mRNA_P-canaliculata_contig99562.24065.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig99562.24065.1
Unique NamemRNA_P-canaliculata_contig99562.24065.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig99562.24065.1 vs. uniprot
Match: D8LGU6_ECTSI (Post-SET domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGU6_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 2.520e-17
Identity = 34/65 (52.31%), Postives = 47/65 (72.31%), Query Frame = 1
Query:   37 SSKEPRVSLVVRAAEIPEGESLTVDYNAMELDMSSPFDCRCGAANCRGRISGFSKLAPDVQAEYI 231
            ++++P + + VRA  +   E LT+DYNAME+DM+ PFDC+CGA  CRG +SGFS L+   Q EYI
Sbjct:   16 TAEQPYLRVTVRAPRVQPSELLTIDYNAMEIDMTCPFDCQCGAVRCRGWVSGFSNLSRAEQEEYI 80          
BLAST of mRNA_P-canaliculata_contig99562.24065.1 vs. uniprot
Match: A0A6H5JKC4_9PHAE (Post-SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKC4_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 1.240e-15
Identity = 36/63 (57.14%), Postives = 45/63 (71.43%), Query Frame = 1
Query:   43 KEPRVSLVVRAAEIPEGESLTVDYNAMELDMSSPFDCRCGAANCRGRISGFSKLAPDVQAEYI 231
            ++P + + VRA  I   E LT+DYNAME+DMS PFDC+CGA  CRG +SGFS L+   Q EYI
Sbjct:  270 EQPYLRVTVRAPRIRPNELLTIDYNAMEIDMSCPFDCQCGAVRCRGWVSGFSNLSRAEQKEYI 332          
BLAST of mRNA_P-canaliculata_contig99562.24065.1 vs. uniprot
Match: A0A6H5K6N9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6N9_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 2.070e-15
Identity = 33/65 (50.77%), Postives = 47/65 (72.31%), Query Frame = 1
Query:   37 SSKEPRVSLVVRAAEIPEGESLTVDYNAMELDMSSPFDCRCGAANCRGRISGFSKLAPDVQAEYI 231
            ++++P + + VRA  +   E+L +DYNAME+DM+ PFDC+CGA  CRG +SGFS L+   Q EYI
Sbjct:  175 TAEQPYLRVTVRAPRVQPNEALEIDYNAMEIDMTCPFDCQCGAVRCRGWVSGFSNLSRAEQEEYI 239          
BLAST of mRNA_P-canaliculata_contig99562.24065.1 vs. uniprot
Match: W5WEZ3_9PSEU (Uncharacterized protein n=1 Tax=Kutzneria albida DSM 43870 TaxID=1449976 RepID=W5WEZ3_9PSEU)

HSP 1 Score: 63.2 bits (152), Expect = 2.260e-10
Identity = 32/67 (47.76%), Postives = 37/67 (55.22%), Query Frame = 1
Query:   16 FFWRFPLSSKEPRVSLVVRA----AEIPEGESLTVDYNAMELDMSSPFDCRCGAANCRGRISGFSKL 204
            FFWRF   S EP V L  R       I   + +T  Y   E +M+ PFDCRCG+A C GRISGF  L
Sbjct:   70 FFWRFTNHSCEPNVRLDGRQFFALRPIERWQEITFHYGTTEYEMAEPFDCRCGSAQCEGRISGFRHL 136          
BLAST of mRNA_P-canaliculata_contig99562.24065.1 vs. uniprot
Match: A0A3P3YAV3_PLABS (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3YAV3_PLABS)

HSP 1 Score: 62.8 bits (151), Expect = 3.460e-10
Identity = 26/54 (48.15%), Postives = 37/54 (68.52%), Query Frame = 1
Query:   64 VVRAAEIPEGESLTVDYNAMELDMSSPFDCRCGAANCRGRISGFSKLAPDVQAE 225
            +V   +I  G+ +T DYN  E DM+SPFDC CGA+NC+ R++GF  L P  +A+
Sbjct:  100 MVAIKQINAGDPITFDYNTTEWDMASPFDCICGASNCKKRVAGFKNLTPAQKAD 153          
BLAST of mRNA_P-canaliculata_contig99562.24065.1 vs. uniprot
Match: UPI002010E419 (SET domain-containing protein-lysine N-methyltransferase n=1 Tax=Kutzneria sp. CA-103260 TaxID=2802641 RepID=UPI002010E419)

HSP 1 Score: 57.8 bits (138), Expect = 8.970e-9
Identity = 29/64 (45.31%), Postives = 34/64 (53.12%), Query Frame = 1
Query:   16 FFWRFPLSSKEPRVSLVVRA----AEIPEGESLTVDYNAMELDMSSPFDCRCGAANCRGRISGF 195
            FFWRF   S  P   L  R       I   + +T  Y+  E +M+ PFDCRCG ANC GRI GF
Sbjct:   22 FFWRFTNHSCAPNAQLRGREFFALKAIEPWQEITFHYDTTEYEMAEPFDCRCGTANCFGRIQGF 85          
BLAST of mRNA_P-canaliculata_contig99562.24065.1 vs. uniprot
Match: UPI001BA8E271 (SET domain-containing protein-lysine N-methyltransferase n=1 Tax=Kutzneria sp. CA-103260 TaxID=2802641 RepID=UPI001BA8E271)

HSP 1 Score: 57.8 bits (138), Expect = 2.380e-8
Identity = 29/64 (45.31%), Postives = 34/64 (53.12%), Query Frame = 1
Query:   16 FFWRFPLSSKEPRVSLVVRA----AEIPEGESLTVDYNAMELDMSSPFDCRCGAANCRGRISGF 195
            FFWRF   S  P   L  R       I   + +T  Y+  E +M+ PFDCRCG ANC GRI GF
Sbjct:   72 FFWRFTNHSCAPNAQLRGREFFALKAIEPWQEITFHYDTTEYEMAEPFDCRCGTANCFGRIQGF 135          
BLAST of mRNA_P-canaliculata_contig99562.24065.1 vs. uniprot
Match: D8LGU7_ECTSI (Post-SET domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGU7_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 3.020e-8
Identity = 23/37 (62.16%), Postives = 28/37 (75.68%), Query Frame = 1
Query:  121 MELDMSSPFDCRCGAANCRGRISGFSKLAPDVQAEYI 231
            ME+DMS PF+C+CGA  CRG +SGFS L+   Q EYI
Sbjct:    1 MEIDMSCPFECQCGAVRCRGLVSGFSNLSRVEQKEYI 37          
BLAST of mRNA_P-canaliculata_contig99562.24065.1 vs. uniprot
Match: D0LTH4_HALO1 (Uncharacterized protein n=2 Tax=Haliangium ochraceum TaxID=80816 RepID=D0LTH4_HALO1)

HSP 1 Score: 55.5 bits (132), Expect = 1.070e-7
Identity = 25/51 (49.02%), Postives = 34/51 (66.67%), Query Frame = 1
Query:   82 IPEGESLTVDYNAMELDMSSPFDCRCGAANCRGRISGFSKLAPDVQAEYIA 234
            I  GE +  DY   E ++S+PF+CRCGA  CRGR+SGF  L+    AE++A
Sbjct:   73 IARGEEILWDYAMSEYELSAPFECRCGARACRGRVSGFRNLS----AEHVA 119          
BLAST of mRNA_P-canaliculata_contig99562.24065.1 vs. uniprot
Match: A0A836B913_9CHLO (Post-SET domain-containing protein n=2 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A836B913_9CHLO)

HSP 1 Score: 53.5 bits (127), Expect = 5.000e-7
Identity = 25/50 (50.00%), Postives = 29/50 (58.00%), Query Frame = 1
Query:   79 EIPEGESLTVDYNAMELDMSSPFDCRCGAANCRGRISGFSKLAPDVQAEY 228
            E+  G  LT  Y + E DM +PFDCRCGAA C GRI+G   L     A Y
Sbjct:   59 EVAAGAELTFFYPSTEWDMETPFDCRCGAAACLGRIAGAKHLCDQQFARY 108          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig99562.24065.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D8LGU6_ECTSI2.520e-1752.31Post-SET domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JKC4_9PHAE1.240e-1557.14Post-SET domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K6N9_9PHAE2.070e-1550.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W5WEZ3_9PSEU2.260e-1047.76Uncharacterized protein n=1 Tax=Kutzneria albida D... [more]
A0A3P3YAV3_PLABS3.460e-1048.15Uncharacterized protein n=1 Tax=Plasmodiophora bra... [more]
UPI002010E4198.970e-945.31SET domain-containing protein-lysine N-methyltrans... [more]
UPI001BA8E2712.380e-845.31SET domain-containing protein-lysine N-methyltrans... [more]
D8LGU7_ECTSI3.020e-862.16Post-SET domain-containing protein n=1 Tax=Ectocar... [more]
D0LTH4_HALO11.070e-749.02Uncharacterized protein n=2 Tax=Haliangium ochrace... [more]
A0A836B913_9CHLO5.000e-750.00Post-SET domain-containing protein n=2 Tax=Chlamyd... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig99562contigP-canaliculata_contig99562:721..993 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score63.5
Seed ortholog evalue5.7e-08
Seed eggNOG ortholog1449976.KALB_5975
EggNOG free text desc.SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
EggNOG OGs2INFE@201174,4E4YY@85010,COG2940@1,COG2940@2
COG Functional cat.S
Best tax levelPseudonocardiales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size273
Cds size273
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817354.7848272-CDS-P-canaliculata_contig99562:720..9931622817354.7848272-CDS-P-canaliculata_contig99562:720..993Pelvetia canaliculata dioeciousCDSP-canaliculata_contig99562 721..993 -
1693495243.0554247-CDS-P-canaliculata_contig99562:720..9931693495243.0554247-CDS-P-canaliculata_contig99562:720..993Pelvetia canaliculata dioeciousCDSP-canaliculata_contig99562 721..993 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig99562.24065.1prot_P-canaliculata_contig99562.24065.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig99562 721..993 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig99562.24065.1

>prot_P-canaliculata_contig99562.24065.1 ID=prot_P-canaliculata_contig99562.24065.1|Name=mRNA_P-canaliculata_contig99562.24065.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=91bp
TVPSPFFWRFPLSSKEPRVSLVVRAAEIPEGESLTVDYNAMELDMSSPFD
CRCGAANCRGRISGFSKLAPDVQAEYIAVCRAGEVGARSGG
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mRNA from alignment at P-canaliculata_contig99562:721..993-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig99562.24065.1 ID=mRNA_P-canaliculata_contig99562.24065.1|Name=mRNA_P-canaliculata_contig99562.24065.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=273bp|location=Sequence derived from alignment at P-canaliculata_contig99562:721..993- (Pelvetia canaliculata dioecious)
ACTGTCCCCTCACCATTCTTTTGGCGCTTTCCCCTGTCTTCTAAGGAGCC CCGTGTGAGCCTCGTTGTGCGGGCGGCCGAGATCCCGGAGGGTGAGAGTC TCACTGTAGACTACAACGCCATGGAATTGGACATGTCGAGTCCATTTGAC TGCCGGTGCGGTGCCGCAAACTGTCGTGGCCGCATTTCAGGATTTTCGAA GCTGGCTCCCGACGTTCAGGCGGAGTACATCGCGGTTTGTCGGGCAGGCG AGGTCGGAGCACGATCGGGGGGT
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Coding sequence (CDS) from alignment at P-canaliculata_contig99562:721..993-

>mRNA_P-canaliculata_contig99562.24065.1 ID=mRNA_P-canaliculata_contig99562.24065.1|Name=mRNA_P-canaliculata_contig99562.24065.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=546bp|location=Sequence derived from alignment at P-canaliculata_contig99562:721..993- (Pelvetia canaliculata dioecious)
ACTGTCCCCTCACCATTCTTTTGGCGCTTTCCCCTGTCTTCTAAGGAGCC
CCGTGTGAGCCTCGTTGTGCGGGCGGCCGAGATCCCGGAGGGTGAGAGTC
TCACTGTAGACTACAACGCCATGGAATTGGACATGTCGAGTCCATTTGAC
TGCCGGTGCGGTGCCGCAAACTGTCGTGGCCGCATTTCAGGATTTTCGAA
GCTGGCTCCCGACGTTCAGGCGGAGTACATCGCGGTTTGTCGGGCAGGCG
AGGTCGGAGCACGATCGGGGGGTACTGTCCCCTCACCATTCTTTTGGCGC
TTTCCCCTGTCTTCTAAGGAGCCCCGTGTGAGCCTCGTTGTGCGGGCGGC
CGAGATCCCGGAGGGTGAGAGTCTCACTGTAGACTACAACGCCATGGAAT
TGGACATGTCGAGTCCATTTGACTGCCGGTGCGGTGCCGCAAACTGTCGT
GGCCGCATTTCAGGATTTTCGAAGCTGGCTCCCGACGTTCAGGCGGAGTA
CATCGCGGTTTGTCGGGCAGGCGAGGTCGGAGCACGATCGGGGGGT
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