCCCAAAGAGCTGGCT
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